AT3G25280

Proton-dependent oligopeptide transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007992
Physical Location & Seq
Forward (+)
9206183 .. 9208036
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25280.1

Sequence Viewer

Length: 1566 bp
ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGGAAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATAGTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACACCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTTTTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGTTGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTGCCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTACGCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAAATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATATGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGGATATGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGTAGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAATTGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCGAGGTCTTATCTCTATCTACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAGCAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTCTTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCTTCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCGTACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAATTCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAACGCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGGCCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGTTTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCTTTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAACCGCATTAGGTTTCTTTCTTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGAAGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTTTATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAGAGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

521

Amino Acids

58.35

Weight (kDa)

9.15

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 93 - 480 1.7e-81 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 911
AciI CCGC 6 cut(s) 441, 735, 963, 1032, 1178, 1380
AclI AACGTT 2 cut(s) 842, 887
AclWI GGATC 4 cut(s) 80, 172, 587, 1006
AcoI YGGCCR 2 cut(s) 558, 1444
AcsI RAATTY 2 cut(s) 627, 1076
AcuI CTGAAG 1 cut(s) 1216
AfaI GTAC 2 cut(s) 436, 1020
AfiI CCNNNNNNNGG 2 cut(s) 467, 911
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 7 cut(s) 80, 131, 341, 609, 933, 1157, 1331
AluI AGCT 7 cut(s) 80, 131, 341, 609, 933, 1157, 1331
Alw21I GWGCWC 1 cut(s) 1506
Alw26I GTCTC 1 cut(s) 1285
AlwI GGATC 4 cut(s) 80, 172, 587, 1006
AlwNI CAGNNNCTG 1 cut(s) 1267
AoxI GGCC 4 cut(s) 558, 1150, 1197, 1444
ApeKI GCWGC 4 cut(s) 80, 191, 933, 936
ApoI RAATTY 2 cut(s) 627, 1076
Asp700I GAANNNNTTC 2 cut(s) 155, 1218
AspLEI GCGC 1 cut(s) 643
AsuHPI GGTGA 2 cut(s) 115, 1021
BalI TGGCCA 1 cut(s) 1446
BbsI GAAGAC 2 cut(s) 286, 890
Bbv12I GWGCWC 1 cut(s) 1506
BbvI GCAGC 4 cut(s) 67, 203, 920, 923
BccI CCATC 4 cut(s) 103, 1196, 1362, 1455
BceAI ACGGC 4 cut(s) 545, 654, 1374, 1412
BcgI CGANNNNNNTGC 2 cut(s) 1129, 1163
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 1285
BfaI CTAG 5 cut(s) 462, 632, 1154, 1253, 1310
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 644
BglII AGATCT 2 cut(s) 1092, 1468
BisI GCNGC 5 cut(s) 81, 192, 735, 934, 937
BlsI GCNGC 5 cut(s) 82, 193, 736, 935, 938
Bme1390I CCNGG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 6 cut(s) 92, 461, 539, 765, 1260, 1296
BpiI GAAGAC 2 cut(s) 286, 890
BpuEI CTTGAG 1 cut(s) 493
BsaJI CCNNGG 2 cut(s) 55, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 911
Bse1I ACTGG 1 cut(s) 1122
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 55, 56
BseGI GGATG 5 cut(s) 554, 769, 1118, 1311, 1373
BseLI CCNNNNNNNGG 2 cut(s) 467, 911
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 1 cut(s) 1122
BseXI GCAGC 4 cut(s) 67, 203, 920, 923
BshFI GGCC 4 cut(s) 560, 1152, 1199, 1446
BsiHKAI GWGCWC 1 cut(s) 1506
BslI CCNNNNNNNGG 2 cut(s) 467, 911
BsmAI GTCTC 1 cut(s) 1285
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 4 cut(s) 560, 1152, 1199, 1446
Bsp1286I GDGCHC 1 cut(s) 1506
BspACI CCGC 6 cut(s) 441, 735, 963, 1032, 1178, 1380
BspANI GGCC 4 cut(s) 560, 1152, 1199, 1446
BspCNI CTCAG 1 cut(s) 872
BspHI TCATGA 2 cut(s) 927, 981
BspPI GGATC 4 cut(s) 80, 172, 587, 1006
BspQI GCTCTTC 1 cut(s) 1340
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 1122
BssECI CCNNGG 2 cut(s) 55, 56
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 568, 658, 669
Bst6I CTCTTC 5 cut(s) 12, 393, 762, 1168, 1340
BstDEI CTNAG 4 cut(s) 351, 859, 1274, 1397
BstF5I GGATG 5 cut(s) 554, 769, 1118, 1311, 1373
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 1285
BstMWI GCNNNNNNNGC 3 cut(s) 191, 549, 1184
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 4 cut(s) 67, 203, 920, 923
BstV2I GAAGAC 2 cut(s) 286, 890
BstX2I RGATCY 3 cut(s) 1011, 1092, 1468
BstYI RGATCY 3 cut(s) 1011, 1092, 1468
BsuRI GGCC 4 cut(s) 560, 1152, 1199, 1446
BtsCI GGATG 5 cut(s) 554, 769, 1118, 1311, 1373
CaiI CAGNNNCTG 1 cut(s) 1267
CciI TCATGA 2 cut(s) 927, 981
CfoI GCGC 1 cut(s) 643
CseI GACGC 1 cut(s) 674
Csp6I GTAC 2 cut(s) 435, 1019
CviQI GTAC 2 cut(s) 435, 1019
DdeI CTNAG 4 cut(s) 351, 859, 1274, 1397
DraI TTTAAA 1 cut(s) 447
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 558, 1444
Eam1104I CTCTTC 5 cut(s) 12, 393, 762, 1168, 1340
EarI CTCTTC 5 cut(s) 12, 393, 762, 1168, 1340
Eco57I CTGAAG 1 cut(s) 1216
EcoRI GAATTC 2 cut(s) 627, 1076
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 174
FalI AAGNNNNNCTT 4 cut(s) 980, 1012, 1345, 1377
Fnu4HI GCNGC 5 cut(s) 81, 192, 735, 934, 937
FokI GGATG 5 cut(s) 561, 776, 1105, 1318, 1380
Fsp4HI GCNGC 5 cut(s) 81, 192, 735, 934, 937
FspBI CTAG 5 cut(s) 462, 632, 1154, 1253, 1310
GlaI GCGC 1 cut(s) 642
GluI GCNGC 5 cut(s) 81, 192, 735, 934, 937
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 4 cut(s) 560, 1152, 1199, 1446
HgaI GACGC 1 cut(s) 674
HhaI GCGC 1 cut(s) 643
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HincII GTYRAC 2 cut(s) 330, 1293
HindII GTYRAC 2 cut(s) 330, 1293
HinfI GANTC 7 cut(s) 138, 260, 400, 414, 513, 1146, 1236
HphI GGTGA 2 cut(s) 115, 1021
Hpy166II GTNNAC 2 cut(s) 330, 1293
Hpy188I TCNGA 7 cut(s) 77, 757, 862, 1235, 1269, 1285, 1536
Hpy188III TCNNGA 6 cut(s) 148, 510, 546, 928, 982, 1009
Hpy8I GTNNAC 2 cut(s) 330, 1293
Hpy99I CGWCG 2 cut(s) 640, 1339
HpyAV CCTTC 4 cut(s) 390, 967, 1032, 1431
HpyCH4III ACNGT 3 cut(s) 568, 658, 669
HpyCH4IV ACGT 3 cut(s) 332, 842, 887
HpyCH4V TGCA 4 cut(s) 83, 172, 303, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 549, 1184
HpyF3I CTNAG 4 cut(s) 351, 859, 1274, 1397
HpySE526I ACGT 3 cut(s) 332, 842, 887
HspAI GCGC 1 cut(s) 641
LguI GCTCTTC 1 cut(s) 1340
LmnI GCTCC 2 cut(s) 606, 1336
LpnPI CCDG 8 cut(s) 42, 69, 195, 375, 396, 531, 1086, 1135
Lsp1109I GCAGC 4 cut(s) 67, 203, 920, 923
LweI GCATC 6 cut(s) 92, 461, 539, 765, 1260, 1296
MaeI CTAG 5 cut(s) 462, 632, 1154, 1253, 1310
MaeII ACGT 3 cut(s) 332, 842, 887
MaeIII GTNAC 7 cut(s) 202, 268, 354, 562, 809, 1417, 1429
MfeI CAATTG 2 cut(s) 717, 921
MflI RGATCY 3 cut(s) 1011, 1092, 1468
MhlI GDGCHC 1 cut(s) 1506
MlsI TGGCCA 1 cut(s) 1446
MluCI AATT 8 cut(s) 142, 208, 480, 627, 717, 921, 1076, 1129
MluNI TGGCCA 1 cut(s) 1446
MlyI GAGTC 3 cut(s) 254, 408, 1140
MmeI TCCRAC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 1446
Mph1103I ATGCAT 1 cut(s) 174
MroXI GAANNNNTTC 2 cut(s) 155, 1218
MscI TGGCCA 1 cut(s) 1446
MseI TTAA 5 cut(s) 446, 821, 1518, 1527, 1564
MslI CAYNNNNRTG 1 cut(s) 1049
Msp20I TGGCCA 1 cut(s) 1446
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 2 cut(s) 717, 921
Mva1269I GAATGC 1 cut(s) 981
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 191, 549, 1184
NmeAIII GCCGAG 1 cut(s) 1128
NmuCI GTSAC 4 cut(s) 202, 268, 809, 1429
NsiI ATGCAT 1 cut(s) 174
PagI TCATGA 2 cut(s) 927, 981
PasI CCCWGGG 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 2 cut(s) 682, 1014
PctI GAATGC 1 cut(s) 981
PdmI GAANNNNTTC 2 cut(s) 155, 1218
PfeI GAWTC 4 cut(s) 138, 400, 513, 1236
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 5 cut(s) 82, 193, 736, 935, 938
PleI GAGTC 3 cut(s) 254, 408, 1140
PpsI GAGTC 3 cut(s) 254, 408, 1140
Psp1406I AACGTT 2 cut(s) 842, 887
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 3 cut(s) 1011, 1092, 1468
RsaI GTAC 2 cut(s) 436, 1020
RsaNI GTAC 2 cut(s) 435, 1019
RseI CAYNNNNRTG 1 cut(s) 1049
SapI GCTCTTC 1 cut(s) 1340
SaqAI TTAA 5 cut(s) 446, 821, 1518, 1527, 1564
SatI GCNGC 5 cut(s) 81, 192, 735, 934, 937
SchI GAGTC 3 cut(s) 254, 408, 1140
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 1506
SfaNI GCATC 6 cut(s) 92, 461, 539, 765, 1260, 1296
SfcI CTRYAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 8 cut(s) 142, 208, 480, 627, 717, 921, 1076, 1129
SsiI CCGC 6 cut(s) 441, 735, 963, 1032, 1178, 1380
SspI AATATT 1 cut(s) 155
SspMI CTAG 5 cut(s) 462, 632, 1154, 1253, 1310
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 568, 658, 669
TaiI ACGT 3 cut(s) 335, 845, 890
TaqI TCGA 4 cut(s) 519, 582, 1008, 1337
TasI AATT 8 cut(s) 142, 208, 480, 627, 717, 921, 1076, 1129
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 4 cut(s) 138, 400, 513, 1236
Tru1I TTAA 5 cut(s) 446, 821, 1518, 1527, 1564
Tru9I TTAA 5 cut(s) 446, 821, 1518, 1527, 1564
TseFI GTSAC 4 cut(s) 202, 268, 809, 1429
TseI GCWGC 4 cut(s) 80, 191, 933, 936
Tsp45I GTSAC 4 cut(s) 202, 268, 809, 1429
TspGWI ACGGA 3 cut(s) 610, 690, 1323
Van91I CCANNNNNTGG 1 cut(s) 911
XapI RAATTY 2 cut(s) 627, 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 1454
XmnI GAANNNNTTC 2 cut(s) 155, 1218
XspI CTAG 5 cut(s) 462, 632, 1154, 1253, 1310
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.