Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

16902565 .. 16905118

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCACCGCTGCTGCAATGAAACTCGTTGCCATTCTCTTCTTCTTGCTGTCTCTCTCCAGCTCCGTTTTTGCGGCCAAGGAGGTCAAAGAGTTGCAGATTGGCGTCAAGTATAAGCCGGAATCTTGTGAAGTTAAGGCTCGTAAAGGTGATACAGTCAGGGTACACTATCGGGGGAAACTCACTGATGGAACTGTATTTGATTCTAGTTTTGAAAGGGGCGATCCAATCTCTTTTGAGCTTGGGACTGGTCAAGTTATAAAAGGATGGGACCAAGGATTGTTGGGAACGTGCGTAGGTGAGAAGCGGAAGTTGAAAATACCTGCAAAACTTGGTTATGGGGAGCAAGGTTCTCCACCAACCATCCCAGGTGGTGCAACACTGATATTCGACACCGAGCTGGTGGAAATTCTGGGGAGAAGTTCAAAAGCTGAAGATGAAGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

150

Amino Acids

16.08

Weight (kDa)

6.61

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	3 cut(s)	9, 74, 307
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	215, 316, 426
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	5 cut(s)	63, 241, 400, 431, 445
AluI	AGCT	5 cut(s)	63, 241, 400, 431, 445
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	11, 14
ApoI	RAATTY	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	161, 311
AvaII	GGWCC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	3 cut(s)	182, 261, 371
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	3 cut(s)	12, 15, 75
BlsI	GCNGC	3 cut(s)	13, 16, 76
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	78, 274, 367
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	78, 274, 367
BseGI	GGATG	2 cut(s)	272, 363
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	259, 284
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	259, 284
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	9, 74, 307
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	78, 274, 367
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	78, 274
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	157, 196
Bst6I	CTCTTC	2 cut(s)	44, 435
BstACI	GRCGYC	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	272, 363
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	272, 363
BtsIMutI	CAGTG	2 cut(s)	183, 380
BveI	ACCTGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	164
CviJI	RGCY	8 cut(s)	63, 77, 118, 140, 241, 400, 431, 445
CviKI_1	RGCY	8 cut(s)	63, 77, 118, 140, 241, 400, 431, 445
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	44, 435
EarI	CTCTTC	2 cut(s)	44, 435
Eco130I	CCWWGG	2 cut(s)	78, 274
Eco47I	GGWCC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	78, 274
ErhI	CCWWGG	2 cut(s)	78, 274
FaiI	YATR	3 cut(s)	114, 260, 339
FaqI	GGGAC	2 cut(s)	259, 284
Fnu4HI	GCNGC	3 cut(s)	12, 15, 75
FokI	GGATG	2 cut(s)	279, 350
Fsp4HI	GCNGC	3 cut(s)	12, 15, 75
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	3 cut(s)	12, 15, 75
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	122, 203
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	161, 311
Hpy166II	GTNNAC	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	157, 196
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	17, 97, 326, 377
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	223
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	68, 343
LpnPI	CCDG	9 cut(s)	73, 132, 145, 234, 336, 354, 381, 386, 398
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	290
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	31, 34, 446
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	408
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	122, 203
PkrI	GCNGC	3 cut(s)	13, 16, 76
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	12, 15, 75
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	9, 74, 307
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	78, 274
TaaI	ACNGT	2 cut(s)	157, 196
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	122, 203
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	190, 387
TseI	GCWGC	2 cut(s)	11, 14
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	190, 387
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.