Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

45384824 .. 45388189

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGGCCGCTACCATACTCTTGATTCTGCCTCTTCTTTCGGCCTTGGCTTTTGCCGGGAAGGTCGCCGATGTCAAAACCTTGCAGATTGGTGTCAAGTACAAGCCAGAAACTTGTGAACTTAAGGCTCGCAAAGGTGATAAAGTCAGGGTACACTACCGGGGAAAACTCACAGATGGAACTGTCTTTGATTCTAGTTTTGAAAGGGGTGATCCAATCTCTTTTGAGCTTGGGGTTGGTCAAGTTATCAAAGGATGGGACCAAGGAATTGCGGGAATGTGCGTAGGCGAGAAGCGCAAGTTAAAAATACCTTCACATATGGGCTATGGGGATCAGGGTTCTCCACCAACTATTCCAGGTGGTGCCACACTGATATTCGACACTGAGCTCGTTGAAATTTTGGGGAGAGATTCAAAGAACGACGAGGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

144

Amino Acids

15.56

Weight (kDa)

7.74

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	40 - 131	9.2e-39	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	2 cut(s)	9, 272
AclWI	GGATC	2 cut(s)	206, 339
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	2 cut(s)	101, 153
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	203, 395, 414
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	229, 388, 430
AluI	AGCT	3 cut(s)	229, 388, 430
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	206, 339
AoxI	GGCC	2 cut(s)	6, 42
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	2 cut(s)	58, 161
AsuHPI	GGTGA	2 cut(s)	149, 221
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BccI	CCATC	2 cut(s)	170, 249
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	58, 161
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	58, 161, 357
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	260, 364
BmrFI	CCNGG	3 cut(s)	58, 161, 357
BpuMI	CCSGG	2 cut(s)	58, 161
BsaJI	CCNNGG	3 cut(s)	45, 160, 262
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	45, 160, 262
BseGI	GGATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	8, 44
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	57, 160
BslFI	GGGAC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	8, 44
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	211, 331
BspACI	CCGC	2 cut(s)	9, 272
BspANI	GGCC	2 cut(s)	8, 44
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	260, 364
BspPI	GGATC	2 cut(s)	206, 339
BspT107I	GGYRCC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	45, 160, 262
BssMI	GATC	2 cut(s)	211, 331
BssT1I	CCWWGG	2 cut(s)	45, 262
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	214, 334
BstMBI	GATC	2 cut(s)	211, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	56, 159, 355
BstSFI	CTRYAG	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	8, 44
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	368, 381
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	100, 152
CviJI	RGCY	9 cut(s)	8, 44, 50, 106, 128, 229, 324, 388, 430
CviKI_1	RGCY	9 cut(s)	8, 44, 50, 106, 128, 229, 324, 388, 430
CviQI	GTAC	2 cut(s)	100, 152
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	213, 333
DpnII	GATC	2 cut(s)	211, 331
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	45, 262
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	45, 262
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	45, 262
FaiI	YATR	4 cut(s)	17, 318, 320, 327
FaqI	GGGAC	1 cut(s)	272
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	8, 44
HapII	CCGG	2 cut(s)	57, 160
HhaI	GCGC	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	25, 191, 410
HpaII	CCGG	2 cut(s)	57, 160
HphI	GGTGA	2 cut(s)	149, 221
Hpy166II	GTNNAC	2 cut(s)	119, 154
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	119, 154
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	55, 321
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	384
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	211, 331
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	7 cut(s)	70, 120, 133, 173, 320, 342, 369
MaeI	CTAG	1 cut(s)	195
MalI	GATC	2 cut(s)	213, 333
MboI	GATC	2 cut(s)	211, 331
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	267, 396
MnlI	CCTC	2 cut(s)	42, 418
MseI	TTAA	2 cut(s)	123, 302
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	57, 160
MspR9I	CCNGG	3 cut(s)	58, 161, 357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	2 cut(s)	58, 161
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	2 cut(s)	211, 331
NlaIV	GGNNCC	2 cut(s)	260, 364
PfeI	GAWTC	3 cut(s)	25, 191, 410
PkrI	GCNGC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	260, 364
PspPI	GGNCC	1 cut(s)	259
RsaI	GTAC	2 cut(s)	101, 153
RsaNI	GTAC	2 cut(s)	100, 152
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	123, 302
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	211, 331
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	58, 161, 357
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	8 cut(s)	66, 83, 139, 231, 313, 361, 390, 432
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	267, 396
SsiI	CCGC	2 cut(s)	9, 272
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	56, 159, 355
StyI	CCWWGG	2 cut(s)	45, 262
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	267, 396
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	25, 191, 410
Tru1I	TTAA	2 cut(s)	123, 302
Tru9I	TTAA	2 cut(s)	123, 302
TscAI	CASTG	2 cut(s)	375, 388
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	375, 388
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	396
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.