Rmu_co8522421.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8522421.1
OG0009904
Physical Location & Seq
Forward (+)
5432 .. 5839
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8522421.1_g000002.1.cds

Sequence Viewer

Length: 408 bp
atggggtatctcctcaatgcggactttactgtgctagtaaacttcaccaacccgaacaagaaggtgagcgtctacttcagtcctatgtacatttatgcttactatgggagcaccctcgttgctaccacatacattgaacccttcactgcacacaagcatcagtccatgtttgctagtgttcacatggtggctagtcaagttcctctcggattgctcgaaagccaaaggctgaagaagcagctggaaaacagtagagccggcttcgaattcaaaggctacttcagagcacgagctaaattcggaagcctgttgcgatactcttataaattacacggcgactgcaacgttgtgttctctagacctcctgatggggttatggttcatagaaaatgcaagacaaaacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

135

Amino Acids

15.49

Weight (kDa)

9.81

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccI GTMKAC 1 cut(s) 72
AciI CCGC 1 cut(s) 20
AclI AACGTT 1 cut(s) 345
AcsI RAATTY 2 cut(s) 266, 296
AcuI CTGAAG 3 cut(s) 61, 251, 265
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 19, 368
AgsI TTSAA 2 cut(s) 137, 271
AluBI AGCT 2 cut(s) 241, 293
AluI AGCT 2 cut(s) 241, 293
Alw21I GWGCWC 2 cut(s) 113, 289
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 266, 296
AsuHPI GGTGA 2 cut(s) 37, 76
AsuII TTCGAA 1 cut(s) 264
BauI CACGAG 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 113, 289
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 349
BfaI CTAG 4 cut(s) 35, 174, 192, 357
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmsI GCATC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 368
Bse118I RCCGGY 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 19, 368
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 113, 289
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 19, 368
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 113, 289
Bsp1407I TGTACA 1 cut(s) 87
BspACI CCGC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 257
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 31, 251
BstAUI TGTACA 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 2 cut(s) 166, 184
CviJI RGCY 9 cut(s) 191, 222, 229, 241, 257, 261, 276, 293, 306
CviKI_1 RGCY 9 cut(s) 191, 222, 229, 241, 257, 261, 276, 293, 306
CviQI GTAC 1 cut(s) 88
DraIII CACNNNGTG 1 cut(s) 187
Eco57I CTGAAG 3 cut(s) 61, 251, 265
EcoRI GAATTC 1 cut(s) 266
FaeI CATG 2 cut(s) 169, 187
FaiI YATR 9 cut(s) 86, 96, 105, 130, 167, 185, 324, 377, 384
FatI CATG 2 cut(s) 165, 183
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 4 cut(s) 35, 174, 192, 357
GluI GCNGC 1 cut(s) 239
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 169, 187
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 37, 76
Hpy166II GTNNAC 3 cut(s) 40, 73, 181
Hpy188I TCNGA 3 cut(s) 209, 284, 302
Hpy188III TCNNGA 2 cut(s) 357, 365
Hpy8I GTNNAC 3 cut(s) 40, 73, 181
HpyAV CCTTC 2 cut(s) 55, 151
HpyCH4III ACNGT 2 cut(s) 31, 251
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 149, 342, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 169, 187
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 227, 271, 320, 378
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 166
MaeI CTAG 4 cut(s) 35, 174, 192, 357
MaeII ACGT 1 cut(s) 345
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 113, 289
MluCI AATT 3 cut(s) 266, 296, 326
MnlI CCTC 4 cut(s) 23, 125, 213, 372
MroNI GCCGGC 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 259
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 169, 187
NspV TTCGAA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 240
PsiI TTATAA 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 1 cut(s) 239
SduI GDGCHC 2 cut(s) 113, 289
SetI ASST 5 cut(s) 66, 243, 295, 348, 364
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 264
Sse9I AATT 3 cut(s) 266, 296, 326
SsiI CCGC 1 cut(s) 20
SspMI CTAG 4 cut(s) 35, 174, 192, 357
TaaI ACNGT 2 cut(s) 31, 251
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 216, 264
TasI AATT 3 cut(s) 266, 296, 326
TatI WGTACW 1 cut(s) 87
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 1 cut(s) 151
XapI RAATTY 2 cut(s) 266, 296
XbaI TCTAGA 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 4 cut(s) 35, 174, 192, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.