Rmu_sc0023711.1_g000001

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023711.1
Physical Location & Seq
Reverse (-)
545 .. 2918
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023711.1_g000001.1.cds

Sequence Viewer

Length: 1494 bp
atggagatagatacctaccagaaagaaagtgatgatcagtatgttgattggaaaggaagaaaggcaaatcctaatatcaatggtggaattagagctgctgcctttgcatgtgttgttgaggtctttaccaacatggttttcttatgcaatgccagtaactttgtcacatacttcacaaagtcaatgcattatccacctgctaaatcagcaaatatggtcaccaatttcatgggaacctcttttttgctcaccatcatgggaggctttatcagtgactcactcttcactagattcacaaccttcattctttcctgcataattgagttgctgggactaatcttgctgacaatccaatctcaaagcagaaggttacggccggcattgaatttaaagccttctcagtctcaagcagcaattctgtacactggcctttacgccattgctgctggtgctgctggactcaatgccaacttacctgcacatggtgctgatcagcttgatcacagcaatcagagacagatctctgccttcttcaattggtttttcttttccttatgcactggtggactcattagctcaactgtcatggtttgggtggaagagaacaaaggctggaattggagctttcccataacagttatagttttgagtttggcgcttcttatcttcatcagtggaagtccattttataggcacaaacgacccactgggagctcattaacaaggatcgtcaagagggtgatcttgaaagtgaatggtttctttcaagagaataggttcctggacaaagcattaatagacaacagagtcaatgcagctgaaattaaggaaacaagaacttttcttggccttttacctatatttgcaagcacaatcatgatgaactgttgcctagctcaacttcaaacattctccgtggtacaagggagcataatgaataggaaactacataactttgaaattccgactccatcattaacagtaatccctcttatcatcatgctatcctccattcccttatacgaacgattacattctggaaataacatcatcttcaaaccaccctggaggatcggactggggctagcactagcatcaggctcaatggccgtagctgctctcgtcgaagctaagaggcgtgcagaggctgctgacagcaatgtgatatcggtattttggctcgggtggcaattcctgttgctaggagtgtctgatatgctcactcttggaggaatgctcgagttcttttactccgaggcacctaatagcatgagaagcatgtgcattgctttgtcatggtgctcaacatcaatggggtacttcttgagctcagtgctggtgtccatagtaaattcagttagtggaaaatatgggaaagagtggcttggagggatgaatttgaatcatgggcgcttggatctgttttacacacttcttagcattctcaactccctgaattttctcaactacatgtattgggcaaaaaggtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

55.45

Weight (kDa)

9.31

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
AasI GACNNNNNNGTC 1 cut(s) 806
Acc36I ACCTGC 2 cut(s) 205, 484
AccB1I GGYRCC 1 cut(s) 1258
AclWI GGATC 3 cut(s) 734, 1079, 1425
AcoI YGGCCR 2 cut(s) 374, 1107
AcsI RAATTY 5 cut(s) 385, 960, 1351, 1396, 1456
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 422, 921, 1319
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 1470
AgsI TTSAA 8 cut(s) 385, 535, 748, 767, 905, 959, 1057, 1402
AjnI CCWGG 2 cut(s) 780, 1064
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
Alw21I GWGCWC 3 cut(s) 716, 1304, 1331
Alw26I GTCTC 2 cut(s) 408, 508
AlwI GGATC 3 cut(s) 734, 1079, 1425
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 2 cut(s) 1181, 1238
AoxI GGCC 4 cut(s) 374, 427, 847, 1107
ApeKI GCWGC 8 cut(s) 95, 98, 410, 443, 452, 815, 1115, 1148
ApoI RAATTY 5 cut(s) 385, 960, 1351, 1396, 1456
AseI ATTAAT 1 cut(s) 794
Asp700I GAANNNNTTC 2 cut(s) 758, 776
AspLEI GCGC 2 cut(s) 658, 1413
AsuHPI GGTGA 3 cut(s) 211, 241, 751
AsuNHI GCTAGC 1 cut(s) 1084
AvaI CYCGRG 2 cut(s) 1181, 1238
BanI GGYRCC 1 cut(s) 1258
BanII GRGCYC 2 cut(s) 716, 1331
Bbv12I GWGCWC 3 cut(s) 716, 1304, 1331
BbvI GCAGC 8 cut(s) 82, 85, 422, 430, 439, 827, 1102, 1135
BccI CCATC 2 cut(s) 260, 979
BceAI ACGGC 2 cut(s) 389, 1094
BciT130I CCWGG 2 cut(s) 782, 1066
BclI TGATCA 3 cut(s) 34, 490, 499
BcoDI GTCTC 2 cut(s) 408, 508
BfaI CTAG 5 cut(s) 288, 893, 1085, 1091, 1202
BfoI RGCGCY 2 cut(s) 659, 1414
BfuAI ACCTGC 2 cut(s) 205, 484
BglII AGATCT 1 cut(s) 519
BisI GCNGC 8 cut(s) 96, 99, 411, 444, 453, 816, 1116, 1149
BlsI GCNGC 8 cut(s) 97, 100, 412, 445, 454, 817, 1117, 1150
Bme1390I CCNGG 2 cut(s) 782, 1066
BmeT110I CYCGRG 2 cut(s) 1181, 1238
BmiI GGNNCC 3 cut(s) 235, 779, 1260
BmrFI CCNGG 2 cut(s) 782, 1066
BmrI ACTGGG 2 cut(s) 717, 1088
BmsI GCATC 1 cut(s) 1103
BmtI GCTAGC 1 cut(s) 1088
BmuI ACTGGG 2 cut(s) 717, 1088
BplI GAGNNNNNCTC 2 cut(s) 1221, 1253
BpmI CTGGAG 1 cut(s) 1087
BpuEI CTTGAG 2 cut(s) 390, 1345
BsaJI CCNNGG 3 cut(s) 915, 1064, 1254
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 5 cut(s) 153, 430, 565, 712, 1083
Bse3DI GCAATG 4 cut(s) 154, 438, 1165, 1284
BseBI CCWGG 2 cut(s) 782, 1066
BseDI CCNNGG 3 cut(s) 915, 1064, 1254
BseGI GGATG 1 cut(s) 1398
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 4 cut(s) 154, 438, 1165, 1284
BseMII CTCAG 2 cut(s) 413, 1344
BseNI ACTGG 5 cut(s) 153, 430, 565, 712, 1083
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 8 cut(s) 82, 85, 422, 430, 439, 827, 1102, 1135
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 2 cut(s) 462, 1161
Bsh1285I CGRYCG 1 cut(s) 377
BshFI GGCC 4 cut(s) 376, 429, 849, 1109
BshNI GGYRCC 1 cut(s) 1258
BsiEI CGRYCG 1 cut(s) 377
BsiHKAI GWGCWC 3 cut(s) 716, 1304, 1331
BsiHKCI CYCGRG 2 cut(s) 1181, 1238
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 408, 508
BsmFI GGGAC 1 cut(s) 345
BsmI GAATGC 2 cut(s) 1239, 1440
BsnI GGCC 4 cut(s) 376, 429, 849, 1109
BsoBI CYCGRG 2 cut(s) 1181, 1238
Bsp1286I GDGCHC 3 cut(s) 716, 1304, 1331
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
BspANI GGCC 4 cut(s) 376, 429, 849, 1109
BspCNI CTCAG 2 cut(s) 412, 1343
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 3 cut(s) 235, 779, 1260
BspMI ACCTGC 2 cut(s) 205, 484
BspOI GCTAGC 1 cut(s) 1088
BspPI GGATC 3 cut(s) 734, 1079, 1425
BspT107I GGYRCC 1 cut(s) 1258
BsrDI GCAATG 4 cut(s) 154, 438, 1165, 1284
BsrFI RCCGGY 1 cut(s) 376
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 5 cut(s) 153, 430, 565, 712, 1083
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 915, 1064, 1254
BssMI GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
Bst2UI CCWGG 2 cut(s) 782, 1066
Bst4CI ACNGT 4 cut(s) 583, 637, 887, 982
Bst6I CTCTTC 2 cut(s) 287, 594
BstAPI GCANNNNNTGC 2 cut(s) 485, 1148
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 378, 868, 1086, 1140
BstDEI CTNAG 4 cut(s) 399, 1131, 1330, 1436
BstDSI CCRYGG 1 cut(s) 915
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 1398
BstH2I RGCGCY 2 cut(s) 659, 1414
BstHHI GCGC 2 cut(s) 658, 1413
BstKTI GATC 8 cut(s) 37, 493, 502, 522, 729, 744, 1074, 1420
BstMAI GTCTC 2 cut(s) 408, 508
BstMBI GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
BstMCI CGRYCG 1 cut(s) 377
BstNI CCWGG 2 cut(s) 782, 1066
BstNSI RCATGY 3 cut(s) 111, 1282, 1474
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 780, 1064
BstV1I GCAGC 8 cut(s) 82, 85, 422, 430, 439, 827, 1102, 1135
BstX2I RGATCY 2 cut(s) 519, 1417
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 519, 1417
BstZI CGGCCG 1 cut(s) 374
BsuRI GGCC 4 cut(s) 376, 429, 849, 1109
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 1398
BtsIMutI CAGTG 6 cut(s) 277, 423, 558, 679, 705, 1338
BveI ACCTGC 2 cut(s) 205, 484
Cac8I GCNNGC 4 cut(s) 378, 868, 1086, 1140
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 1 cut(s) 876
CfoI GCGC 2 cut(s) 658, 1413
Cfr10I RCCGGY 1 cut(s) 376
Csp6I GTAC 3 cut(s) 421, 920, 1318
CviQI GTAC 3 cut(s) 421, 920, 1318
DdeI CTNAG 4 cut(s) 399, 1131, 1330, 1436
DpnI GATC 8 cut(s) 36, 492, 501, 521, 728, 743, 1073, 1419
DpnII GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
DraI TTTAAA 1 cut(s) 390
DraIII CACNNNGTG 1 cut(s) 485
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 374, 1107
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 287, 594
EarI CTCTTC 2 cut(s) 287, 594
Ecl136II GAGCTC 2 cut(s) 714, 1329
EclXI CGGCCG 1 cut(s) 374
Eco24I GRGCYC 2 cut(s) 716, 1331
Eco32I GATATC 1 cut(s) 1167
Eco52I CGGCCG 1 cut(s) 374
Eco53kI GAGCTC 2 cut(s) 714, 1329
Eco88I CYCGRG 2 cut(s) 1181, 1238
Eco91I GGTNACC 1 cut(s) 217
EcoICRI GAGCTC 2 cut(s) 714, 1329
EcoO65I GGTNACC 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 780, 1064
EcoRV GATATC 1 cut(s) 1167
EcoT22I ATGCAT 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 716, 1331
FalI AAGNNNNNCTT 2 cut(s) 1368, 1400
FaqI GGGAC 1 cut(s) 345
FbaI TGATCA 3 cut(s) 34, 490, 499
Fnu4HI GCNGC 8 cut(s) 96, 99, 411, 444, 453, 816, 1116, 1149
FokI GGATG 1 cut(s) 1405
FriOI GRGCYC 2 cut(s) 716, 1331
Fsp4HI GCNGC 8 cut(s) 96, 99, 411, 444, 453, 816, 1116, 1149
FspBI CTAG 5 cut(s) 288, 893, 1085, 1091, 1202
GlaI GCGC 2 cut(s) 657, 1412
GluI GCNGC 8 cut(s) 96, 99, 411, 444, 453, 816, 1116, 1149
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 1087
HaeII RGCGCY 2 cut(s) 659, 1414
HaeIII GGCC 4 cut(s) 376, 429, 849, 1109
HapII CCGG 1 cut(s) 377
HhaI GCGC 2 cut(s) 658, 1413
Hin6I GCGC 2 cut(s) 656, 1411
HinP1I GCGC 2 cut(s) 656, 1411
HinfI GANTC 7 cut(s) 275, 291, 459, 567, 807, 967, 1402
HpaII CCGG 1 cut(s) 377
HphI GGTGA 3 cut(s) 211, 241, 751
Hpy166II GTNNAC 2 cut(s) 423, 566
Hpy188I TCNGA 5 cut(s) 513, 966, 1076, 1213, 1255
Hpy188III TCNNGA 6 cut(s) 733, 745, 767, 877, 1038, 1324
Hpy8I GTNNAC 2 cut(s) 423, 566
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 4 cut(s) 310, 360, 405, 538
HpyCH4III ACNGT 4 cut(s) 583, 637, 887, 982
HpyF3I CTNAG 4 cut(s) 399, 1131, 1330, 1436
HspAI GCGC 2 cut(s) 656, 1411
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Ksp22I TGATCA 3 cut(s) 34, 490, 499
Kzo9I GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
LmnI GCTCC 3 cut(s) 621, 711, 927
Lsp1109I GCAGC 8 cut(s) 82, 85, 422, 430, 439, 827, 1102, 1135
LweI GCATC 1 cut(s) 1103
MaeI CTAG 5 cut(s) 288, 893, 1085, 1091, 1202
MaeIII GTNAC 5 cut(s) 155, 163, 217, 272, 369
MalI GATC 8 cut(s) 36, 492, 501, 521, 728, 743, 1073, 1419
MboI GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
MboII GAAGA 6 cut(s) 69, 274, 523, 611, 658, 1045
MfeI CAATTG 1 cut(s) 535
MflI RGATCY 2 cut(s) 519, 1417
MhlI GDGCHC 3 cut(s) 716, 1304, 1331
MlyI GAGTC 5 cut(s) 269, 453, 561, 816, 961
MmeI TCCRAC 1 cut(s) 989
Mph1103I ATGCAT 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 758, 776
MseI TTAA 5 cut(s) 389, 719, 794, 825, 977
MslI CAYNNNNRTG 2 cut(s) 254, 875
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 2 cut(s) 782, 1066
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 2 cut(s) 1239, 1440
MvaI CCWGG 2 cut(s) 782, 1066
NaeI GCCGGC 1 cut(s) 378
NdeII GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
NgoMIV GCCGGC 1 cut(s) 376
NheI GCTAGC 1 cut(s) 1084
NlaIV GGNNCC 3 cut(s) 235, 779, 1260
NmuCI GTSAC 3 cut(s) 163, 217, 272
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 3 cut(s) 111, 1282, 1474
PaeR7I CTCGAG 1 cut(s) 1238
PagI TCATGA 1 cut(s) 876
PaqCI CACCTGC 1 cut(s) 205
PciI ACATGT 1 cut(s) 1470
PctI GAATGC 2 cut(s) 1239, 1440
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 2 cut(s) 758, 776
PfeI GAWTC 2 cut(s) 291, 1402
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 8 cut(s) 97, 100, 412, 445, 454, 817, 1117, 1150
PleI GAGTC 5 cut(s) 269, 453, 561, 815, 961
PpsI GAGTC 5 cut(s) 269, 453, 561, 815, 961
PscI ACATGT 1 cut(s) 1470
PshBI ATTAAT 1 cut(s) 794
Psp124BI GAGCTC 2 cut(s) 716, 1331
Psp6I CCWGG 2 cut(s) 780, 1064
PspEI GGTNACC 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 780, 1064
PspN4I GGNNCC 3 cut(s) 235, 779, 1260
PspXI VCTCGAGB 1 cut(s) 1238
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 2 cut(s) 519, 1417
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 3 cut(s) 422, 921, 1319
RsaNI GTAC 3 cut(s) 421, 920, 1318
RseI CAYNNNNRTG 2 cut(s) 254, 875
SacI GAGCTC 2 cut(s) 716, 1331
SaqAI TTAA 5 cut(s) 389, 719, 794, 825, 977
SatI GCNGC 8 cut(s) 96, 99, 411, 444, 453, 816, 1116, 1149
Sau3AI GATC 8 cut(s) 34, 490, 499, 519, 726, 741, 1071, 1417
SchI GAGTC 5 cut(s) 269, 453, 561, 816, 961
ScrFI CCNGG 2 cut(s) 782, 1066
SduI GDGCHC 3 cut(s) 716, 1304, 1331
SfaNI GCATC 1 cut(s) 1103
Sfr274I CTCGAG 1 cut(s) 1238
SlaI CTCGAG 1 cut(s) 1238
SmiMI CAYNNNNRTG 2 cut(s) 254, 875
SmlI CTYRAG 3 cut(s) 405, 1238, 1324
SmoI CTYRAG 3 cut(s) 405, 1238, 1324
SspMI CTAG 5 cut(s) 288, 893, 1085, 1091, 1202
SstI GAGCTC 2 cut(s) 716, 1331
StyD4I CCNGG 2 cut(s) 780, 1064
TaaI ACNGT 4 cut(s) 583, 637, 887, 982
TaqI TCGA 2 cut(s) 1125, 1239
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 2 cut(s) 291, 1402
Tru1I TTAA 5 cut(s) 389, 719, 794, 825, 977
Tru9I TTAA 5 cut(s) 389, 719, 794, 825, 977
TscAI CASTG 6 cut(s) 277, 430, 565, 679, 712, 1338
TseFI GTSAC 3 cut(s) 163, 217, 272
TseI GCWGC 8 cut(s) 95, 98, 410, 443, 452, 815, 1115, 1148
Tsp45I GTSAC 3 cut(s) 163, 217, 272
TspDTI ATGAA 6 cut(s) 217, 292, 658, 896, 950, 1409
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 6 cut(s) 277, 430, 565, 679, 712, 1338
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 5 cut(s) 385, 960, 1351, 1396, 1456
XceI RCATGY 3 cut(s) 111, 1282, 1474
XhoI CTCGAG 1 cut(s) 1238
XmnI GAANNNNTTC 2 cut(s) 758, 776
XspI CTAG 5 cut(s) 288, 893, 1085, 1091, 1202
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.