Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

15544351 .. 15547614

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGGATGAAGGCTGCTACCATTATCTTGATTCTGCCTCTTCTTTCGTTCTTGGCTTTTGCGGGGAAGGTCGCCGATGTCAAAACCTTGCAGATTGGTGTCAAGTATAAGCCAAAGACTTGTGAACTTAAGGCTCGCAAAGGTGATAAAGTCAGGGTACACTACCGGGGAAAACTCACTGATGGAACCGTCTTTGATTCTAGTTTTGAAAGGGGTGATCCAATTGCTTTTGAGCTTGGAGTTGGTCAAGTTATAAAAGGATGGGACCAAGGAATTTCGGGAATGTGCGTTGGCGAGAAGCGGAAGTTGAAAATACCTGCACATATGGGCTATGGGGATCAGGGTTCTCCACCAACTATTCCAGGTGGTGCCACACTGATCTTCGACACTGAACTCGTTGAGATTTTGGGGAGAGATTCAGACAAAGATGCGGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

9.08

Isoelectric Point (pI)

18.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	42 - 133	2.8e-38	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	3 cut(s)	62, 301, 431
AclWI	GGATC	2 cut(s)	212, 345
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	159
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	209, 310
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	235, 436
AluI	AGCT	2 cut(s)	235, 436
AlwI	GGATC	2 cut(s)	212, 345
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	155, 227
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	368
BccI	CCATC	2 cut(s)	176, 255
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	167, 363
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	187, 266, 370
BmrFI	CCNGG	2 cut(s)	167, 363
BmsI	GCATC	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	166, 268
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	166, 268
BseGI	GGATG	2 cut(s)	12, 266
BsgI	GTGCAG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	217, 337, 378
BspACI	CCGC	3 cut(s)	62, 301, 431
BspLI	GGNNCC	3 cut(s)	187, 266, 370
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	212, 345
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	166, 268
BssMI	GATC	3 cut(s)	217, 337, 378
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	12, 266
BstKTI	GATC	3 cut(s)	220, 340, 381
BstMBI	GATC	3 cut(s)	217, 337, 378
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	165, 361
BstSFI	CTRYAG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	12, 266
BtsIMutI	CAGTG	3 cut(s)	177, 374, 387
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	7 cut(s)	14, 56, 112, 134, 235, 330, 436
CviKI_1	RGCY	7 cut(s)	14, 56, 112, 134, 235, 330, 436
CviQI	GTAC	1 cut(s)	158
DpnI	GATC	3 cut(s)	219, 339, 380
DpnII	GATC	3 cut(s)	217, 337, 378
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaiI	YATR	5 cut(s)	108, 254, 324, 326, 333
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	1 cut(s)	55
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	19, 273
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	15
HapII	CCGG	1 cut(s)	166
HinfI	GANTC	3 cut(s)	31, 197, 416
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	155, 227
Hpy166II	GTNNAC	2 cut(s)	125, 160
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	28, 279
Hpy8I	GTNNAC	2 cut(s)	125, 160
HpyAV	CCTTC	2 cut(s)	4, 61
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	91, 320
Kzo9I	GATC	3 cut(s)	217, 337, 378
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	6 cut(s)	139, 179, 326, 330, 348, 375
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	201
MalI	GATC	3 cut(s)	219, 339, 380
MboI	GATC	3 cut(s)	217, 337, 378
MboII	GAAGA	2 cut(s)	32, 373
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	2 cut(s)	222, 273
MnlI	CCTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	167, 363
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	363
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	3 cut(s)	217, 337, 378
NlaIV	GGNNCC	3 cut(s)	187, 266, 370
PfeI	GAWTC	3 cut(s)	31, 197, 416
PkrI	GCNGC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	187, 266, 370
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	217, 337, 378
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	167, 363
SetI	ASST	7 cut(s)	72, 89, 145, 237, 319, 367, 438
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	222, 273
SsiI	CCGC	3 cut(s)	62, 301, 431
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	165, 361
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	222, 273
TfiI	GAWTC	3 cut(s)	31, 197, 416
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	184, 381, 394
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	184, 381, 394
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.