Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014071

Physical Location & Seq

Genomic Coordinates Reverse (-)

29572759 .. 29576459

Gene Structure 3701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1166400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGGGCCGTCGCCATCCTCTTCTTCTTCCTTTTCCTTTCCAGCTCCGTTTTTGGGGACAAGGAGGTCAAAGAGTTGCAGATTGGCGTCAAGTATAAGCCGGAAACTTGTGAATTTAAGGCTCGTAAAGGTGATACAGTCAGGGTACACTATCGGGGTAAACTCACTGACGGAACTGTATTTGATTCTAGTTTTGAAAGAGGCGATCCAATCTCTTTTGAGCTTGGGACTGGTCAAGTTATAAAAGGATGGGACCAAGGATTGTTGGGAACCTGCGTAGGTGAGAAGCGTAAGTTGAAGATACCTGCAAAACTAGGTTATGGGGAGCAAGGTTCTCCACCAACCATCCCAGGTGGTGCAACACTGATATTCGAGACCGAGCTGGTGGAAATTCTGGGAAAAAATTCAAAAGCTGAAGATGAAGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

144

Amino Acids

15.73

Weight (kDa)

5.93

Isoelectric Point (pI)

23.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	39 - 129	1.7e-37	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25220 AT5G48580
fragaria_vesca	FvH4_2g18170
malus_domestica	MD05G1166400.v1.1 MD10G1156400.v1.1
prunus_persica	Prupe.8G194200_v2.0.a1
pyrus_communis	pycom05g15500 pycom10g13460
rosa_chinensis	RchiOBHm_Chr6g0283551
rosa_laevigata	RLG00000012817
rosa_multiflora	Rmu_sc0005719.1_g000006 Rmu_sc0007194.1_g000003
rosa_roxburghii	Rroxscaffold_7G00185430
rosa_rugosa	Rorug06G0155700
rosa_samantha	Rh6BG270100 Rh6CG269900
rosa_wichuraiana	Rw6G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	2 cut(s)	281, 313
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	113, 390, 403
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	197, 298, 408
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	45, 223, 382, 413, 427
AluI	AGCT	5 cut(s)	45, 223, 382, 413, 427
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	3 cut(s)	113, 390, 403
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	6, 253
AsuHPI	GGTGA	2 cut(s)	143, 293
AvaII	GGWCC	1 cut(s)	253
BccI	CCATC	3 cut(s)	23, 243, 353
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	189, 314
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	2 cut(s)	281, 313
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	6, 253
BmiI	GGNNCC	2 cut(s)	254, 271
BmrFI	CCNGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	256, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	256, 349
BseGI	GGATG	3 cut(s)	15, 254, 345
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	3 cut(s)	71, 241, 266
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	71, 241, 266
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	254, 271
BspMI	ACCTGC	2 cut(s)	281, 313
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	256, 349
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	139, 178
Bst6I	CTCTTC	2 cut(s)	26, 417
BstACI	GRCGYC	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	15, 254, 345
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	15, 254, 345
BtsIMutI	CAGTG	2 cut(s)	165, 362
BveI	ACCTGC	2 cut(s)	281, 313
Cfr13I	GGNCC	2 cut(s)	6, 253
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	8 cut(s)	8, 45, 100, 122, 223, 382, 413, 427
CviKI_1	RGCY	8 cut(s)	8, 45, 100, 122, 223, 382, 413, 427
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	26, 417
EarI	CTCTTC	2 cut(s)	26, 417
Eco130I	CCWWGG	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaiI	YATR	3 cut(s)	96, 242, 321
FaqI	GGGAC	3 cut(s)	71, 241, 266
FokI	GGATG	3 cut(s)	2, 261, 332
FspBI	CTAG	2 cut(s)	189, 314
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	143, 293
Hpy166II	GTNNAC	2 cut(s)	148, 161
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	148, 161
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	139, 178
HpyCH4V	TGCA	3 cut(s)	79, 308, 359
Hsp92I	GRCGYC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	50, 325
MaeI	CTAG	2 cut(s)	189, 314
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	5 cut(s)	13, 16, 19, 310, 428
MluCI	AATT	3 cut(s)	113, 390, 403
MnlI	CCTC	3 cut(s)	29, 58, 194
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	254, 271
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	254, 271
PspPI	GGNCC	2 cut(s)	6, 253
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	6, 253
ScrFI	CCNGG	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	3 cut(s)	113, 390, 403
SspMI	CTAG	2 cut(s)	189, 314
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	139, 178
TaqI	TCGA	1 cut(s)	372
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	113, 390, 403
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	172, 369
TspGWI	ACGGA	2 cut(s)	37, 186
TspRI	CASTG	2 cut(s)	172, 369
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	3 cut(s)	113, 390, 403
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	189, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.