Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

19695767 .. 19698712

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAACCAGCTGGTGGTGAAGAATACGGAGGGGATGAAGATGATGAGGGATATGGAAATGACGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005829 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

163

Amino Acids

17.66

Weight (kDa)

5.27

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	45 - 137	2.8e-38	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	434
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	2 cut(s)	224, 285
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	221
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	406, 431, 487
AluI	AGCT	3 cut(s)	406, 431, 487
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	224, 285
ApaLI	GTGCAC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	4 cut(s)	167, 239, 317, 449
BaeGI	GKGCMC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	64, 373
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	64, 373
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	84, 375
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
BspACI	CCGC	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	224, 285
BssECI	CCNNGG	2 cut(s)	64, 373
BssMI	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	6 cut(s)	42, 108, 165, 232, 280, 393
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	386
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	6 cut(s)	124, 146, 357, 406, 431, 487
CviKI_1	RGCY	6 cut(s)	124, 146, 357, 406, 431, 487
DpnI	GATC	6 cut(s)	41, 107, 164, 231, 279, 392
DpnII	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	135
FaiI	YATR	5 cut(s)	133, 177, 345, 474, 490
FatI	CATG	1 cut(s)	131
FokI	GGATG	1 cut(s)	467
FspBI	CTAG	1 cut(s)	290
HapII	CCGG	2 cut(s)	84, 375
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	2 cut(s)	16, 209
HpaII	CCGG	2 cut(s)	84, 375
HphI	GGTGA	4 cut(s)	167, 239, 317, 449
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	103, 172, 383
Hsp92II	CATG	1 cut(s)	135
Kzo9I	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	7 cut(s)	97, 128, 245, 342, 388, 417, 441
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	6 cut(s)	41, 107, 164, 231, 279, 392
MboI	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
MboII	GAAGA	6 cut(s)	34, 37, 91, 322, 452, 470
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	98, 245
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	306, 443, 460
MseI	TTAA	3 cut(s)	120, 243, 320
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	2 cut(s)	84, 375
MspR9I	CCNGG	1 cut(s)	375
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
NlaIII	CATG	1 cut(s)	135
NspI	RCATGY	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	153
PciI	ACATGT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	434
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PscI	ACATGT	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	120, 243, 320
Sau3AI	GATC	6 cut(s)	39, 105, 162, 229, 277, 390
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	98, 245
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	207, 212
TasI	AATT	2 cut(s)	98, 245
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	120, 243, 320
Tru9I	TTAA	3 cut(s)	120, 243, 320
TscAI	CASTG	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	435, 471
TspGWI	ACGGA	3 cut(s)	11, 222, 462
TspRI	CASTG	1 cut(s)	393
Van91I	CCANNNNNTGG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	135
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.