AT3G25260

Proton-dependent oligopeptide transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007992
Physical Location & Seq
Forward (+)
9199438 .. 9202000
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25260.1

Sequence Viewer

Length: 1548 bp
ATGCAGATTGAGATGGAAGAGAAGTTTGAAGATTGGAGAGGCAAAGAGGCAATTTCTGGCAAACATGGTGGGATTAAAGCTGCTTTCATTGCTTGTGTTGTAGAGACGATGGAGAATATGGTGTTCTTAGCATGTTCAACCAACTTCATGATGTACTTTACGAAATCAATGAATTACTCAACACCCAAAGCAGCAACCATGGTGACTAATTTCGTAGGGACATCGTTTTTGCTCACTATTTTCGGTGGTTTTGTCGCGGACTCTTTTCTCACTCGCTTCGCTGCTTTCGTCCTCTTTGGTTCCATTGAACTCCTGGGTTTGATCATGTTGACACTCCAAGCTCATATCACTAAGTTACAACCTCAAGGAGGTAAAAAACCTTCGACTCCTCAATCAACGGTTCTATTCACTGGACTTTATGCAATAGCTATTGGTGTTGGAGGTGTCAAGGGGTCGTTGCCTGCTCATGGAGGCGACCAGATCGGTACTAGAAACCAGAGGCTGATCTCAGGATTCTTCAATTGGTATTTCTTCTCTGTCTGCCTTGGAGGTTTCTTGGCAGTAACACTTATGGTTTGGATCGAGGAGAACATAGGATGGAGCTCCAGCTTCACTATATCTACCGCGGTTTTAGCCTCTGCGATCTTCGTTTTCGTTGCGGGATGCCCGATGTATCGATTCAAGCGCCCAGCAGGGAGTCCTTTGACCAGAATTGTGAATGTGTTTGTTTCTGCCGCAAGAAACCGAAATAGGTTTGTAACGGATGCAGAGGTGGTGACACAGAATCATAACTCTACCGACAAAAGCATTCATCACAACAAGTTCAAGTTTTTGAATAAAGCAAAGCTCAACAACAAGATATCAGCAACACAAGTTGAAGAAACAAGAACGTTTCTAGCTCTCCTTCCAATATTTGGGAGCACAATTATAATGAACTGTTGTGTCGCACAAATGGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAACTCTCGCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTACTGTGCATGCTCTCTTCTTTAGCTTTATACGAGCTTTTCGGCAAAAGGATCTTATCCAATAGCGAAAGATCGTCCAGCTTCAATTTGAAACGTATAGGATACGGTTTAGCTCTCACCTCTATTTCAATGGCGGTTGCAGCCATCGTGGAGGTCAAAAGAAAACATGAAGCGGTTCACAACAACATCAAGATTTCTGTGTTCTGGCTAGAGCTTCAATTTGTTATGTTGAGTCTCTCGGATATGTTGACTGTTGGAGGAATGTTAGAGTTCTTCTTTAGAGAATCTCCAGCGAGTATGAGGAGCATGAGCACCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTCTTGTGGAGGTTGTTAATGGCATCACGGGATGGCTCCGCGACGATCTTAATGAGTCCAGGCTCGAACTATTTTATTTGGTTTTATGTGTTCTTAATACCCTTAATCTTTTTAATTATATTTTCTGGGCGAAAAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

515

Amino Acids

57.16

Weight (kDa)

9.38

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 94 - 478 1.4e-77 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AccB7I CCANNNNNTGG 1 cut(s) 914
AccII CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
AclI AACGTT 1 cut(s) 890
AclWI GGATC 3 cut(s) 587, 1009, 1103
AfaI GTAC 2 cut(s) 155, 487
AfiI CCNNNNNNNGG 5 cut(s) 368, 467, 914, 1365, 1402
AjnI CCWGG 2 cut(s) 312, 1463
Alw21I GWGCWC 4 cut(s) 605, 923, 1358, 1376
Alw26I GTCTC 2 cut(s) 98, 1283
AlwI GGATC 3 cut(s) 587, 1009, 1103
AlwNI CAGNNNCTG 1 cut(s) 502
ApeKI GCWGC 4 cut(s) 80, 191, 281, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 687
AsuHPI GGTGA 4 cut(s) 214, 787, 994, 1153
BanII GRGCYC 1 cut(s) 605
BarI GAAGNNNNNNTAC 2 cut(s) 364, 396
Bbv12I GWGCWC 4 cut(s) 605, 923, 1358, 1376
BbvCI CCTCAGC 1 cut(s) 1397
BbvI GCAGC 4 cut(s) 67, 203, 268, 1196
BccI CCATC 5 cut(s) 7, 103, 591, 1196, 1431
BciT130I CCWGG 2 cut(s) 314, 1465
BciVI GTATCC 1 cut(s) 1139
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 98, 1283
BfaI CTAG 3 cut(s) 489, 896, 1253
BfoI RGCGCY 1 cut(s) 688
BfuI GTATCC 1 cut(s) 1139
BisI GCNGC 5 cut(s) 81, 192, 282, 735, 1185
BlsI GCNGC 5 cut(s) 82, 193, 283, 736, 1186
Bme1390I CCNGG 2 cut(s) 314, 1465
BmiI GGNNCC 3 cut(s) 301, 958, 1442
BmrFI CCNGG 2 cut(s) 314, 1465
BmsI GCATC 3 cut(s) 653, 754, 1437
BpmI CTGGAG 2 cut(s) 589, 1317
Bpu10I CCTNAGC 1 cut(s) 1397
BpuEI CTTGAG 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 676
BsaJI CCNNGG 5 cut(s) 198, 313, 544, 624, 1020
Bsc4I CCNNNNNNNGG 5 cut(s) 368, 467, 914, 1365, 1402
Bse1I ACTGG 1 cut(s) 415
Bse3DI GCAATG 2 cut(s) 87, 1389
BseBI CCWGG 2 cut(s) 314, 1465
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 198, 313, 544, 624, 1020
BseGI GGATG 4 cut(s) 602, 668, 769, 1442
BseLI CCNNNNNNNGG 5 cut(s) 368, 467, 914, 1365, 1402
BseMI GCAATG 2 cut(s) 87, 1389
BseMII CTCAG 2 cut(s) 522, 1411
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 3 cut(s) 378, 599, 1360
BseXI GCAGC 4 cut(s) 67, 203, 268, 1196
BseYI CCCAGC 1 cut(s) 688
Bsh1236I CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
BshVI ATCGAT 1 cut(s) 676
BsiHKAI GWGCWC 4 cut(s) 605, 923, 1358, 1376
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 5 cut(s) 368, 467, 914, 1365, 1402
BsmAI GTCTC 2 cut(s) 98, 1283
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 807
Bsp1286I GDGCHC 4 cut(s) 605, 923, 1358, 1376
Bsp143I GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
Bsp19I CCATGG 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 521, 1410
BspDI ATCGAT 1 cut(s) 676
BspFNI CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 301, 958, 1442
BspPI GGATC 3 cut(s) 587, 1009, 1103
BsrDI GCAATG 2 cut(s) 87, 1389
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 5 cut(s) 198, 313, 544, 624, 1020
BssMI GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
BssT1I CCWWGG 2 cut(s) 198, 544
Bst2UI CCWGG 2 cut(s) 314, 1465
Bst4CI ACNGT 5 cut(s) 400, 938, 1050, 1151, 1297
Bst6I CTCTTC 2 cut(s) 12, 1066
BstC8I GCNNGC 2 cut(s) 462, 1055
BstDEI CTNAG 4 cut(s) 127, 351, 508, 1397
BstDSI CCRYGG 3 cut(s) 198, 624, 1020
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 602, 668, 769, 1442
BstFNI CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 9 cut(s) 324, 483, 507, 582, 645, 1017, 1098, 1118, 1453
BstMAI GTCTC 2 cut(s) 98, 1283
BstMBI GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
BstMWI GCNNNNNNNGC 3 cut(s) 89, 632, 1184
BstNI CCWGG 2 cut(s) 314, 1465
BstNSI RCATGY 2 cut(s) 135, 1057
BstSCI CCNGG 2 cut(s) 312, 1463
BstUI CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
BstV1I GCAGC 4 cut(s) 67, 203, 268, 1196
BstX2I RGATCY 2 cut(s) 1014, 1095
BstXI CCANNNNNNTGG 1 cut(s) 1384
BstYI RGATCY 2 cut(s) 1014, 1095
Bsu15I ATCGAT 1 cut(s) 676
BsuI GTATCC 1 cut(s) 1139
BsuTUI ATCGAT 1 cut(s) 676
BtgI CCRYGG 3 cut(s) 198, 624, 1020
BtsCI GGATG 4 cut(s) 602, 668, 769, 1442
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 462, 1055
CaiI CAGNNNCTG 1 cut(s) 502
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 687
Cfr42I CCGCGG 1 cut(s) 627
ClaI ATCGAT 1 cut(s) 676
Csp6I GTAC 2 cut(s) 154, 486
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviQI GTAC 2 cut(s) 154, 486
DdeI CTNAG 4 cut(s) 127, 351, 508, 1397
DpnI GATC 9 cut(s) 323, 482, 506, 581, 644, 1016, 1097, 1117, 1452
DpnII GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
Eam1104I CTCTTC 2 cut(s) 12, 1066
EarI CTCTTC 2 cut(s) 12, 1066
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 198, 544
Eco24I GRGCYC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 861
Eco53kI GAGCTC 1 cut(s) 603
EcoICRI GAGCTC 1 cut(s) 603
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 312, 1463
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 2 cut(s) 198, 544
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 2 cut(s) 198, 544
Esp3I CGTCTC 1 cut(s) 98
FaqI GGGAC 1 cut(s) 232
FauI CCCGC 1 cut(s) 652
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 81, 192, 282, 735, 1185
FokI GGATG 4 cut(s) 609, 675, 776, 1449
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 5 cut(s) 81, 192, 282, 735, 1185
FspBI CTAG 3 cut(s) 489, 896, 1253
GlaI GCGC 1 cut(s) 686
GluI GCNGC 5 cut(s) 81, 192, 282, 735, 1185
GsaI CCCAGC 1 cut(s) 692
GsuI CTGGAG 2 cut(s) 589, 1317
HaeII RGCGCY 1 cut(s) 688
HhaI GCGC 1 cut(s) 687
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HincII GTYRAC 2 cut(s) 330, 1293
HindII GTYRAC 2 cut(s) 330, 1293
HinfI GANTC 9 cut(s) 260, 385, 513, 678, 697, 784, 1276, 1328, 1460
HphI GGTGA 4 cut(s) 214, 787, 994, 1153
Hpy166II GTNNAC 3 cut(s) 330, 1222, 1293
Hpy188I TCNGA 1 cut(s) 1285
Hpy188III TCNNGA 3 cut(s) 148, 510, 1234
Hpy8I GTNNAC 3 cut(s) 330, 1222, 1293
Hpy99I CGWCG 1 cut(s) 1451
HpyAV CCTTC 3 cut(s) 390, 914, 970
HpyCH4III ACNGT 5 cut(s) 400, 938, 1050, 1151, 1297
HpyCH4IV ACGT 2 cut(s) 890, 1138
HpyCH4V TGCA 5 cut(s) 4, 422, 767, 1053, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 632, 1184
HpyF3I CTNAG 4 cut(s) 127, 351, 508, 1397
HpySE526I ACGT 2 cut(s) 890, 1138
HspAI GCGC 1 cut(s) 685
Ksp22I TGATCA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 627
Kzo9I GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
LmnI GCTCC 6 cut(s) 600, 608, 918, 1347, 1379, 1446
Lsp1109I GCAGC 4 cut(s) 67, 203, 268, 1196
LweI GCATC 3 cut(s) 653, 754, 1437
MaeI CTAG 3 cut(s) 489, 896, 1253
MaeII ACGT 2 cut(s) 890, 1138
MaeIII GTNAC 6 cut(s) 202, 354, 562, 757, 775, 982
MalI GATC 9 cut(s) 323, 482, 506, 581, 644, 1016, 1097, 1117, 1452
MboI GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
MboII GAAGA 9 cut(s) 29, 41, 508, 523, 637, 890, 1053, 1309, 1384
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 2 cut(s) 1014, 1095
MhlI GDGCHC 4 cut(s) 605, 923, 1358, 1376
MluCI AATT 9 cut(s) 51, 172, 208, 520, 711, 924, 1129, 1262, 1519
MlyI GAGTC 5 cut(s) 254, 379, 706, 1285, 1469
MmeI TCCRAC 2 cut(s) 418, 1279
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 6 cut(s) 75, 1422, 1455, 1500, 1509, 1518
MslI CAYNNNNRTG 1 cut(s) 1382
MspA1I CMGCKG 1 cut(s) 626
MspR9I CCNGG 2 cut(s) 314, 1465
MunI CAATTG 1 cut(s) 520
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 2 cut(s) 314, 1465
MvnI CGCG 5 cut(s) 257, 626, 1003, 1361, 1446
MwoI GCNNNNNNNGC 3 cut(s) 89, 632, 1184
NcoI CCATGG 1 cut(s) 198
NdeII GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
NlaIV GGNNCC 3 cut(s) 301, 958, 1442
NmuCI GTSAC 3 cut(s) 202, 775, 982
NspI RCATGY 2 cut(s) 135, 1057
PaeI GCATGC 1 cut(s) 1057
PagI TCATGA 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 807
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 4 cut(s) 513, 678, 784, 1328
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 5 cut(s) 82, 193, 283, 736, 1186
PleI GAGTC 5 cut(s) 254, 379, 705, 1284, 1468
PpsI GAGTC 5 cut(s) 254, 379, 705, 1284, 1468
PsiI TTATAA 1 cut(s) 929
Psp124BI GAGCTC 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 890
Psp6I CCWGG 2 cut(s) 312, 1463
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 2 cut(s) 312, 1463
PspN4I GGNNCC 3 cut(s) 301, 958, 1442
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 1014, 1095
RsaI GTAC 2 cut(s) 155, 487
RsaNI GTAC 2 cut(s) 154, 486
RseI CAYNNNNRTG 1 cut(s) 1382
SacI GAGCTC 1 cut(s) 605
SacII CCGCGG 1 cut(s) 627
SaqAI TTAA 6 cut(s) 75, 1422, 1455, 1500, 1509, 1518
SatI GCNGC 5 cut(s) 81, 192, 282, 735, 1185
Sau3AI GATC 9 cut(s) 321, 480, 504, 579, 642, 1014, 1095, 1115, 1450
SchI GAGTC 5 cut(s) 254, 379, 706, 1285, 1469
ScrFI CCNGG 2 cut(s) 314, 1465
SduI GDGCHC 4 cut(s) 605, 923, 1358, 1376
SfaNI GCATC 3 cut(s) 653, 754, 1437
Sfr303I CCGCGG 1 cut(s) 627
SgrBI CCGCGG 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 1382
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 9 cut(s) 51, 172, 208, 520, 711, 924, 1129, 1262, 1519
SspI AATATT 1 cut(s) 912
SspMI CTAG 3 cut(s) 489, 896, 1253
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 312, 1463
StyI CCWWGG 2 cut(s) 198, 544
TaaI ACNGT 5 cut(s) 400, 938, 1050, 1151, 1297
TaiI ACGT 2 cut(s) 893, 1141
TaqI TCGA 4 cut(s) 383, 582, 676, 1470
TasI AATT 9 cut(s) 51, 172, 208, 520, 711, 924, 1129, 1262, 1519
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 4 cut(s) 513, 678, 784, 1328
Tru1I TTAA 6 cut(s) 75, 1422, 1455, 1500, 1509, 1518
Tru9I TTAA 6 cut(s) 75, 1422, 1455, 1500, 1509, 1518
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 3 cut(s) 202, 775, 982
TseI GCWGC 4 cut(s) 80, 191, 281, 1184
Tsp45I GTSAC 3 cut(s) 202, 775, 982
TspDTI ATGAA 6 cut(s) 76, 136, 185, 800, 947, 1227
TspGWI ACGGA 2 cut(s) 776, 955
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 914
XagI CCTNNNNNAGG 1 cut(s) 366
XceI RCATGY 2 cut(s) 135, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 3 cut(s) 489, 896, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.