AT3G26350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009904
Physical Location & Seq
Reverse (-)
9653660 .. 9655495
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26350.1

Sequence Viewer

Length: 1071 bp
ATGTCTCATCATCATCACCATGAAACTAACCCTCATTTTGCGCGAATTCCATCGCAGAATCCACATCTCAAAAGCGGTGGTGCTTCTACCTCACAAACATCTTCGAACCAACCACACATCCCGCCCATTCCGCACCCAAAAAAATCGCACCACAAAACCACGCAACCTCACCCAGTAGCTCCACCAGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAATCCAATCCAAGAACCGAAACATTCTGTAATACCTGTACCATTAAGCCCAGAGGAGAGACTTCCACCACGAAAAACTCAAAACTCATCGAAAAGACCATTGCTATTAAGCCCTGAAGATAATCAACAACAACGACCTCCACCACCACAAGCACCACAACGCAACGGAGGGGGTTATGGATCAACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACACCATCCCCGCATCACCGCCGTGGCCCACGGTTACCACCACCCTCAAGAGAGACAAACGCAATGACATGGTCAGCTGCATTTTGCTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATCATCCTAATCGTTTACCTCGTCTACCGTCCTCGCTCACCTTACGTCGACATCTCAGCTGCTAACCTAAACGCTGCTTATCTCGACATGGGTTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAACGTCACAAACCCAAGCAAGAAAAGTAGTGTGGAGTTTAGCTATGTGACATTCGAGCTTTACTATTACAACACACTCATAGCAACTCAATACATTGAACCTTTCAAGGTTCCTAAGAAAACGTCAATGTTTGCGAATGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGGCAACGCAGAGCCGGGAGCTGCAGCGTCAGATTGAAACAGGTCCGGTTTTGTTGAACCTGAGAGGAATGTTTCATGCACGTTCGCATATAGGACCATTGTTTAGGTACTCTTATAAGTTGCATACTCATTGCAGCGTTTCATTGAATGGTCCTCCTTTAGGAGCTATGCGAGCTAGAAGATGCAATACCAAACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

356

Amino Acids

39.91

Weight (kDa)

10.37

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AccBSI CCGCTC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 600, 624
AccII CGCG 1 cut(s) 43
AciI CCGC 7 cut(s) 75, 122, 131, 444, 461, 469, 570
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 357, 854
AfaI GTAC 2 cut(s) 261, 980
AfiI CCNNNNNNNGG 2 cut(s) 871, 1031
AgsI TTSAA 5 cut(s) 800, 808, 908, 928, 1018
AhdI GACNNNNNGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 9 cut(s) 179, 527, 635, 744, 760, 868, 892, 1037, 1046
AluI AGCT 9 cut(s) 179, 527, 635, 744, 760, 868, 892, 1037, 1046
Alw26I GTCTC 3 cut(s) 9, 274, 497
AlwI GGATC 1 cut(s) 409
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 6 cut(s) 527, 635, 650, 892, 895, 1005
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 5 cut(s) 476, 862, 914, 965, 1022
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 5 cut(s) 8, 161, 458, 606, 695
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 4 cut(s) 862, 914, 965, 1022
BarI GAAGNNNNNNTAC 1 cut(s) 1042
BauI CACGAG 1 cut(s) 204
BbvI GCAGC 6 cut(s) 514, 622, 637, 879, 907, 1017
BccI CCATC 2 cut(s) 58, 463
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 3 cut(s) 9, 274, 497
BfaI CTAG 2 cut(s) 1047, 1069
BfmI CTRYAG 1 cut(s) 893
BisI GCNGC 6 cut(s) 528, 636, 651, 893, 896, 1006
BlsI GCNGC 6 cut(s) 529, 637, 652, 894, 897, 1007
Bme1390I CCNGG 2 cut(s) 186, 887
Bme18I GGWCC 4 cut(s) 862, 914, 965, 1022
BmeRI GACNNNNNGTC 1 cut(s) 207
BmgT120I GGNCC 5 cut(s) 476, 862, 914, 965, 1022
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 2 cut(s) 186, 887
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 472, 1043
BmuI ACTGGG 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 434, 472, 479
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 871, 1031
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 3 cut(s) 320, 519, 1000
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 434, 472, 479
BseGI GGATG 3 cut(s) 117, 455, 579
BseLI CCNNNNNNNGG 2 cut(s) 871, 1031
BseMI GCAATG 3 cut(s) 320, 519, 1000
BseMII CTCAG 2 cut(s) 645, 923
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 6 cut(s) 514, 622, 637, 879, 907, 1017
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 477
BsiSI CCGG 2 cut(s) 886, 917
BslI CCNNNNNNNGG 2 cut(s) 871, 1031
BsmAI GTCTC 3 cut(s) 9, 274, 497
BsnI GGCC 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 401, 685
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 7 cut(s) 75, 122, 131, 444, 461, 469, 570
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 2 cut(s) 644, 924
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 813
BspMAI CTGCAG 1 cut(s) 897
BspPI GGATC 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 3 cut(s) 320, 519, 1000
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 3 cut(s) 434, 472, 479
BssMI GATC 2 cut(s) 401, 685
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 434
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 4 cut(s) 218, 483, 605, 683
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 3 cut(s) 631, 816, 932
BstDSI CCRYGG 3 cut(s) 434, 472, 479
BstEII GGTNACC 1 cut(s) 483
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 117, 455, 579
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 404, 688
BstMAI GTCTC 3 cut(s) 9, 274, 497
BstMBI GATC 2 cut(s) 401, 685
BstMWI GCNNNNNNNGC 2 cut(s) 130, 1043
BstNI CCWGG 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 184, 885
BstSFI CTRYAG 1 cut(s) 893
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 6 cut(s) 514, 622, 637, 879, 907, 1017
BstXI CCANNNNNNTGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 477
BtgI CCRYGG 3 cut(s) 434, 472, 479
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 117, 455, 579
Cac8I GCNNGC 1 cut(s) 1044
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 5 cut(s) 476, 862, 914, 965, 1022
CseI GACGC 1 cut(s) 887
Csp6I GTAC 2 cut(s) 260, 979
CspCI CAANNNNNGTGG 4 cut(s) 58, 93, 187, 222
CviAII CATG 5 cut(s) 20, 435, 519, 664, 947
CviQI GTAC 2 cut(s) 260, 979
DdeI CTNAG 3 cut(s) 631, 816, 932
DpnI GATC 2 cut(s) 403, 687
DpnII GATC 2 cut(s) 401, 685
DriI GACNNNNNGTC 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 434
Eco47I GGWCC 4 cut(s) 862, 914, 965, 1022
Eco57I CTGAAG 2 cut(s) 357, 854
Eco91I GGTNACC 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO65I GGTNACC 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 5 cut(s) 23, 438, 522, 667, 950
FatI CATG 5 cut(s) 19, 434, 518, 663, 946
FauI CCCGC 2 cut(s) 129, 468
FblI GTMKAC 2 cut(s) 600, 624
Fnu4HI GCNGC 6 cut(s) 528, 636, 651, 893, 896, 1006
FokI GGATG 3 cut(s) 104, 442, 566
Fsp4HI GCNGC 6 cut(s) 528, 636, 651, 893, 896, 1006
FspBI CTAG 2 cut(s) 1047, 1069
GlaI GCGC 1 cut(s) 42
GluI GCNGC 6 cut(s) 528, 636, 651, 893, 896, 1006
HaeIII GGCC 1 cut(s) 477
HapII CCGG 2 cut(s) 886, 917
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 43
Hin1II CATG 5 cut(s) 23, 438, 522, 667, 950
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 58, 189, 202
HpaII CCGG 2 cut(s) 886, 917
HphI GGTGA 5 cut(s) 8, 161, 458, 606, 695
Hpy166II GTNNAC 3 cut(s) 592, 601, 625
Hpy188I TCNGA 1 cut(s) 903
Hpy188III TCNNGA 3 cut(s) 199, 498, 659
Hpy8I GTNNAC 3 cut(s) 592, 601, 625
Hpy99I CGWCG 1 cut(s) 626
HpyCH4III ACNGT 4 cut(s) 218, 483, 605, 683
HpyCH4IV ACGT 4 cut(s) 621, 705, 824, 952
HpyCH4V TGCA 7 cut(s) 530, 542, 895, 950, 994, 1005, 1056
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 1043
HpyF3I CTNAG 3 cut(s) 631, 816, 932
HpySE526I ACGT 4 cut(s) 621, 705, 824, 952
Hsp92II CATG 5 cut(s) 23, 438, 522, 667, 950
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 401, 685
LmnI GCTCC 4 cut(s) 184, 451, 889, 1034
Lsp1109I GCAGC 6 cut(s) 514, 622, 637, 879, 907, 1017
LweI GCATC 2 cut(s) 472, 1043
MaeI CTAG 2 cut(s) 1047, 1069
MaeII ACGT 4 cut(s) 621, 705, 824, 952
MaeIII GTNAC 3 cut(s) 483, 706, 748
MalI GATC 2 cut(s) 403, 687
MbiI CCGCTC 1 cut(s) 446
MboI GATC 2 cut(s) 401, 685
MboII GAAGA 4 cut(s) 93, 350, 665, 1062
MluCI AATT 1 cut(s) 45
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 473
MseI TTAA 2 cut(s) 266, 329
MslI CAYNNNNRTG 2 cut(s) 18, 471
MspA1I CMGCKG 2 cut(s) 527, 635
MspI CCGG 2 cut(s) 886, 917
MspR9I CCNGG 2 cut(s) 186, 887
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 130, 1043
NciI CCSGG 1 cut(s) 887
NcoI CCATGG 1 cut(s) 434
NdeII GATC 2 cut(s) 401, 685
NlaIII CATG 5 cut(s) 23, 438, 522, 667, 950
NlaIV GGNNCC 1 cut(s) 813
NmeAIII GCCGAG 1 cut(s) 546
NmuCI GTSAC 2 cut(s) 706, 748
NspV TTCGAA 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 2 cut(s) 58, 189
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 6 cut(s) 529, 637, 652, 894, 897, 1007
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PsiI TTATAA 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 483
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 5 cut(s) 476, 862, 914, 965, 1022
PstI CTGCAG 1 cut(s) 897
PsyI GACNNNGTC 1 cut(s) 520
PvuII CAGCTG 2 cut(s) 527, 635
RsaI GTAC 2 cut(s) 261, 980
RsaNI GTAC 2 cut(s) 260, 979
RseI CAYNNNNRTG 2 cut(s) 18, 471
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 2 cut(s) 266, 329
SatI GCNGC 6 cut(s) 528, 636, 651, 893, 896, 1006
Sau3AI GATC 2 cut(s) 401, 685
Sau96I GGNCC 5 cut(s) 476, 862, 914, 965, 1022
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 186, 887
SfaNI GCATC 2 cut(s) 472, 1043
SfcI CTRYAG 1 cut(s) 893
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 4 cut(s) 862, 914, 965, 1022
SmiMI CAYNNNNRTG 2 cut(s) 18, 471
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 1 cut(s) 45
SsiI CCGC 7 cut(s) 75, 122, 131, 444, 461, 469, 570
SspI AATATT 1 cut(s) 546
SspMI CTAG 2 cut(s) 1047, 1069
StyD4I CCNGG 2 cut(s) 184, 885
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 4 cut(s) 218, 483, 605, 683
TaiI ACGT 4 cut(s) 624, 708, 827, 955
TaqI TCGA 5 cut(s) 104, 311, 624, 660, 756
TasI AATT 1 cut(s) 45
TfiI GAWTC 2 cut(s) 58, 189
Tru1I TTAA 2 cut(s) 266, 329
Tru9I TTAA 2 cut(s) 266, 329
TseFI GTSAC 2 cut(s) 706, 748
TseI GCWGC 6 cut(s) 527, 635, 650, 892, 895, 1005
Tsp45I GTSAC 2 cut(s) 706, 748
TspDTI ATGAA 4 cut(s) 36, 833, 935, 1002
TspGWI ACGGA 1 cut(s) 402
Tth111I GACNNNGTC 1 cut(s) 520
VpaK11BI GGWCC 4 cut(s) 862, 914, 965, 1022
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 600, 624
XspI CTAG 2 cut(s) 1047, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.