Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003166.1

Orthogroup ID

OG0007992

Physical Location & Seq

Genomic Coordinates Reverse (-)

45042 .. 47415

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003166.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atggagatagatacctaccagaaagaaagtgatgatcagtatgttgattggaaaggaagaaaggcaaatcctaatatcaatggtggaattagagctgctgcctttgcatgtgttgttgaggtctttaccaacatggttttcttatgcaatgccagtaactttgtcacatacttcacaaagtcaatgcattatccacctgctaaatcagcaaatatggtcaccaatttcatgggaacctcttttttgctcaccatcatgggaggctttatcagtgactcactcttcactagattcacaaccttcattctttcctgcataattgagttgctgggactaatcttgctgacaatccaatctcaaagcagaaggttacggccggcattgaatttaaagccttctcagtctcaagcagcaattctgtacactggcctttacgccattgctgctggtgctgctggactcaatgccaacttacctgcacatggtgctgatcagcttgatcacagcaatcagagacagatctctgccttcttcaattggttcctggacaaagcattaatagacaacagagtcaatgcagctgaaattaaggaaacaagaacttttcttggccttttacctatatttgcaagcacaatcatgatgaactgttgcctagctcaacttcaaacattctccgtggtacaagggagcataatgaataggaaactacataactttgaaattccgactccatcattaacagtaatccctcttatcatcatgctatcctccattcccttatacgaacgattacattctggaaataacatcatcttcaaaccaccctggaggatcggactggggctagcactagcatcaggctcaatggccgtagctgctctcgtcgaagctaagaggcgtgcagaggctgctgacagcaatgtgatatcggtattttggctcgggtggcaattcctgttgctaggagtgtctgatatgctcactcttggaggaatgctcgagttcttttactccgaggcacctaatagcatgagaagcatgtgcattgctttgtcatggtgctcaacatcaatggggtacttcttgagctcagtgctggtgtccatagtaaattcagttagtggaaaatatgggaaagagtggcttggagggatgaatttgaatcatgggcgcttggatctgttttacacacttcttagcattctcaactccctgaattttctcaactacatgtattgggcaaaaaggtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

418

Amino Acids

46.43

Weight (kDa)

8.88

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25260 AT3G25280
fragaria_vesca	FvH4_2g18020 FvH4_2g18020
malus_domestica	MD05G1164400.v1.1 MD05G1164600.v1.1 MD10G1153900.v1.1 MD10G1154000.v1.1
prunus_persica	Prupe.8G192800_v2.0.a1 Prupe.8G192800_v2.0.a1 Prupe.8G192800_v2.0.a1
pyrus_communis	pycom10g13300
rosa_chinensis	RchiOBHm_Chr6g0283391
rosa_laevigata	RLG00000012830
rosa_multiflora	Rmu_sc0003166.1_g000011 Rmu_sc0023711.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185560
rosa_rugosa	Rorug06G0153600 Rorug06G0153600
rosa_samantha	Rh6AG266100 Rh6BG268700 Rh6CG268400 Rh6DG261900
rosa_wichuraiana	Rw6G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
AasI	GACNNNNNNGTC	1 cut(s)	569
Acc36I	ACCTGC	2 cut(s)	205, 484
AccB1I	GGYRCC	1 cut(s)	1021
AclWI	GGATC	2 cut(s)	842, 1188
AcoI	YGGCCR	2 cut(s)	374, 870
AcsI	RAATTY	5 cut(s)	385, 723, 1114, 1159, 1219
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	3 cut(s)	422, 684, 1082
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	1233
AgsI	TTSAA	6 cut(s)	385, 535, 668, 722, 820, 1165
AjnI	CCWGG	2 cut(s)	543, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	7 cut(s)	95, 496, 581, 659, 878, 893, 1092
AluI	AGCT	7 cut(s)	95, 496, 581, 659, 878, 893, 1092
Alw21I	GWGCWC	2 cut(s)	1067, 1094
Alw26I	GTCTC	2 cut(s)	408, 508
AlwI	GGATC	2 cut(s)	842, 1188
AlwNI	CAGNNNCTG	1 cut(s)	911
Ama87I	CYCGRG	2 cut(s)	944, 1001
AoxI	GGCC	4 cut(s)	374, 427, 610, 870
ApeKI	GCWGC	8 cut(s)	95, 98, 410, 443, 452, 578, 878, 911
ApoI	RAATTY	5 cut(s)	385, 723, 1114, 1159, 1219
AseI	ATTAAT	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	1176
AsuHPI	GGTGA	2 cut(s)	211, 241
AsuNHI	GCTAGC	1 cut(s)	847
AvaI	CYCGRG	2 cut(s)	944, 1001
BanI	GGYRCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	1094
Bbv12I	GWGCWC	2 cut(s)	1067, 1094
BbvI	GCAGC	8 cut(s)	82, 85, 422, 430, 439, 590, 865, 898
BccI	CCATC	2 cut(s)	260, 742
BceAI	ACGGC	2 cut(s)	389, 857
BciT130I	CCWGG	2 cut(s)	545, 829
BclI	TGATCA	3 cut(s)	34, 490, 499
BcoDI	GTCTC	2 cut(s)	408, 508
BfaI	CTAG	5 cut(s)	288, 656, 848, 854, 965
BfoI	RGCGCY	1 cut(s)	1177
BfuAI	ACCTGC	2 cut(s)	205, 484
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	8 cut(s)	96, 99, 411, 444, 453, 579, 879, 912
BlsI	GCNGC	8 cut(s)	97, 100, 412, 445, 454, 580, 880, 913
Bme1390I	CCNGG	2 cut(s)	545, 829
BmeT110I	CYCGRG	2 cut(s)	944, 1001
BmiI	GGNNCC	3 cut(s)	235, 542, 1023
BmrFI	CCNGG	2 cut(s)	545, 829
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	1 cut(s)	866
BmtI	GCTAGC	1 cut(s)	851
BmuI	ACTGGG	1 cut(s)	851
BplI	GAGNNNNNCTC	2 cut(s)	984, 1016
BpmI	CTGGAG	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	390, 1108
BsaJI	CCNNGG	3 cut(s)	678, 827, 1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	3 cut(s)	153, 430, 846
Bse3DI	GCAATG	4 cut(s)	154, 438, 928, 1047
BseBI	CCWGG	2 cut(s)	545, 829
BseDI	CCNNGG	3 cut(s)	678, 827, 1017
BseGI	GGATG	1 cut(s)	1161
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	4 cut(s)	154, 438, 928, 1047
BseMII	CTCAG	2 cut(s)	413, 1107
BseNI	ACTGG	3 cut(s)	153, 430, 846
BseX3I	CGGCCG	1 cut(s)	374
BseXI	GCAGC	8 cut(s)	82, 85, 422, 430, 439, 590, 865, 898
BseYI	CCCAGC	1 cut(s)	328
BsgI	GTGCAG	2 cut(s)	462, 924
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	4 cut(s)	376, 429, 612, 872
BshNI	GGYRCC	1 cut(s)	1021
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	1067, 1094
BsiHKCI	CYCGRG	2 cut(s)	944, 1001
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	408, 508
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	2 cut(s)	1002, 1203
BsnI	GGCC	4 cut(s)	376, 429, 612, 872
BsoBI	CYCGRG	2 cut(s)	944, 1001
Bsp1286I	GDGCHC	2 cut(s)	1067, 1094
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
BspANI	GGCC	4 cut(s)	376, 429, 612, 872
BspCNI	CTCAG	2 cut(s)	412, 1106
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	235, 542, 1023
BspMI	ACCTGC	2 cut(s)	205, 484
BspOI	GCTAGC	1 cut(s)	851
BspPI	GGATC	2 cut(s)	842, 1188
BspT107I	GGYRCC	1 cut(s)	1021
BsrDI	GCAATG	4 cut(s)	154, 438, 928, 1047
BsrFI	RCCGGY	1 cut(s)	376
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	153, 430, 846
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	678, 827, 1017
BssMI	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
Bst2UI	CCWGG	2 cut(s)	545, 829
Bst4CI	ACNGT	2 cut(s)	650, 745
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	2 cut(s)	485, 911
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	378, 631, 849, 903
BstDEI	CTNAG	4 cut(s)	399, 894, 1093, 1199
BstDSI	CCRYGG	1 cut(s)	678
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	1161
BstH2I	RGCGCY	1 cut(s)	1177
BstHHI	GCGC	1 cut(s)	1176
BstKTI	GATC	6 cut(s)	37, 493, 502, 522, 837, 1183
BstMAI	GTCTC	2 cut(s)	408, 508
BstMBI	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
BstMCI	CGRYCG	1 cut(s)	377
BstNI	CCWGG	2 cut(s)	545, 829
BstNSI	RCATGY	3 cut(s)	111, 1045, 1237
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	543, 827
BstV1I	GCAGC	8 cut(s)	82, 85, 422, 430, 439, 590, 865, 898
BstX2I	RGATCY	2 cut(s)	519, 1180
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	2 cut(s)	519, 1180
BstZI	CGGCCG	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	376, 429, 612, 872
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	1161
BtsIMutI	CAGTG	3 cut(s)	277, 423, 1101
BveI	ACCTGC	2 cut(s)	205, 484
Cac8I	GCNNGC	4 cut(s)	378, 631, 849, 903
CaiI	CAGNNNCTG	1 cut(s)	911
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	1 cut(s)	1176
Cfr10I	RCCGGY	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	421, 683, 1081
CviQI	GTAC	3 cut(s)	421, 683, 1081
DdeI	CTNAG	4 cut(s)	399, 894, 1093, 1199
DpnI	GATC	6 cut(s)	36, 492, 501, 521, 836, 1182
DpnII	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
DraI	TTTAAA	1 cut(s)	390
DraIII	CACNNNGTG	1 cut(s)	485
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	2 cut(s)	374, 870
EagI	CGGCCG	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	1092
EclXI	CGGCCG	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	1094
Eco32I	GATATC	1 cut(s)	930
Eco52I	CGGCCG	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	1092
Eco88I	CYCGRG	2 cut(s)	944, 1001
Eco91I	GGTNACC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	1092
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	543, 827
EcoRV	GATATC	1 cut(s)	930
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	1094
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	345
FbaI	TGATCA	3 cut(s)	34, 490, 499
Fnu4HI	GCNGC	8 cut(s)	96, 99, 411, 444, 453, 579, 879, 912
FokI	GGATG	1 cut(s)	1168
FriOI	GRGCYC	1 cut(s)	1094
Fsp4HI	GCNGC	8 cut(s)	96, 99, 411, 444, 453, 579, 879, 912
FspBI	CTAG	5 cut(s)	288, 656, 848, 854, 965
GlaI	GCGC	1 cut(s)	1175
GluI	GCNGC	8 cut(s)	96, 99, 411, 444, 453, 579, 879, 912
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	850
HaeII	RGCGCY	1 cut(s)	1177
HaeIII	GGCC	4 cut(s)	376, 429, 612, 872
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	1176
Hin6I	GCGC	1 cut(s)	1174
HinP1I	GCGC	1 cut(s)	1174
HinfI	GANTC	6 cut(s)	275, 291, 459, 570, 730, 1165
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	211, 241
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	5 cut(s)	513, 729, 839, 976, 1018
Hpy188III	TCNNGA	3 cut(s)	640, 801, 1087
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	4 cut(s)	310, 360, 405, 538
HpyCH4III	ACNGT	2 cut(s)	650, 745
HpyCH4V	TGCA	9 cut(s)	107, 147, 187, 315, 479, 578, 629, 905, 1047
HpyF3I	CTNAG	4 cut(s)	399, 894, 1093, 1199
HspAI	GCGC	1 cut(s)	1174
KroI	GCCGGC	1 cut(s)	376
KroNI	GCCGGC	1 cut(s)	378
Ksp22I	TGATCA	3 cut(s)	34, 490, 499
Kzo9I	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	8 cut(s)	82, 85, 422, 430, 439, 590, 865, 898
LweI	GCATC	1 cut(s)	866
MaeI	CTAG	5 cut(s)	288, 656, 848, 854, 965
MaeIII	GTNAC	5 cut(s)	155, 163, 217, 272, 369
MalI	GATC	6 cut(s)	36, 492, 501, 521, 836, 1182
MboI	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
MboII	GAAGA	4 cut(s)	69, 274, 523, 808
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	2 cut(s)	519, 1180
MhlI	GDGCHC	2 cut(s)	1067, 1094
MlyI	GAGTC	4 cut(s)	269, 453, 579, 724
MmeI	TCCRAC	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	189
MroNI	GCCGGC	1 cut(s)	376
MseI	TTAA	4 cut(s)	389, 557, 588, 740
MslI	CAYNNNNRTG	2 cut(s)	254, 638
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	545, 829
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	2 cut(s)	1002, 1203
MvaI	CCWGG	2 cut(s)	545, 829
NaeI	GCCGGC	1 cut(s)	378
NdeII	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
NgoMIV	GCCGGC	1 cut(s)	376
NheI	GCTAGC	1 cut(s)	847
NlaIV	GGNNCC	3 cut(s)	235, 542, 1023
NmuCI	GTSAC	3 cut(s)	163, 217, 272
NsiI	ATGCAT	1 cut(s)	189
NspI	RCATGY	3 cut(s)	111, 1045, 1237
PaeR7I	CTCGAG	1 cut(s)	1001
PagI	TCATGA	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	1233
PctI	GAATGC	2 cut(s)	1002, 1203
PdiI	GCCGGC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	291, 1165
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	8 cut(s)	97, 100, 412, 445, 454, 580, 880, 913
PleI	GAGTC	4 cut(s)	269, 453, 578, 724
PpsI	GAGTC	4 cut(s)	269, 453, 578, 724
PscI	ACATGT	1 cut(s)	1233
PshBI	ATTAAT	1 cut(s)	557
Psp124BI	GAGCTC	1 cut(s)	1094
Psp6I	CCWGG	2 cut(s)	543, 827
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	543, 827
PspN4I	GGNNCC	3 cut(s)	235, 542, 1023
PspXI	VCTCGAGB	1 cut(s)	1001
PstNI	CAGNNNCTG	1 cut(s)	911
PsuI	RGATCY	2 cut(s)	519, 1180
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	422, 684, 1082
RsaNI	GTAC	3 cut(s)	421, 683, 1081
RseI	CAYNNNNRTG	2 cut(s)	254, 638
SacI	GAGCTC	1 cut(s)	1094
SaqAI	TTAA	4 cut(s)	389, 557, 588, 740
SatI	GCNGC	8 cut(s)	96, 99, 411, 444, 453, 579, 879, 912
Sau3AI	GATC	6 cut(s)	34, 490, 499, 519, 834, 1180
SchI	GAGTC	4 cut(s)	269, 453, 579, 724
ScrFI	CCNGG	2 cut(s)	545, 829
SduI	GDGCHC	2 cut(s)	1067, 1094
SfaNI	GCATC	1 cut(s)	866
Sfr274I	CTCGAG	1 cut(s)	1001
SlaI	CTCGAG	1 cut(s)	1001
SmiMI	CAYNNNNRTG	2 cut(s)	254, 638
SmlI	CTYRAG	3 cut(s)	405, 1001, 1087
SmoI	CTYRAG	3 cut(s)	405, 1001, 1087
SspMI	CTAG	5 cut(s)	288, 656, 848, 854, 965
SstI	GAGCTC	1 cut(s)	1094
StyD4I	CCNGG	2 cut(s)	543, 827
TaaI	ACNGT	2 cut(s)	650, 745
TaqI	TCGA	2 cut(s)	888, 1002
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	291, 1165
Tru1I	TTAA	4 cut(s)	389, 557, 588, 740
Tru9I	TTAA	4 cut(s)	389, 557, 588, 740
TscAI	CASTG	3 cut(s)	277, 430, 1101
TseFI	GTSAC	3 cut(s)	163, 217, 272
TseI	GCWGC	8 cut(s)	95, 98, 410, 443, 452, 578, 878, 911
Tsp45I	GTSAC	3 cut(s)	163, 217, 272
TspDTI	ATGAA	5 cut(s)	217, 292, 659, 713, 1172
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	3 cut(s)	277, 430, 1101
VspI	ATTAAT	1 cut(s)	557
XapI	RAATTY	5 cut(s)	385, 723, 1114, 1159, 1219
XceI	RCATGY	3 cut(s)	111, 1045, 1237
XhoI	CTCGAG	1 cut(s)	1001
XspI	CTAG	5 cut(s)	288, 656, 848, 854, 965
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.