RLG00000012830

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007992
Physical Location & Seq
Forward (+)
22809462 .. 22811827
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012830

Sequence Viewer

Length: 1572 bp
ATGAGTATGGAGATAGATACCTACCAGAAAGAAAGTGATGATCAGTATGTTGATTGGAAAGGAAGAAAGGCAAATCCTAAAATCCATGGTGGAATTAGAGCTGCTGCCTTTGCATGTGTTGTTGAGGTCTTTACCAACATGGTTTTCTTATGCAATGCTAGTAACTTTGTCACATACTTCACAAAGTCAATGCATTATCCCCCTGCTAAATCAGCAAATATGGTCACCAATTTCATGGGAACCTCTTTTTTGCTCACCATCTTGGGAGGCTTTATCAGTGACTCACTCTTCACTAGATTCACAACCTTCATCCTTTCCTGCATAATTGAGTTGCTGGGACTAATCTTGCTGACAATCCAATCTCAAAGCAGAAGGTTACGGCCGGCTTTGAATTTAAAGCCTTCGCAGTCTCAAGCAGCAATTCTATACAGCGGCCTTTACGCCATTGCTGCTGGTGCTGCTGGACTCAATGCCAACTTACCTGCACATGGTGCTGATCAACTTGATCACAGCAATCAGAGACAGATCTCTGCCTTCTTCAATTGGTTTTTCTTTTCCTTATGCACTGGTGGACTCATTAGCTCAACTGTCATGGTTTGGGTGGAAGAGAACAAAGGCTGGAATTGGAGCTTTCCCATAACAGTTATAGTTTTGAGTTTGGCGCTTCTTATCTTCTTCAGTGGAAGTCCATTTTATAGGCACAAACGACCCACTGGGAGCTCATTAACAAGGATCATCAAGGTACTTACTTCTGCTGCTCAAAACTGGAAAGCCTCGCCAGACGAGAGATTGGGGAACCGGTATGCAGTAGCTGCACTCAACCTGAACAGAGCGGATGGAGATCACAAATTTAAGTTCCTGGACAAAGCATTAATAGACAACAGAGTCAATGCAGCTGAAATTAAGGAAACAAGAACTTTTCTTGGCCTTTTACCTATATTTGCAAGCACAATCATGATGAACTGTTGCCTAGCTCAACTTCAAACATTCTCCGTGGTACAAGGGAGCATAATGAATAGGAAACTACATAACTTTGAAATTCCGACTCCATCATTAACAGTAATCCCTCTTATCATCATGCTATCCTCCATTCCCTTATACGAACGATTACCTTCTGAAAAAAACTTCATTTTCAAACCACTCTGGAGGATCGGACTGGGGCTAGCACTAGCATCAGGCTCAATGGCCGTAGCTGCTCTCGTCGAAGCTAAGAGGCGTGCAGAGGCTGCTGACAGCAATGTGATATCGGTATTTTGGCTTGGGTGGCAATTCCTGTTGCTAGGAGTGTCTGATATGCTCACTCTTGGAGGAATGCTCGAGTTCTTTTACTCCGAGGCACCCAATAGCATGAGAAGCATGTGCATTGCTTTGTCATGGTGCTCAACATCAATGGGGTACTTCTTGAGCTCAGTGCTGGTGTCTATAGTAAATTCAGTTAGTGGAAAATATGGGAAAGAGTGGCTTGGAGGGATGAATTTGAATCATGGGCGCTTGGATCTGTTTTACACACTTCTTAGCATTCTCAACTCCCTGAATTTTCTCAACTACATGTATTGGGCAAAGAGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

524

Amino Acids

58.3

Weight (kDa)

9.32

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 100 - 482 6.3e-81 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 1336
AccBSI CCGCTC 1 cut(s) 833
AciI CCGC 2 cut(s) 432, 833
AclWI GGATC 3 cut(s) 740, 1157, 1503
AcoI YGGCCR 2 cut(s) 380, 1185
AcsI RAATTY 6 cut(s) 391, 848, 1038, 1429, 1474, 1534
AcuI CTGAAG 1 cut(s) 661
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 3 cut(s) 744, 999, 1397
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 1548
AgeI ACCGGT 1 cut(s) 798
AgsI TTSAA 6 cut(s) 391, 541, 983, 1037, 1135, 1480
AjnI CCWGG 1 cut(s) 858
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
Alw21I GWGCWC 3 cut(s) 722, 1382, 1409
Alw26I GTCTC 2 cut(s) 414, 514
AlwI GGATC 3 cut(s) 740, 1157, 1503
AlwNI CAGNNNCTG 2 cut(s) 812, 1226
Ama87I CYCGRG 1 cut(s) 1316
AoxI GGCC 4 cut(s) 380, 433, 925, 1185
ApoI RAATTY 6 cut(s) 391, 848, 1038, 1429, 1474, 1534
AseI ATTAAT 1 cut(s) 872
AsiGI ACCGGT 1 cut(s) 798
AspLEI GCGC 2 cut(s) 664, 1491
AsuHPI GGTGA 2 cut(s) 217, 247
AsuNHI GCTAGC 1 cut(s) 1162
AvaI CYCGRG 1 cut(s) 1316
BanI GGYRCC 1 cut(s) 1336
BanII GRGCYC 2 cut(s) 722, 1409
Bbv12I GWGCWC 3 cut(s) 722, 1382, 1409
BccI CCATC 3 cut(s) 266, 830, 1057
BceAI ACGGC 2 cut(s) 395, 1172
BciT130I CCWGG 1 cut(s) 860
BclI TGATCA 3 cut(s) 40, 496, 505
BcoDI GTCTC 2 cut(s) 414, 514
BfaI CTAG 6 cut(s) 159, 294, 971, 1163, 1169, 1280
BfmI CTRYAG 1 cut(s) 1422
BfoI RGCGCY 2 cut(s) 665, 1492
BfuAI ACCTGC 1 cut(s) 490
BglII AGATCT 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 860
BmeT110I CYCGRG 1 cut(s) 1316
BmiI GGNNCC 3 cut(s) 241, 797, 1338
BmrFI CCNGG 1 cut(s) 860
BmrI ACTGGG 2 cut(s) 723, 1166
BmsI GCATC 1 cut(s) 1181
BmtI GCTAGC 1 cut(s) 1166
BmuI ACTGGG 2 cut(s) 723, 1166
BplI GAGNNNNNCTC 2 cut(s) 1299, 1331
BpmI CTGGAG 1 cut(s) 1165
BpuEI CTTGAG 2 cut(s) 396, 1423
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 85, 993, 1332
BsaWI WCCGGW 1 cut(s) 798
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 2 cut(s) 382, 798
Bse1I ACTGG 4 cut(s) 571, 718, 770, 1161
Bse3DI GCAATG 4 cut(s) 160, 444, 1243, 1362
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 85, 993, 1332
BseGI GGATG 3 cut(s) 309, 841, 1476
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 4 cut(s) 160, 444, 1243, 1362
BseMII CTCAG 1 cut(s) 1422
BseNI ACTGG 4 cut(s) 571, 718, 770, 1161
BseX3I CGGCCG 1 cut(s) 380
BseYI CCCAGC 1 cut(s) 334
BsgI GTGCAG 3 cut(s) 468, 798, 1239
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 4 cut(s) 382, 435, 927, 1187
BshNI GGYRCC 1 cut(s) 1336
BshTI ACCGGT 1 cut(s) 798
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 3 cut(s) 722, 1382, 1409
BsiHKCI CYCGRG 1 cut(s) 1316
BsiSI CCGG 2 cut(s) 383, 799
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 414, 514
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 2 cut(s) 1317, 1518
BsnI GGCC 4 cut(s) 382, 435, 927, 1187
BsoBI CYCGRG 1 cut(s) 1316
Bsp1286I GDGCHC 3 cut(s) 722, 1382, 1409
Bsp143I GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 2 cut(s) 432, 833
BspANI GGCC 4 cut(s) 382, 435, 927, 1187
BspCNI CTCAG 1 cut(s) 1421
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 3 cut(s) 241, 797, 1338
BspMI ACCTGC 1 cut(s) 490
BspOI GCTAGC 1 cut(s) 1166
BspPI GGATC 3 cut(s) 740, 1157, 1503
BspT107I GGYRCC 1 cut(s) 1336
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 4 cut(s) 160, 444, 1243, 1362
BsrFI RCCGGY 2 cut(s) 382, 798
BsrI ACTGG 4 cut(s) 571, 718, 770, 1161
BssAI RCCGGY 2 cut(s) 382, 798
BssECI CCNNGG 3 cut(s) 85, 993, 1332
BssMI GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 4 cut(s) 589, 643, 965, 1060
Bst6I CTCTTC 2 cut(s) 293, 600
BstAPI GCANNNNNTGC 3 cut(s) 491, 812, 1226
BstC8I GCNNGC 4 cut(s) 384, 946, 1164, 1218
BstDEI CTNAG 3 cut(s) 1209, 1408, 1514
BstDSI CCRYGG 2 cut(s) 85, 993
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 3 cut(s) 309, 841, 1476
BstH2I RGCGCY 2 cut(s) 665, 1492
BstHHI GCGC 2 cut(s) 664, 1491
BstKTI GATC 8 cut(s) 43, 499, 508, 528, 735, 844, 1152, 1498
BstMAI GTCTC 2 cut(s) 414, 514
BstMBI GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
BstMCI CGRYCG 1 cut(s) 383
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 3 cut(s) 117, 1360, 1552
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 1 cut(s) 1422
BstX2I RGATCY 2 cut(s) 525, 1495
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 525, 1495
BstZI CGGCCG 1 cut(s) 380
BsuRI GGCC 4 cut(s) 382, 435, 927, 1187
BtgI CCRYGG 2 cut(s) 85, 993
BtsCI GGATG 3 cut(s) 309, 841, 1476
BtsIMutI CAGTG 5 cut(s) 283, 564, 685, 711, 1416
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 4 cut(s) 384, 946, 1164, 1218
CaiI CAGNNNCTG 2 cut(s) 812, 1226
CciI TCATGA 1 cut(s) 954
CfoI GCGC 2 cut(s) 664, 1491
Cfr10I RCCGGY 2 cut(s) 382, 798
Csp6I GTAC 3 cut(s) 743, 998, 1396
CspAI ACCGGT 1 cut(s) 798
CviQI GTAC 3 cut(s) 743, 998, 1396
DdeI CTNAG 3 cut(s) 1209, 1408, 1514
DpnI GATC 8 cut(s) 42, 498, 507, 527, 734, 843, 1151, 1497
DpnII GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
DraI TTTAAA 1 cut(s) 396
DraIII CACNNNGTG 1 cut(s) 491
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 2 cut(s) 380, 1185
EagI CGGCCG 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 293, 600
EarI CTCTTC 2 cut(s) 293, 600
Ecl136II GAGCTC 2 cut(s) 720, 1407
EclXI CGGCCG 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 722, 1409
Eco32I GATATC 1 cut(s) 1245
Eco52I CGGCCG 1 cut(s) 380
Eco53kI GAGCTC 2 cut(s) 720, 1407
Eco57I CTGAAG 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 1316
Eco91I GGTNACC 1 cut(s) 223
EcoICRI GAGCTC 2 cut(s) 720, 1407
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 722, 1409
ErhI CCWWGG 1 cut(s) 85
FalI AAGNNNNNCTT 2 cut(s) 1446, 1478
FaqI GGGAC 1 cut(s) 351
FbaI TGATCA 3 cut(s) 40, 496, 505
FokI GGATG 3 cut(s) 296, 848, 1483
FriOI GRGCYC 2 cut(s) 722, 1409
FspBI CTAG 6 cut(s) 159, 294, 971, 1163, 1169, 1280
GlaI GCGC 2 cut(s) 663, 1490
GsaI CCCAGC 1 cut(s) 338
GsuI CTGGAG 1 cut(s) 1165
HaeII RGCGCY 2 cut(s) 665, 1492
HaeIII GGCC 4 cut(s) 382, 435, 927, 1187
HapII CCGG 2 cut(s) 383, 799
HhaI GCGC 2 cut(s) 664, 1491
Hin6I GCGC 2 cut(s) 662, 1489
HinP1I GCGC 2 cut(s) 662, 1489
HinfI GANTC 7 cut(s) 281, 297, 465, 573, 885, 1045, 1480
HpaII CCGG 2 cut(s) 383, 799
HphI GGTGA 2 cut(s) 217, 247
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 6 cut(s) 519, 1044, 1117, 1154, 1291, 1333
Hpy188III TCNNGA 3 cut(s) 955, 1144, 1402
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 5 cut(s) 316, 366, 411, 544, 1122
HpyCH4III ACNGT 4 cut(s) 589, 643, 965, 1060
HpyF3I CTNAG 3 cut(s) 1209, 1408, 1514
HspAI GCGC 2 cut(s) 662, 1489
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 3 cut(s) 40, 496, 505
Kzo9I GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
LmnI GCTCC 3 cut(s) 627, 717, 1005
LweI GCATC 1 cut(s) 1181
MaeI CTAG 6 cut(s) 159, 294, 971, 1163, 1169, 1280
MaeIII GTNAC 5 cut(s) 161, 169, 223, 278, 375
MalI GATC 8 cut(s) 42, 498, 507, 527, 734, 843, 1151, 1497
MbiI CCGCTC 1 cut(s) 833
MboI GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
MboII GAAGA 6 cut(s) 75, 280, 529, 617, 664, 667
MfeI CAATTG 1 cut(s) 541
MflI RGATCY 2 cut(s) 525, 1495
MhlI GDGCHC 3 cut(s) 722, 1382, 1409
MlyI GAGTC 5 cut(s) 275, 459, 567, 894, 1039
MmeI TCCRAC 1 cut(s) 1067
Mph1103I ATGCAT 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 6 cut(s) 395, 725, 852, 872, 903, 1055
MslI CAYNNNNRTG 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 432, 896
MspI CCGG 2 cut(s) 383, 799
MspR9I CCNGG 1 cut(s) 860
MunI CAATTG 1 cut(s) 541
Mva1269I GAATGC 2 cut(s) 1317, 1518
MvaI CCWGG 1 cut(s) 860
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 85
NdeII GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
NgoMIV GCCGGC 1 cut(s) 382
NheI GCTAGC 1 cut(s) 1162
NlaIV GGNNCC 3 cut(s) 241, 797, 1338
NmuCI GTSAC 3 cut(s) 169, 223, 278
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 3 cut(s) 117, 1360, 1552
PaeR7I CTCGAG 1 cut(s) 1316
PagI TCATGA 1 cut(s) 954
PciI ACATGT 1 cut(s) 1548
PctI GAATGC 2 cut(s) 1317, 1518
PdiI GCCGGC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 297, 1480
PfoI TCCNGGA 1 cut(s) 858
PinAI ACCGGT 1 cut(s) 798
PleI GAGTC 5 cut(s) 275, 459, 567, 893, 1039
PpsI GAGTC 5 cut(s) 275, 459, 567, 893, 1039
PscI ACATGT 1 cut(s) 1548
PshBI ATTAAT 1 cut(s) 872
Psp124BI GAGCTC 2 cut(s) 722, 1409
Psp6I CCWGG 1 cut(s) 858
PspEI GGTNACC 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 3 cut(s) 241, 797, 1338
PspXI VCTCGAGB 1 cut(s) 1316
PstNI CAGNNNCTG 2 cut(s) 812, 1226
PsuI RGATCY 2 cut(s) 525, 1495
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 744, 999, 1397
RsaNI GTAC 3 cut(s) 743, 998, 1396
RseI CAYNNNNRTG 1 cut(s) 953
SacI GAGCTC 2 cut(s) 722, 1409
SaqAI TTAA 6 cut(s) 395, 725, 852, 872, 903, 1055
Sau3AI GATC 8 cut(s) 40, 496, 505, 525, 732, 841, 1149, 1495
SchI GAGTC 5 cut(s) 275, 459, 567, 894, 1039
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 3 cut(s) 722, 1382, 1409
SfaNI GCATC 1 cut(s) 1181
SfcI CTRYAG 1 cut(s) 1422
Sfr274I CTCGAG 1 cut(s) 1316
SlaI CTCGAG 1 cut(s) 1316
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 3 cut(s) 411, 1316, 1402
SmoI CTYRAG 3 cut(s) 411, 1316, 1402
SsiI CCGC 2 cut(s) 432, 833
SspMI CTAG 6 cut(s) 159, 294, 971, 1163, 1169, 1280
SstI GAGCTC 2 cut(s) 722, 1409
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 4 cut(s) 589, 643, 965, 1060
TaqI TCGA 2 cut(s) 1203, 1317
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 297, 1480
Tru1I TTAA 6 cut(s) 395, 725, 852, 872, 903, 1055
Tru9I TTAA 6 cut(s) 395, 725, 852, 872, 903, 1055
TscAI CASTG 5 cut(s) 283, 571, 685, 718, 1416
TseFI GTSAC 3 cut(s) 169, 223, 278
Tsp45I GTSAC 3 cut(s) 169, 223, 278
TspDTI ATGAA 6 cut(s) 223, 298, 974, 1028, 1117, 1487
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 5 cut(s) 283, 571, 685, 718, 1416
VspI ATTAAT 1 cut(s) 872
XapI RAATTY 6 cut(s) 391, 848, 1038, 1429, 1474, 1534
XceI RCATGY 3 cut(s) 117, 1360, 1552
XhoI CTCGAG 1 cut(s) 1316
XspI CTAG 6 cut(s) 159, 294, 971, 1163, 1169, 1280
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.