Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005719.1

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

20283 .. 23094

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005719.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgaggatgaaggccgctaccatactcttgattctgcctcttctttcggccttggcttttgccgggaaggtcgccgatgtcaaaaccttgcagattggtgtcaagtacaagccagaaacttgtgaacttaaggctcgcaaaggtgataaagtcagggtacactaccggggaaaactcacagatggaactgtctttgattctagttttgaaaggggtgatccaatctcttttgagcttggggttggtcaagttatcaaaggatgggaccaaggaattgcgggaatgtgcgtaggcgagaagcgcaagttgaaaataccttcacatatgggctatggggatcagggttctccaccaactattccaggcggtgccacactgatattcgacactgagctcgttgaaattttggggagagattcaaaggacgacggggagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

8.52

Isoelectric Point (pI)

20.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	3 cut(s)	15, 278, 366
AclWI	GGATC	2 cut(s)	212, 345
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	2 cut(s)	107, 159
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	209, 310, 401, 420
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	235, 394, 436
AluI	AGCT	3 cut(s)	235, 394, 436
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	212, 345
AoxI	GGCC	2 cut(s)	12, 48
ApoI	RAATTY	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	2 cut(s)	64, 167
AsuHPI	GGTGA	2 cut(s)	155, 227
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	2 cut(s)	176, 255
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	2 cut(s)	64, 167
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	64, 167, 363
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	266, 370
BmrFI	CCNGG	3 cut(s)	64, 167, 363
BpuMI	CCSGG	2 cut(s)	64, 167
BsaJI	CCNNGG	3 cut(s)	51, 166, 268
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	51, 166, 268
BseGI	GGATG	2 cut(s)	12, 266
BseMII	CTCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	14, 50
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	63, 166
BslFI	GGGAC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	14, 50
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	217, 337
BspACI	CCGC	3 cut(s)	15, 278, 366
BspANI	GGCC	2 cut(s)	14, 50
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	266, 370
BspPI	GGATC	2 cut(s)	212, 345
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	51, 166, 268
BssMI	GATC	2 cut(s)	217, 337
BssT1I	CCWWGG	2 cut(s)	51, 268
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	12, 266
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	220, 340
BstMBI	GATC	2 cut(s)	217, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	3 cut(s)	62, 165, 361
BstSFI	CTRYAG	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	14, 50
BtsCI	GGATG	2 cut(s)	12, 266
BtsIMutI	CAGTG	2 cut(s)	374, 387
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	106, 158
CviJI	RGCY	9 cut(s)	14, 50, 56, 112, 134, 235, 330, 394, 436
CviKI_1	RGCY	9 cut(s)	14, 50, 56, 112, 134, 235, 330, 394, 436
CviQI	GTAC	2 cut(s)	106, 158
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	219, 339
DpnII	GATC	2 cut(s)	217, 337
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	51, 268
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	51, 268
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	51, 268
FaiI	YATR	4 cut(s)	23, 324, 326, 333
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	19, 273
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	14, 50
HapII	CCGG	2 cut(s)	63, 166
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	31, 197, 416
HpaII	CCGG	2 cut(s)	63, 166
HphI	GGTGA	2 cut(s)	155, 227
Hpy166II	GTNNAC	2 cut(s)	125, 160
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	125, 160
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	4, 61, 327
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	390
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	217, 337
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	7 cut(s)	76, 126, 139, 179, 326, 348, 375
MaeI	CTAG	1 cut(s)	201
MalI	GATC	2 cut(s)	219, 339
MboI	GATC	2 cut(s)	217, 337
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	2 cut(s)	273, 402
MnlI	CCTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	2 cut(s)	63, 166
MspR9I	CCNGG	3 cut(s)	64, 167, 363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	64, 167
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	217, 337
NlaIV	GGNNCC	2 cut(s)	266, 370
PfeI	GAWTC	3 cut(s)	31, 197, 416
PkrI	GCNGC	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	266, 370
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	2 cut(s)	107, 159
RsaNI	GTAC	2 cut(s)	106, 158
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	217, 337
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	3 cut(s)	64, 167, 363
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	7 cut(s)	72, 89, 145, 237, 319, 396, 438
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	273, 402
SsiI	CCGC	3 cut(s)	15, 278, 366
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	62, 165, 361
StyI	CCWWGG	2 cut(s)	51, 268
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	273, 402
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	31, 197, 416
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	381, 394
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	381, 394
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	402
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.