Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

24494644 .. 24497460

Gene Structure 2817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1156400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAACCCGTTGCCATTCTCTTCTTCTTCCTGTCTCTCTCCAGCTCCGTTTTTGCGGCCAAGGAGGTCAAAGAGTTGCAGATTGGCGTCAAGTATAAGCCGGAATCTTGTGAAATTAAGGCTCGTAAAGGTGATACAGTCAGGGTGCACTATCGGGGGAAACTCACTGATGGAACTGTATTTGATTCTAGTTTTGAAAGGGGCGATCCAATCTCTTTTGAGCTTGGGACTGGTCAAGTTATAAAAGGATGGGACCAAGGATTGTTGGGAACGTGCGTAGGTGAGAAGCGGAAGTTGAAAATACCTGCAAAACTTGGTTATGGGGAGCAGGGTTCTCCACCAACCATCCCAGGTGGTGCAACACTGATATTCGAGACCGAGCTGGTGGAAATTCTGGGGAGAAATTCAAAAGCTGAAGATGAAGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

144

Amino Acids

15.62

Weight (kDa)

6.61

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	37 - 129	8.9e-38	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	2 cut(s)	56, 289
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	390, 403
AcyI	GRCGYC	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	197, 298, 408
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	45, 223, 382, 413, 427
AluI	AGCT	5 cut(s)	45, 223, 382, 413, 427
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	39, 368
Alw44I	GTGCAC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	390, 403
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	143, 293
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	3 cut(s)	164, 243, 353
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	39, 368
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	60, 256, 349
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	60, 256, 349
BseGI	GGATG	2 cut(s)	254, 345
BseNI	ACTGG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	241, 266
BsmAI	GTCTC	2 cut(s)	39, 368
BsmFI	GGGAC	2 cut(s)	241, 266
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	56, 289
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	60, 256, 349
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	60, 256
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	139, 178
Bst6I	CTCTTC	2 cut(s)	26, 417
BstACI	GRCGYC	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	254, 345
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	2 cut(s)	39, 368
BstMBI	GATC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	254, 345
BtsIMutI	CAGTG	2 cut(s)	165, 362
BveI	ACCTGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	1 cut(s)	76
CviJI	RGCY	8 cut(s)	45, 59, 100, 122, 223, 382, 413, 427
CviKI_1	RGCY	8 cut(s)	45, 59, 100, 122, 223, 382, 413, 427
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	26, 417
EarI	CTCTTC	2 cut(s)	26, 417
Eco130I	CCWWGG	2 cut(s)	60, 256
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	60, 256
ErhI	CCWWGG	2 cut(s)	60, 256
FaiI	YATR	3 cut(s)	96, 242, 321
FaqI	GGGAC	2 cut(s)	241, 266
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	261, 332
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	104, 185
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	143, 293
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	139, 178
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	79, 148, 308, 359
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	50, 325
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	272
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	13, 16, 19, 428
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	114, 390, 403
MnlI	CCTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	104, 185
PkrI	GCNGC	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	3 cut(s)	114, 390, 403
SsiI	CCGC	2 cut(s)	56, 289
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	60, 256
TaaI	ACNGT	2 cut(s)	139, 178
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	372
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	114, 390, 403
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	104, 185
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	172, 369
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	172, 369
VneI	GTGCAC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	390, 403
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.