FvH4_2g18020

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007992
Physical Location & Seq
Reverse (-)
15433899 .. 15437505
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18020.t2

Sequence Viewer

Length: 1572 bp
ATGAGTATGGAGATAGATATCTACCAGAAAGAAAGTGATGATCAGTATATTGATTGGAAAGGAAGAAACGCAAATCCAAAAATCCATGGTGGAATTAGAGCTGCTGCCTTTGCATGCGTTGTTGAGGTCTTGACAAACATGGTTTTCATATGCAATGCCAGTAACTTTGTCACATACTTCACAAAGTCAATGCATTACCCGCCAGCTAAATCAGCAAATATGGTCACCAATTTCATGGGAACCTCTTTTCTGCTCACCATATTAGGAGGCTTTATCAGTGACTCACTCTTCACTAGATTCACAACCTTCATCCTTTCCTGCATAATCGAGTTGCTGGGACTAATCTTGCTGACAATCCAATCTCATAGCACAAGGTTACGGCCGGCGTTGAATCTACAGCCTTCTCAGTCTCAAGCAGCATTTCTGTACACCGGCATTTACTCCGTTGCTGCTGGTGCTGCTGGAATCAATGCCAACTTACCTGCACATGGTGCTGATCAGCTTGATCACAGCAATCAGAGACAGATATCTGCCTTCTTCAACTGGTTTTTCTTTTCCTTATGCACTGGTGGACTCATTAGCGCAACTGTCATGGTCTGGGTGGAAGAGAACAAAGGCTGGAATTGGAGCTTTCCCATAACAGTTATAGTTTTGTGTTTGGCACTTTTTATTTTCATCAGTGGAAGTCCATTTTATAGGCACAAACGACCCACTGGGAGTGCATTGACAAGGATCATCAAGGTACTTACTTATGCTGCTCGAAACTGGAAAGCCTCACCGAACCAGAGATTGGGAAACCAGTATGCAGTAGCTGCACTCAACCTGAACAGAGCTGATGGAGATCACAAGTTTAAGTTCCTGGACAAAGCATTGATAGACAACAGAGTCACTGCAGCTGAAGTAAAGGAAACAAGAACTTTTATTGGCCTTTTACCTATATTTGCAAGCACAATCATGATGAACTGCTGCCTAGCTCAACTTCAAACATTCTCCGTGGTACAAGGGAGCATAATGAATAGAAAACTACATAACTTTGAAATTCCCACTCCATCATTAAATGTGATCCCTCTCATCATCATGCTATCCTCGATTCCCTTATACGAACGATTATATTCTGGAAAGAACATCATTTTCAAACCGCTCTGGAGGATGGGACTGGGGCTAGCACTAGCATCAGGCTCAATGGCAGTAGCTGCTCTAGTCGAAGCTAAGAGGCGCGCAGAGGCTGCTGACAACAATGTGATGTCTGTGTTTTGGCTCGGGTGGCAATTCTTGTTGCTGGGAGTGTCTGATATGCTCACTCTAGGTGGGATGCTCGAGTTCTTCTACTCCGAGGCACCAAGTAGCATGAGAAGTATGTGCACTGCTTTGTCATGGTGTTCGACATCAATGGGGTACTTCTTGAGCTCATTTCTGGTGTCCATAGTAAATTCAGTTAGTGGAAGCTATGGCAAAGAATGGCTTGGAGGGATGAACATGAATCATGGGCGCTTGGATCTGTTCTACACACTTCTTAGCATTCTCAACTCCCTCAATTTTCTCAACTACATGTATTGGGCCAGGAGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

524

Amino Acids

58.36

Weight (kDa)

9.24

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 100 - 482 3e-81 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 1336
AccB7I CCANNNNNTGG 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 1141
AccII CGCG 1 cut(s) 1218
AciI CCGC 2 cut(s) 200, 1139
AclWI GGATC 3 cut(s) 740, 1057, 1503
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 1038, 1429
AcuI CTGAAG 1 cut(s) 918
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 4 cut(s) 428, 744, 999, 1397
AfiI CCNNNNNNNGG 2 cut(s) 488, 790
AflIII ACRYGT 1 cut(s) 1548
AgsI TTSAA 5 cut(s) 391, 541, 983, 1037, 1135
AjnI CCWGG 2 cut(s) 858, 1559
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
Alw21I GWGCWC 2 cut(s) 1364, 1409
Alw26I GTCTC 2 cut(s) 414, 514
Alw44I GTGCAC 1 cut(s) 1360
AlwI GGATC 3 cut(s) 740, 1057, 1503
AlwNI CAGNNNCTG 3 cut(s) 812, 1193, 1226
Ama87I CYCGRG 2 cut(s) 1259, 1316
AoxI GGCC 3 cut(s) 380, 925, 1557
ApaLI GTGCAC 1 cut(s) 1360
ApoI RAATTY 2 cut(s) 1038, 1429
AspLEI GCGC 4 cut(s) 584, 1218, 1220, 1491
AspS9I GGNCC 1 cut(s) 1557
AsuHPI GGTGA 3 cut(s) 217, 247, 768
AsuNHI GCTAGC 1 cut(s) 1162
AvaI CYCGRG 2 cut(s) 1259, 1316
BaeGI GKGCMC 1 cut(s) 1364
BanI GGYRCC 1 cut(s) 1336
BanII GRGCYC 1 cut(s) 1409
Bbv12I GWGCWC 2 cut(s) 1364, 1409
BccI CCATC 3 cut(s) 830, 1057, 1144
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 860, 1561
BclI TGATCA 3 cut(s) 40, 496, 505
BcoDI GTCTC 2 cut(s) 414, 514
BfaI CTAG 6 cut(s) 294, 971, 1163, 1169, 1199, 1304
BfmI CTRYAG 2 cut(s) 395, 891
BfoI RGCGCY 1 cut(s) 1492
BfuAI ACCTGC 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 860, 1561
BmeT110I CYCGRG 2 cut(s) 1259, 1316
BmgT120I GGNCC 1 cut(s) 1557
BmiI GGNNCC 2 cut(s) 241, 1338
BmrFI CCNGG 2 cut(s) 860, 1561
BmrI ACTGGG 2 cut(s) 723, 1166
BmsI GCATC 2 cut(s) 1181, 1302
BmtI GCTAGC 1 cut(s) 1166
BmuI ACTGGG 2 cut(s) 723, 1166
BpmI CTGGAG 1 cut(s) 1165
BpuEI CTTGAG 2 cut(s) 396, 1423
BsaBI GATNNNNATC 2 cut(s) 17, 840
BsaJI CCNNGG 3 cut(s) 85, 993, 1332
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 790
Bse118I RCCGGY 2 cut(s) 382, 431
Bse1I ACTGG 7 cut(s) 159, 548, 571, 718, 770, 799, 1161
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 2 cut(s) 17, 840
BseBI CCWGG 2 cut(s) 860, 1561
BseDI CCNNGG 3 cut(s) 85, 993, 1332
BseGI GGATG 4 cut(s) 309, 1155, 1317, 1476
BseJI GATNNNNATC 2 cut(s) 17, 840
BseLI CCNNNNNNNGG 2 cut(s) 488, 790
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 7 cut(s) 159, 548, 571, 718, 770, 799, 1161
BsePI GCGCGC 1 cut(s) 1216
BseSI GKGCMC 1 cut(s) 1364
BseX3I CGGCCG 1 cut(s) 380
BseYI CCCAGC 2 cut(s) 334, 1279
BsgI GTGCAG 2 cut(s) 468, 798
Bsh1236I CGCG 1 cut(s) 1218
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 382, 927, 1559
BshNI GGYRCC 1 cut(s) 1336
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 1364, 1409
BsiHKCI CYCGRG 2 cut(s) 1259, 1316
BsiSI CCGG 2 cut(s) 383, 432
BslFI GGGAC 2 cut(s) 351, 1167
BslI CCNNNNNNNGG 2 cut(s) 488, 790
BsmAI GTCTC 2 cut(s) 414, 514
BsmFI GGGAC 2 cut(s) 351, 1167
BsmI GAATGC 1 cut(s) 1518
BsnI GGCC 3 cut(s) 382, 927, 1559
BsoBI CYCGRG 2 cut(s) 1259, 1316
Bsp1286I GDGCHC 2 cut(s) 1364, 1409
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 2 cut(s) 200, 1139
BspANI GGCC 3 cut(s) 382, 927, 1559
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 1218
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 2 cut(s) 241, 1338
BspMAI CTGCAG 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 490
BspOI GCTAGC 1 cut(s) 1166
BspPI GGATC 3 cut(s) 740, 1057, 1503
BspT107I GGYRCC 1 cut(s) 1336
BsrBI CCGCTC 1 cut(s) 1141
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 382, 431
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 7 cut(s) 159, 548, 571, 718, 770, 799, 1161
BssAI RCCGGY 2 cut(s) 382, 431
BssECI CCNNGG 3 cut(s) 85, 993, 1332
BssHII GCGCGC 1 cut(s) 1216
BssMI GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 860, 1561
Bst4CI ACNGT 2 cut(s) 589, 643
Bst6I CTCTTC 2 cut(s) 293, 600
BstAPI GCANNNNNTGC 4 cut(s) 491, 812, 1193, 1226
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 6 cut(s) 115, 204, 384, 946, 1164, 1218
BstDEI CTNAG 3 cut(s) 405, 1209, 1514
BstDSI CCRYGG 2 cut(s) 85, 993
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 4 cut(s) 309, 1155, 1317, 1476
BstFNI CGCG 1 cut(s) 1218
BstH2I RGCGCY 1 cut(s) 1492
BstHHI GCGC 4 cut(s) 584, 1218, 1220, 1491
BstKTI GATC 7 cut(s) 43, 499, 508, 735, 844, 1065, 1498
BstMAI GTCTC 2 cut(s) 414, 514
BstMBI GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
BstMCI CGRYCG 1 cut(s) 383
BstNI CCWGG 2 cut(s) 860, 1561
BstNSI RCATGY 2 cut(s) 117, 1552
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 858, 1559
BstSFI CTRYAG 2 cut(s) 395, 891
BstSLI GKGCMC 1 cut(s) 1364
BstUI CGCG 1 cut(s) 1218
BstX2I RGATCY 1 cut(s) 1495
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 1495
BstZI CGGCCG 1 cut(s) 380
BsuRI GGCC 3 cut(s) 382, 927, 1559
BtgI CCRYGG 2 cut(s) 85, 993
BtsCI GGATG 4 cut(s) 309, 1155, 1317, 1476
BtsI GCAGTG 2 cut(s) 888, 1362
BtsIMutI CAGTG 6 cut(s) 283, 564, 685, 711, 888, 1362
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 6 cut(s) 115, 204, 384, 946, 1164, 1218
CaiI CAGNNNCTG 3 cut(s) 812, 1193, 1226
CciI TCATGA 1 cut(s) 954
CfoI GCGC 4 cut(s) 584, 1218, 1220, 1491
Cfr10I RCCGGY 2 cut(s) 382, 431
Cfr13I GGNCC 1 cut(s) 1557
Csp6I GTAC 4 cut(s) 427, 743, 998, 1396
CviQI GTAC 4 cut(s) 427, 743, 998, 1396
DdeI CTNAG 3 cut(s) 405, 1209, 1514
DpnI GATC 7 cut(s) 42, 498, 507, 734, 843, 1064, 1497
DpnII GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
DraIII CACNNNGTG 1 cut(s) 491
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 380
EagI CGGCCG 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 293, 600
EarI CTCTTC 2 cut(s) 293, 600
Ecl136II GAGCTC 1 cut(s) 1407
EclXI CGGCCG 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 1409
Eco32I GATATC 2 cut(s) 19, 528
Eco52I CGGCCG 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 1407
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 2 cut(s) 1259, 1316
Eco91I GGTNACC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 1407
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 858, 1559
EcoRV GATATC 2 cut(s) 19, 528
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 1409
ErhI CCWWGG 1 cut(s) 85
FalI AAGNNNNNCTT 2 cut(s) 1446, 1478
FaqI GGGAC 2 cut(s) 351, 1167
FauI CCCGC 1 cut(s) 207
FauNDI CATATG 1 cut(s) 149
FbaI TGATCA 3 cut(s) 40, 496, 505
FokI GGATG 4 cut(s) 296, 1162, 1324, 1483
FriOI GRGCYC 1 cut(s) 1409
FspBI CTAG 6 cut(s) 294, 971, 1163, 1169, 1199, 1304
GlaI GCGC 4 cut(s) 583, 1217, 1219, 1490
GsaI CCCAGC 2 cut(s) 338, 1283
GsuI CTGGAG 1 cut(s) 1165
HaeII RGCGCY 1 cut(s) 1492
HaeIII GGCC 3 cut(s) 382, 927, 1559
HapII CCGG 2 cut(s) 383, 432
HhaI GCGC 4 cut(s) 584, 1218, 1220, 1491
Hin6I GCGC 4 cut(s) 582, 1216, 1218, 1489
HinP1I GCGC 4 cut(s) 582, 1216, 1218, 1489
HinfI GANTC 8 cut(s) 281, 297, 391, 465, 573, 885, 1090, 1480
HpaII CCGG 2 cut(s) 383, 432
HphI GGTGA 3 cut(s) 217, 247, 768
Hpy166II GTNNAC 3 cut(s) 429, 572, 1362
Hpy188I TCNGA 3 cut(s) 519, 1291, 1333
Hpy188III TCNNGA 5 cut(s) 130, 955, 1116, 1144, 1402
Hpy8I GTNNAC 3 cut(s) 429, 572, 1362
HpyAV CCTTC 3 cut(s) 316, 411, 544
HpyCH4III ACNGT 2 cut(s) 589, 643
HpyF3I CTNAG 3 cut(s) 405, 1209, 1514
HspAI GCGC 4 cut(s) 582, 1216, 1218, 1489
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 3 cut(s) 40, 496, 505
Kzo9I GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
LmnI GCTCC 2 cut(s) 627, 1005
LweI GCATC 2 cut(s) 1181, 1302
MaeI CTAG 6 cut(s) 294, 971, 1163, 1169, 1199, 1304
MaeIII GTNAC 6 cut(s) 161, 169, 223, 278, 375, 886
MalI GATC 7 cut(s) 42, 498, 507, 734, 843, 1064, 1497
MbiI CCGCTC 1 cut(s) 1141
MboI GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
MboII GAAGA 5 cut(s) 75, 280, 529, 617, 1315
MflI RGATCY 1 cut(s) 1495
MhlI GDGCHC 2 cut(s) 1364, 1409
MluCI AATT 7 cut(s) 93, 229, 622, 1038, 1268, 1429, 1534
MlyI GAGTC 3 cut(s) 275, 567, 894
Mph1103I ATGCAT 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 2 cut(s) 852, 1055
MslI CAYNNNNRTG 2 cut(s) 953, 1076
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 2 cut(s) 383, 432
MspR9I CCNGG 2 cut(s) 860, 1561
Mva1269I GAATGC 1 cut(s) 1518
MvaI CCWGG 2 cut(s) 860, 1561
MvnI CGCG 1 cut(s) 1218
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 149
NdeII GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
NgoMIV GCCGGC 1 cut(s) 382
NheI GCTAGC 1 cut(s) 1162
NlaIV GGNNCC 2 cut(s) 241, 1338
NmuCI GTSAC 4 cut(s) 169, 223, 278, 886
NsiI ATGCAT 1 cut(s) 195
NspI RCATGY 2 cut(s) 117, 1552
PaeI GCATGC 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 1316
PagI TCATGA 1 cut(s) 954
PauI GCGCGC 1 cut(s) 1216
PciI ACATGT 1 cut(s) 1548
PctI GAATGC 1 cut(s) 1518
PdiI GCCGGC 1 cut(s) 384
PfeI GAWTC 5 cut(s) 297, 391, 465, 1090, 1480
PflMI CCANNNNNTGG 1 cut(s) 790
PfoI TCCNGGA 1 cut(s) 858
PleI GAGTC 3 cut(s) 275, 567, 893
PpsI GAGTC 3 cut(s) 275, 567, 893
PscI ACATGT 1 cut(s) 1548
Psp124BI GAGCTC 1 cut(s) 1409
Psp6I CCWGG 2 cut(s) 858, 1559
PspEI GGTNACC 1 cut(s) 223
PspFI CCCAGC 2 cut(s) 334, 1279
PspGI CCWGG 2 cut(s) 858, 1559
PspN4I GGNNCC 2 cut(s) 241, 1338
PspPI GGNCC 1 cut(s) 1557
PspXI VCTCGAGB 1 cut(s) 1316
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 3 cut(s) 812, 1193, 1226
PsuI RGATCY 1 cut(s) 1495
PteI GCGCGC 1 cut(s) 1216
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 428, 744, 999, 1397
RsaNI GTAC 4 cut(s) 427, 743, 998, 1396
RseI CAYNNNNRTG 2 cut(s) 953, 1076
SacI GAGCTC 1 cut(s) 1409
SaqAI TTAA 2 cut(s) 852, 1055
Sau3AI GATC 7 cut(s) 40, 496, 505, 732, 841, 1062, 1495
Sau96I GGNCC 1 cut(s) 1557
SchI GAGTC 3 cut(s) 275, 567, 894
ScrFI CCNGG 2 cut(s) 860, 1561
SduI GDGCHC 2 cut(s) 1364, 1409
SfaNI GCATC 2 cut(s) 1181, 1302
SfcI CTRYAG 2 cut(s) 395, 891
Sfr274I CTCGAG 1 cut(s) 1316
SlaI CTCGAG 1 cut(s) 1316
SmiMI CAYNNNNRTG 2 cut(s) 953, 1076
SmlI CTYRAG 3 cut(s) 411, 1316, 1402
SmoI CTYRAG 3 cut(s) 411, 1316, 1402
SphI GCATGC 1 cut(s) 117
Sse9I AATT 7 cut(s) 93, 229, 622, 1038, 1268, 1429, 1534
SsiI CCGC 2 cut(s) 200, 1139
SspMI CTAG 6 cut(s) 294, 971, 1163, 1169, 1199, 1304
SstI GAGCTC 1 cut(s) 1409
StyD4I CCNGG 2 cut(s) 858, 1559
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 589, 643
TaqI TCGA 6 cut(s) 327, 760, 1088, 1203, 1317, 1382
TasI AATT 7 cut(s) 93, 229, 622, 1038, 1268, 1429, 1534
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 5 cut(s) 297, 391, 465, 1090, 1480
Tru1I TTAA 2 cut(s) 852, 1055
Tru9I TTAA 2 cut(s) 852, 1055
TscAI CASTG 6 cut(s) 283, 571, 685, 718, 895, 1369
TseFI GTSAC 4 cut(s) 169, 223, 278, 886
Tsp45I GTSAC 4 cut(s) 169, 223, 278, 886
TspDTI ATGAA 8 cut(s) 136, 223, 298, 664, 974, 1028, 1487, 1493
TspGWI ACGGA 2 cut(s) 433, 982
TspRI CASTG 6 cut(s) 283, 571, 685, 718, 895, 1369
Van91I CCANNNNNTGG 1 cut(s) 790
VneI GTGCAC 1 cut(s) 1360
XapI RAATTY 2 cut(s) 1038, 1429
XceI RCATGY 2 cut(s) 117, 1552
XhoI CTCGAG 1 cut(s) 1316
XspI CTAG 6 cut(s) 294, 971, 1163, 1169, 1199, 1304
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.