pycom16g08820

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
5884475 .. 5885677
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08820.1

Sequence Viewer

Length: 1203 bp
ATGCCTCGCCCTGGTGACACCAACCCACATTTTGTCCGGCCATATCCGTCACAAACTCCAGAACAACTTCCACAAACATCTCCACACGGTCCATTGGTGCCACTCCCACAGCACCATGGCCAACACCCCGCGCCACCCAACCTCAGACCAGACTGGCCTGGACCGCATCACCCTGAACCACCAGAAGTCGAGCCAGAACCAATACAATTTGAGCAGGTTCGCCGGCCCCGGTCTAAGCATCAATGGCGGCATTCCAACCCAGCGGGTCCATTGGTGTCATTTCATCCACAATTCGAAGAACAACATCCGCTGACAGACCAGCAAACCCTACCACTAGTTCCATCAGTGCCAACCCCGCACCCTGATCATGAAGACCAACATCCTCGGAAAAAGCATCAAGGCCGGAAAACCCAGCCTGTAGTTCCACCCGTGGCAGCTCCATACCATGATCACGAAGACGAACGACATCCTAAGAAAAAGCATAAAGGCCGGAAAACCCCGCCTCTAGTTCCAACCGGGCCTTCCCCGTACCATGATCGTGAAGACAAACAATATCCCTGGCCACACGGTTCACAAGGGCAGCCGCATAGCCGACGTACTCACCCGCAGGGCTTGCTCATACCACGCCCTCAACCAACCAACGTCTTCACATGGTCCGGAGCCATTTGCTGTGCAATTTTTTGGGTTCTCATAATCATAACCGGCCTAGTGGTTCTCATAATCTATCTTGTTTTCCGTCCCCGGACTCCGAAATTCGACGTGTCTTCCGCCACGCTAAACGCAGCGTATCTTGACATGGGATATCTTCTCAATGCCGACGTTACAGTGCTGGCAAACTTCACCAACCCAAACAAGAAGGTCAGCGTCGACTTTAGCTACCCGATGATCGATCTATATTACGGAAATACCCTCATTGCCACCCAGTACGTAGAACCCTTCTCAGCAGAGAGGAGTCAGTCCATGTTTGCAAATGTTCACATGGTGGCCAGCCAGGTGCGTCTCGGAGTGCTGGAAAGCCAGAGGCTTAAGAAGCAGATGGAGAACAATCGGGCGGAGTTTGAGGTGAAGGGGTATTTCCGGGCACGAGCTAACTTCGGAAAGATCCTCCGATACTCGTACTGGTTGCACGGTGACTGCAGAGTGGTGCTTACTAGACCTCCTGATGGAGTTCTGGTGACTAGAAAATGCAAGACAAAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

45.77

Weight (kDa)

9.54

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 656
AclWI GGATC 1 cut(s) 1096
AcoI YGGCCR 4 cut(s) 38, 118, 560, 984
AcsI RAATTY 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 982
AfaI GTAC 4 cut(s) 530, 598, 926, 1118
AfiI CCNNNNNNNGG 2 cut(s) 11, 1163
AflII CTTAAG 1 cut(s) 1025
AflIII ACRYGT 1 cut(s) 759
AhlI ACTAGT 1 cut(s) 334
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 4 cut(s) 10, 157, 557, 990
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 3 cut(s) 437, 876, 1088
AluI AGCT 3 cut(s) 437, 876, 1088
Alw26I GTCTC 1 cut(s) 1004
AlwI GGATC 1 cut(s) 1096
Aor13HI TCCGGA 1 cut(s) 656
ApeKI GCWGC 3 cut(s) 434, 580, 782
ApoI RAATTY 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 6 cut(s) 89, 161, 225, 266, 518, 654
AsuC2I CCSGG 4 cut(s) 229, 517, 742, 1079
AsuHPI GGTGA 7 cut(s) 26, 161, 593, 832, 1075, 1142, 1186
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 4 cut(s) 89, 161, 266, 654
BaeGI GKGCMC 1 cut(s) 1084
BalI TGGCCA 3 cut(s) 120, 562, 986
BanI GGYRCC 1 cut(s) 97
BauI CACGAG 1 cut(s) 1083
BbsI GAAGAC 5 cut(s) 378, 462, 549, 637, 756
BbvI GCAGC 3 cut(s) 446, 592, 794
BccI CCATC 3 cut(s) 349, 1030, 1157
BciT130I CCWGG 4 cut(s) 12, 159, 559, 992
BclI TGATCA 2 cut(s) 364, 448
BcnI CCSGG 4 cut(s) 229, 517, 742, 1079
BcoDI GTCTC 1 cut(s) 1004
BcuI ACTAGT 1 cut(s) 334
BfaI CTAG 5 cut(s) 335, 506, 707, 1152, 1179
BfmI CTRYAG 2 cut(s) 417, 1135
BfrI CTTAAG 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 5 cut(s) 248, 435, 581, 584, 783
BlsI GCNGC 5 cut(s) 249, 436, 582, 585, 784
Bme1390I CCNGG 8 cut(s) 12, 159, 229, 517, 559, 742, 992, 1079
Bme18I GGWCC 4 cut(s) 89, 161, 266, 654
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 6 cut(s) 89, 161, 225, 266, 518, 654
BmiI GGNNCC 4 cut(s) 99, 227, 267, 661
BmrFI CCNGG 8 cut(s) 12, 159, 229, 517, 559, 742, 992, 1079
BmrI ACTGGG 1 cut(s) 916
BmsI GCATC 3 cut(s) 175, 247, 403
BmuI ACTGGG 1 cut(s) 916
BpiI GAAGAC 5 cut(s) 378, 462, 549, 637, 756
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 4 cut(s) 229, 517, 742, 1079
Bsa29I ATCGAT 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 928
BsaJI CCNNGG 7 cut(s) 10, 115, 227, 383, 429, 557, 740
BsaWI WCCGGW 1 cut(s) 656
BsaXI ACNNNNNCTCC 4 cut(s) 1141, 1158, 1171, 1188
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 1163
Bse118I RCCGGY 2 cut(s) 222, 701
Bse1I ACTGG 3 cut(s) 158, 922, 1124
Bse3DI GCAATG 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 656
BseBI CCWGG 4 cut(s) 12, 159, 559, 992
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 7 cut(s) 10, 115, 227, 383, 429, 557, 740
BseGI GGATG 4 cut(s) 283, 304, 379, 466
BseLI CCNNNNNNNGG 2 cut(s) 11, 1163
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 2 cut(s) 157, 954
BseNI ACTGG 3 cut(s) 158, 922, 1124
BseRI GAGGAG 1 cut(s) 964
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 3 cut(s) 446, 592, 794
BseYI CCCAGC 2 cut(s) 259, 411
Bsh1236I CGCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 888
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 2 cut(s) 11, 1163
BsmAI GTCTC 1 cut(s) 1004
BsmBI CGTCTC 1 cut(s) 1004
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 250
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp13I TCCGGA 1 cut(s) 656
Bsp143I GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
Bsp19I CCATGG 1 cut(s) 115
BspCNI CTCAG 2 cut(s) 156, 953
BspDI ATCGAT 1 cut(s) 888
BspEI TCCGGA 1 cut(s) 656
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 4 cut(s) 99, 227, 267, 661
BspMAI CTGCAG 1 cut(s) 1139
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 1096
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 2 cut(s) 222, 701
BsrI ACTGG 3 cut(s) 158, 922, 1124
BssAI RCCGGY 2 cut(s) 222, 701
BssECI CCNNGG 7 cut(s) 10, 115, 227, 383, 429, 557, 740
BssMI GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 4 cut(s) 12, 159, 559, 992
Bst4CI ACNGT 4 cut(s) 89, 569, 826, 1130
BstAFI CTTAAG 1 cut(s) 1025
BstAPI GCANNNNNTGC 1 cut(s) 613
BstBAI YACGTR 1 cut(s) 928
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 224, 614, 831, 988
BstDEI CTNAG 4 cut(s) 143, 234, 471, 940
BstDSI CCRYGG 2 cut(s) 115, 429
BstF5I GGATG 4 cut(s) 283, 304, 379, 466
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 6 cut(s) 367, 451, 538, 888, 892, 1104
BstMAI GTCTC 1 cut(s) 1004
BstMBI GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
BstMWI GCNNNNNNNGC 5 cut(s) 163, 244, 355, 613, 1030
BstNI CCWGG 4 cut(s) 12, 159, 559, 992
BstSCI CCNGG 8 cut(s) 10, 157, 227, 515, 557, 740, 990, 1077
BstSFI CTRYAG 2 cut(s) 417, 1135
BstSLI GKGCMC 1 cut(s) 1084
BstSNI TACGTA 1 cut(s) 928
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 446, 592, 794
BstV2I GAAGAC 5 cut(s) 378, 462, 549, 637, 756
BstX2I RGATCY 1 cut(s) 1101
BstYI RGATCY 1 cut(s) 1101
Bsu15I ATCGAT 1 cut(s) 888
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 2 cut(s) 115, 429
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 4 cut(s) 283, 304, 379, 466
BtsIMutI CAGTG 2 cut(s) 351, 831
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 4 cut(s) 224, 614, 831, 988
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 2 cut(s) 222, 701
Cfr13I GGNCC 6 cut(s) 89, 161, 225, 266, 518, 654
ClaI ATCGAT 1 cut(s) 888
CseI GACGC 2 cut(s) 853, 986
Csp6I GTAC 4 cut(s) 529, 597, 925, 1117
CviAII CATG 8 cut(s) 116, 368, 446, 533, 651, 796, 961, 979
CviQI GTAC 4 cut(s) 529, 597, 925, 1117
DdeI CTNAG 4 cut(s) 143, 234, 471, 940
DpnI GATC 6 cut(s) 366, 450, 537, 887, 891, 1103
DpnII GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
DraIII CACNNNGTG 1 cut(s) 982
EaeI YGGCCR 4 cut(s) 38, 118, 560, 984
EciI GGCGGA 2 cut(s) 757, 1067
Eco105I TACGTA 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 803
Eco47I GGWCC 4 cut(s) 89, 161, 266, 654
EcoRII CCWGG 4 cut(s) 10, 157, 557, 990
EcoRV GATATC 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 1004
FaeI CATG 8 cut(s) 119, 371, 449, 536, 654, 799, 964, 982
FaqI GGGAC 1 cut(s) 723
FatI CATG 8 cut(s) 115, 367, 445, 532, 650, 795, 960, 978
FauI CCCGC 5 cut(s) 136, 256, 363, 507, 612
FbaI TGATCA 2 cut(s) 364, 448
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 5 cut(s) 248, 435, 581, 584, 783
FokI GGATG 4 cut(s) 270, 291, 366, 453
Fsp4HI GCNGC 5 cut(s) 248, 435, 581, 584, 783
FspBI CTAG 5 cut(s) 335, 506, 707, 1152, 1179
GlaI GCGC 1 cut(s) 132
GluI GCNGC 5 cut(s) 248, 435, 581, 584, 783
GsaI CCCAGC 2 cut(s) 263, 415
GsuI CTGGAG 1 cut(s) 42
HgaI GACGC 2 cut(s) 853, 986
HhaI GCGC 1 cut(s) 133
Hin1II CATG 8 cut(s) 119, 371, 449, 536, 654, 799, 964, 982
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 2 cut(s) 745, 952
HphI GGTGA 7 cut(s) 26, 161, 593, 832, 1075, 1142, 1186
Hpy166II GTNNAC 3 cut(s) 572, 868, 976
Hpy188I TCNGA 6 cut(s) 146, 387, 750, 1004, 1097, 1109
Hpy188III TCNNGA 7 cut(s) 59, 368, 452, 539, 657, 791, 1160
Hpy8I GTNNAC 3 cut(s) 572, 868, 976
Hpy99I CGWCG 4 cut(s) 597, 761, 821, 869
HpyAV CCTTC 4 cut(s) 531, 850, 946, 1060
HpyCH4III ACNGT 4 cut(s) 89, 569, 826, 1130
HpyCH4IV ACGT 5 cut(s) 595, 642, 759, 819, 927
HpyCH4V TGCA 5 cut(s) 674, 968, 1126, 1137, 1188
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 244, 355, 613, 1030
HpyF3I CTNAG 4 cut(s) 143, 234, 471, 940
HpySE526I ACGT 5 cut(s) 595, 642, 759, 819, 927
Hsp92II CATG 8 cut(s) 119, 371, 449, 536, 654, 799, 964, 982
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 656
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Ksp22I TGATCA 2 cut(s) 364, 448
Kzo9I GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
LmnI GCTCC 2 cut(s) 442, 659
Lsp1109I GCAGC 3 cut(s) 446, 592, 794
LweI GCATC 3 cut(s) 175, 247, 403
MaeI CTAG 5 cut(s) 335, 506, 707, 1152, 1179
MaeII ACGT 5 cut(s) 595, 642, 759, 819, 927
MaeIII GTNAC 5 cut(s) 14, 48, 820, 1130, 1174
MalI GATC 6 cut(s) 366, 450, 537, 887, 891, 1103
MboI GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
MboII GAAGA 7 cut(s) 308, 383, 467, 554, 637, 756, 797
MflI RGATCY 1 cut(s) 1101
MhlI GDGCHC 1 cut(s) 1084
MlsI TGGCCA 3 cut(s) 120, 562, 986
MluCI AATT 4 cut(s) 206, 290, 675, 752
MluNI TGGCCA 3 cut(s) 120, 562, 986
MlyI GAGTC 2 cut(s) 739, 961
MmeI TCCRAC 2 cut(s) 279, 536
Mox20I TGGCCA 3 cut(s) 120, 562, 986
MroI TCCGGA 1 cut(s) 656
MroNI GCCGGC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 3 cut(s) 120, 562, 986
MseI TTAA 1 cut(s) 1026
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 3 cut(s) 120, 562, 986
MspA1I CMGCKG 2 cut(s) 263, 310
MspCI CTTAAG 1 cut(s) 1025
MspR9I CCNGG 8 cut(s) 12, 159, 229, 517, 559, 742, 992, 1079
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 4 cut(s) 12, 159, 559, 992
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 5 cut(s) 163, 244, 355, 613, 1030
NaeI GCCGGC 1 cut(s) 224
NciI CCSGG 4 cut(s) 229, 517, 742, 1079
NcoI CCATGG 1 cut(s) 115
NdeII GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 8 cut(s) 119, 371, 449, 536, 654, 799, 964, 982
NlaIV GGNNCC 4 cut(s) 99, 227, 267, 661
NmuCI GTSAC 4 cut(s) 14, 48, 1130, 1174
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 1 cut(s) 367
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 66
PkrI GCNGC 5 cut(s) 249, 436, 582, 585, 784
PleI GAGTC 2 cut(s) 739, 960
PpsI GAGTC 2 cut(s) 739, 960
Ppu21I YACGTR 1 cut(s) 928
Psp6I CCWGG 4 cut(s) 10, 157, 557, 990
PspFI CCCAGC 2 cut(s) 259, 411
PspGI CCWGG 4 cut(s) 10, 157, 557, 990
PspN4I GGNNCC 4 cut(s) 99, 227, 267, 661
PspPI GGNCC 6 cut(s) 89, 161, 225, 266, 518, 654
PstI CTGCAG 1 cut(s) 1139
PsuI RGATCY 1 cut(s) 1101
RsaI GTAC 4 cut(s) 530, 598, 926, 1118
RsaNI GTAC 4 cut(s) 529, 597, 925, 1117
RseI CAYNNNNRTG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 866
SaqAI TTAA 1 cut(s) 1026
SatI GCNGC 5 cut(s) 248, 435, 581, 584, 783
Sau3AI GATC 6 cut(s) 364, 448, 535, 885, 889, 1101
Sau96I GGNCC 6 cut(s) 89, 161, 225, 266, 518, 654
SchI GAGTC 2 cut(s) 739, 961
ScrFI CCNGG 8 cut(s) 12, 159, 229, 517, 559, 742, 992, 1079
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 3 cut(s) 175, 247, 403
SfcI CTRYAG 2 cut(s) 417, 1135
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 4 cut(s) 89, 161, 266, 654
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
SnaBI TACGTA 1 cut(s) 928
SpeI ACTAGT 1 cut(s) 334
Sse9I AATT 4 cut(s) 206, 290, 675, 752
SspMI CTAG 5 cut(s) 335, 506, 707, 1152, 1179
StyD4I CCNGG 8 cut(s) 10, 157, 227, 515, 557, 740, 990, 1077
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 4 cut(s) 89, 569, 826, 1130
TaiI ACGT 5 cut(s) 598, 645, 762, 822, 930
TaqI TCGA 5 cut(s) 189, 294, 756, 867, 888
TasI AATT 4 cut(s) 206, 290, 675, 752
TauI GCSGC 2 cut(s) 250, 586
Tru1I TTAA 1 cut(s) 1026
Tru9I TTAA 1 cut(s) 1026
TscAI CASTG 2 cut(s) 351, 831
TseFI GTSAC 4 cut(s) 14, 48, 1130, 1174
TseI GCWGC 3 cut(s) 434, 580, 782
Tsp45I GTSAC 4 cut(s) 14, 48, 1130, 1174
TspDTI ATGAA 2 cut(s) 272, 384
TspGWI ACGGA 3 cut(s) 36, 725, 915
TspRI CASTG 2 cut(s) 351, 831
Vha464I CTTAAG 1 cut(s) 1025
VpaK11BI GGWCC 4 cut(s) 89, 161, 266, 654
XapI RAATTY 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 867
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 5 cut(s) 335, 506, 707, 1152, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.