Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Forward (+)

24826303 .. 24829431

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTATAATAGAGGCCCAGCAGAAGGGAGAAGCAGAAAGGCTTGCCTCACTGAGACCGATATGAGGATGAAGACCGCCACCATTCTCTTGATTCTGCCTCTTCTTTCGGCCTTGGCTTTGGCCGGGAAGGTCGCCGATGTCAAAACATTGCAGATTGGTGTCAAGTATAAACCAGAAACTTGCGAACTTAAGGCTCGCAAAGGTGATAAAGTCAGGGTACACTACCGGGGAAAACTCACAGATGGAACTGTCTTTGATTCTAGTTTTGAAAGGGGTGATCCAATCTCTTTTGAGCTTGGGGTTGGTCAAGTTATAAAAGTTAAAGTGAGGACCAACTTTATGGGATATGCAGCATGTGATGCCATGATAGGATGGGACCAAGGAATTGTGGGAATGTGCGTAGGCGAGAAGCGCAAATTGAAAATACCTGCACATATGGGCTATGGGGATCAGGGTTCTCCACCAACTATTCCAGGTGGTGCCACACTGATATTCGACACTGAGCTCGTTGAAATTTTGGGGAGAGATTCAAAGAACGACGGGGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

183

Amino Acids

19.89

Weight (kDa)

9.01

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	62 - 170	7.5e-35	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	272, 456
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	23, 63
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	269, 421, 512, 531
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	3 cut(s)	295, 505, 547
AluI	AGCT	3 cut(s)	295, 505, 547
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	272, 456
AoxI	GGCC	3 cut(s)	13, 108, 120
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	14, 330, 376
AsuC2I	CCSGG	2 cut(s)	124, 227
AsuHPI	GGTGA	2 cut(s)	215, 287
AvaII	GGWCC	2 cut(s)	330, 376
BanI	GGYRCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	236, 366
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	2 cut(s)	124, 227
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	548
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	124, 227, 474
Bme18I	GGWCC	2 cut(s)	330, 376
BmgT120I	GGNCC	3 cut(s)	14, 330, 376
BmiI	GGNNCC	2 cut(s)	377, 481
BmrFI	CCNGG	3 cut(s)	124, 227, 474
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	124, 227
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	111, 226, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 63
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	111, 226, 379
BseGI	GGATG	2 cut(s)	72, 377
BseLI	CCNNNNNNNGG	2 cut(s)	23, 63
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	42, 492
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	15, 110, 122
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	123, 226
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	23, 63
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	15, 110, 122
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	277, 448
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	15, 110, 122
BspCNI	CTCAG	2 cut(s)	43, 493
BspLI	GGNNCC	2 cut(s)	377, 481
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	272, 456
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	111, 226, 379
BssMI	GATC	2 cut(s)	277, 448
BssT1I	CCWWGG	2 cut(s)	111, 379
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	43, 196
BstDEI	CTNAG	2 cut(s)	51, 501
BstF5I	GGATG	2 cut(s)	72, 377
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	2 cut(s)	280, 451
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	277, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 411
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	122, 225, 472
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	77
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	15, 110, 122
BtsCI	GGATG	2 cut(s)	72, 377
BtsIMutI	CAGTG	3 cut(s)	48, 485, 498
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	43, 196
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	14, 330, 376
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	354, 364
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	51, 501
DpnI	GATC	2 cut(s)	279, 450
DpnII	GATC	2 cut(s)	277, 448
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	2 cut(s)	111, 379
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	330, 376
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	111, 379
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	111, 379
FaeI	CATG	2 cut(s)	357, 367
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	353, 363
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	79, 384
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	351
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	15, 110, 122
HapII	CCGG	2 cut(s)	123, 226
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	357, 367
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	91, 257, 527
HpaII	CCGG	2 cut(s)	123, 226
HphI	GGTGA	2 cut(s)	215, 287
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	17, 121
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	151, 350, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 411
HpyF3I	CTNAG	2 cut(s)	51, 501
Hsp92II	CATG	2 cut(s)	357, 367
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	277, 448
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	9 cut(s)	30, 136, 186, 199, 239, 437, 441, 459, 486
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	261
MalI	GATC	2 cut(s)	279, 450
MboI	GATC	2 cut(s)	277, 448
MboII	GAAGA	2 cut(s)	82, 92
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	3 cut(s)	384, 416, 513
MnlI	CCTC	5 cut(s)	5, 56, 57, 108, 321
MseI	TTAA	2 cut(s)	189, 321
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	123, 226
MspR9I	CCNGG	3 cut(s)	124, 227, 474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	359, 411
NciI	CCSGG	2 cut(s)	124, 227
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	2 cut(s)	277, 448
NlaIII	CATG	2 cut(s)	357, 367
NlaIV	GGNNCC	2 cut(s)	377, 481
NspI	RCATGY	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	91, 257, 527
PkrI	GCNGC	1 cut(s)	352
PsiI	TTATAA	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	377, 481
PspPI	GGNCC	3 cut(s)	14, 330, 376
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	189, 321
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	277, 448
Sau96I	GGNCC	3 cut(s)	14, 330, 376
ScrFI	CCNGG	3 cut(s)	124, 227, 474
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	7 cut(s)	132, 205, 297, 430, 478, 507, 549
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	2 cut(s)	330, 376
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	3 cut(s)	384, 416, 513
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	122, 225, 472
StyI	CCWWGG	2 cut(s)	111, 379
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	495
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	384, 416, 513
TfiI	GAWTC	3 cut(s)	91, 257, 527
Tru1I	TTAA	2 cut(s)	189, 321
Tru9I	TTAA	2 cut(s)	189, 321
TscAI	CASTG	3 cut(s)	55, 492, 505
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	3 cut(s)	55, 492, 505
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	330, 376
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.