RLG00000012817

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014071
Physical Location & Seq
Forward (+)
22656402 .. 22659207
2806 bp
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UTR
Exon/CDS
Intron
RLM00000012817

Sequence Viewer

Length: 441 bp
ATGAGGATGAAGGCCGCTACCATACTCTTGATTCTGCCTCTTCTTTCGGCCTTGGCTTTTGCCGGGAAGGTCGCCGATGTCAAAACCTTGCAGATTGGTGTCAAGTACAAGCCAGAAACTTGTGAACTTAAGGCTCGCAAAGGTGATAAAGTCAGGGTCCACTACCGGGGAAAACTCACAGATGGAACTGTCTTTGATTCTAGTTTTGAAAGGGGTGATCCAATCTCTTTTGAGCTTGGGGTTGGTCAAGTTATAAAAGGATGGGACCAAGGAATTGTGGGAATGTGCGTAGGCGAGAAGCGCAAGTTGAAAATACCTGCACATATGGGCTATGGGGATCAGGGTTCTCCACCAACTATTCCAGGTGGTGCCACACTGATATTCGACACTGAGCTCGTTGAAATTTTGGGGAGAGATTCAAAGAACGACGGGGAGCTGTAG

Protein Analysis

147

Amino Acids

15.79

Weight (kDa)

8.87

Isoelectric Point (pI)

18.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 42 - 133 1.2e-38 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25220 AT5G48580
fragaria_vesca FvH4_2g18170
malus_domestica MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica Prupe.8G194200_v2.0.a1
pyrus_communis pycom05g15500 pycom10g13460
rosa_chinensis RchiOBHm_Chr6g0283551
rosa_laevigata RLG00000012817
rosa_multiflora Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii Rroxscaffold_7G00185430
rosa_rugosa Rorug06G0155700
rosa_samantha Rh6BG270100 Rh6CG269900
rosa_wichuraiana Rw6G023170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 368
AciI CCGC 1 cut(s) 15
AclWI GGATC 2 cut(s) 212, 345
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 166
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 209, 310, 401, 420
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 235, 394, 436
AluI AGCT 3 cut(s) 235, 394, 436
Alw21I GWGCWC 1 cut(s) 396
AlwI GGATC 2 cut(s) 212, 345
AoxI GGCC 2 cut(s) 12, 48
ApoI RAATTY 1 cut(s) 402
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 157, 265
AsuC2I CCSGG 2 cut(s) 64, 167
AsuHPI GGTGA 2 cut(s) 155, 227
AvaII GGWCC 2 cut(s) 157, 265
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 2 cut(s) 176, 255
BciT130I CCWGG 1 cut(s) 363
BcnI CCSGG 2 cut(s) 64, 167
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 437
BfrI CTTAAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 64, 167, 363
Bme18I GGWCC 2 cut(s) 157, 265
BmgT120I GGNCC 2 cut(s) 157, 265
BmiI GGNNCC 3 cut(s) 158, 266, 370
BmrFI CCNGG 3 cut(s) 64, 167, 363
BpuMI CCSGG 2 cut(s) 64, 167
BsaJI CCNNGG 3 cut(s) 51, 166, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 51, 166, 268
BseGI GGATG 2 cut(s) 12, 266
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 2 cut(s) 14, 50
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 2 cut(s) 63, 166
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 14, 50
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 217, 337
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 14, 50
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 158, 266, 370
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 2 cut(s) 212, 345
BspT107I GGYRCC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 51, 166, 268
BssMI GATC 2 cut(s) 217, 337
BssT1I CCWWGG 2 cut(s) 51, 268
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 12, 266
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 220, 340
BstMBI GATC 2 cut(s) 217, 337
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 3 cut(s) 62, 165, 361
BstSFI CTRYAG 1 cut(s) 437
BsuRI GGCC 2 cut(s) 14, 50
BtsCI GGATG 2 cut(s) 12, 266
BtsIMutI CAGTG 2 cut(s) 374, 387
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 157, 265
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 9 cut(s) 14, 50, 56, 112, 134, 235, 330, 394, 436
CviKI_1 RGCY 9 cut(s) 14, 50, 56, 112, 134, 235, 330, 394, 436
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 390
DpnI GATC 2 cut(s) 219, 339
DpnII GATC 2 cut(s) 217, 337
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 51, 268
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 157, 265
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 51, 268
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 2 cut(s) 51, 268
FaiI YATR 5 cut(s) 23, 254, 324, 326, 333
FaqI GGGAC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 19, 273
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 14, 50
HapII CCGG 2 cut(s) 63, 166
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 3 cut(s) 31, 197, 416
HpaII CCGG 2 cut(s) 63, 166
HphI GGTGA 2 cut(s) 155, 227
Hpy166II GTNNAC 2 cut(s) 125, 160
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 125, 160
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 2 cut(s) 4, 61
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 91, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 390
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 217, 337
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 8 cut(s) 76, 126, 139, 179, 326, 330, 348, 375
MaeI CTAG 1 cut(s) 201
MalI GATC 2 cut(s) 219, 339
MboI GATC 2 cut(s) 217, 337
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 2 cut(s) 273, 402
MnlI CCTC 1 cut(s) 48
MseI TTAA 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 63, 166
MspR9I CCNGG 3 cut(s) 64, 167, 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 2 cut(s) 64, 167
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 217, 337
NlaIV GGNNCC 3 cut(s) 158, 266, 370
PfeI GAWTC 3 cut(s) 31, 197, 416
PkrI GCNGC 1 cut(s) 16
PsiI TTATAA 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 158, 266, 370
PspPI GGNCC 2 cut(s) 157, 265
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 217, 337
Sau96I GGNCC 2 cut(s) 157, 265
ScrFI CCNGG 3 cut(s) 64, 167, 363
SduI GDGCHC 1 cut(s) 396
SetI ASST 8 cut(s) 72, 89, 145, 237, 319, 367, 396, 438
SfcI CTRYAG 1 cut(s) 437
SinI GGWCC 2 cut(s) 157, 265
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 273, 402
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 62, 165, 361
StyI CCWWGG 2 cut(s) 51, 268
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 273, 402
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 3 cut(s) 31, 197, 416
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 381, 394
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 381, 394
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 157, 265
XapI RAATTY 1 cut(s) 402
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.