Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009904

Physical Location & Seq

Genomic Coordinates Reverse (-)

54277631 .. 54278734

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCATCGGCCTCGCGATTCCAACCCTCATTTTGGTAGCCCATATGAAACACAGCAGCAAGGCCAATATCCCGAGTCACCACCACCTGGTTCATCTGTGCCACTACCACAGTATCAAGGTCAGCCCTCTGGACCACCGCCACCCAGTCCAGAATGGTCTGAATCACGGCAACCGATTCTGCATCAGCCAGCCCCAACCCGTCCCCAGGGGAAGTATGAAGGCCGCCAACCTCGGCCACTAGGTCCATTGGTGTCAATTCCTCACCATGAGCAAGACCCACATCCTCGGCCAAAGAAACAAAGCCGCCATTCTCAGCCACCACCAGTACCATTGGCACCAACTCCTCACCATGATCAAGACCAACAACATCCTGACCCGAAGCATCAAGGCCACGACTCCCGGCCACTAGTCCCAGGGGCGGCGCCAATCCCACACCATGTTGATCAAGACCACCAAACGCCACAACACCATACACCACATGGTTCGCATGGACAGCGACACGGTTCACAGCGGTTGCGCGTGCCAGAACCTCAACAAACCAACTTCTTCACATGGTCCTTAGGCGTGTGCTGCGCCATTTTTTGGATCCTCATAATCTTAGCAGGTCTCATTGTCCTCATTATCTATCTCGTCTTTCGTCCTCGGACCCCAAAGTTCGAAATTTCCACTGCCACACTAAACGCAGCATATCTCGACATGGGGTATCTCCTCAATGCGGACTTTACTGTGCTAGTAAACTTCACCAACCCGAACAAGAAGGTGAGCGTCTACTTCAGTCCTATGTACATTTATGCTTACTATGGGAGCACCCTCGTTGCTACCACATACATTGAACCCTTCACTGCACACAAGCATCAGTCCATGTTTGCAAGTGTTCACATGGTGGCTAGTCAGGTTCCTCTCGGATTGCTCGAAAGCCAAAGGCTGAAGAAGCAGCTGGAGAACGGTAGAGCCGGCTTCGAATTCAAAGGCTACTTCAGAGCACGAGCTAAGTTCGGAAGCCTGTTGCGATACTCTTATAAATTACACGGCGACTGCAACGTTGTGTTCTCTAGACCTCCTGATGGGGTTATGGTTCATAGAAAATGCAAGACAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

367

Amino Acids

41.52

Weight (kDa)

9.59

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13050 AT1G13050 AT1G13050 AT3G26350 AT3G26350
fragaria_vesca	FvH4_4g25410
malus_domestica	MD13G1103200.v1.1 MD16G1103400.v1.1
prunus_persica	Prupe.1G242600_v2.0.a1
pyrus_communis	pycom13g09020 pycom16g08820
rosa_chinensis	RchiOBHm_Chr4g0432721
rosa_multiflora	Rmu_co8522421.1_g000002 Rmu_sc0012180.1_g000011
rosa_roxburghii	Rroxscaffold_5G00374180
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316400 Rh4BG324400 Rh4CG339400 Rh4DG319700
rosa_wichuraiana	Rw4G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1020
Acc36I	ACCTGC	1 cut(s)	593
AccB1I	GGYRCC	2 cut(s)	334, 421
AccB7I	CCANNNNNTGG	2 cut(s)	86, 582
AccI	GTMKAC	1 cut(s)	768
AccII	CGCG	2 cut(s)	15, 519
AciI	CCGC	6 cut(s)	137, 223, 304, 419, 511, 716
AclI	AACGTT	1 cut(s)	1041
AclWI	GGATC	2 cut(s)	580, 593
AcoI	YGGCCR	3 cut(s)	233, 287, 401
AcsI	RAATTY	2 cut(s)	660, 962
AcuI	CTGAAG	3 cut(s)	757, 947, 961
AcyI	GRCGYC	1 cut(s)	422
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	2 cut(s)	327, 785
AfiI	CCNNNNNNNGG	7 cut(s)	32, 86, 205, 418, 582, 715, 1064
AgsI	TTSAA	2 cut(s)	833, 967
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	3 cut(s)	85, 204, 412
AluBI	AGCT	2 cut(s)	937, 989
AluI	AGCT	2 cut(s)	937, 989
Alw21I	GWGCWC	2 cut(s)	809, 985
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	2 cut(s)	580, 593
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	7 cut(s)	8, 61, 220, 233, 287, 388, 401
ApeKI	GCWGC	4 cut(s)	55, 570, 683, 934
ApoI	RAATTY	2 cut(s)	660, 962
AspLEI	GCGC	3 cut(s)	424, 519, 575
AspS9I	GGNCC	4 cut(s)	131, 242, 555, 645
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	5 cut(s)	69, 254, 338, 733, 772
AsuII	TTCGAA	2 cut(s)	657, 960
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	4 cut(s)	131, 242, 555, 645
AxyI	CCTNAGG	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	95, 128
BamHI	GGATCC	1 cut(s)	585
BanI	GGYRCC	2 cut(s)	334, 421
BauI	CACGAG	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	809, 985
BbvI	GCAGC	4 cut(s)	67, 557, 695, 946
BccI	CCATC	1 cut(s)	1058
BceAI	ACGGC	2 cut(s)	182, 1045
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	87, 206, 414
BclI	TGATCA	2 cut(s)	352, 442
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	611
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	5 cut(s)	239, 407, 731, 888, 1053
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	593
BisI	GCNGC	7 cut(s)	56, 223, 304, 420, 571, 684, 935
BlsI	GCNGC	7 cut(s)	57, 224, 305, 421, 572, 685, 936
Bme1390I	CCNGG	4 cut(s)	87, 206, 400, 414
Bme18I	GGWCC	4 cut(s)	131, 242, 555, 645
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	4 cut(s)	131, 242, 555, 645
BmiI	GGNNCC	5 cut(s)	336, 423, 587, 647, 897
BmrFI	CCNGG	4 cut(s)	87, 206, 400, 414
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	13, 190, 391, 862
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	959
Bpu14I	TTCGAA	2 cut(s)	657, 960
BpuMI	CCSGG	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	7 cut(s)	204, 205, 230, 284, 412, 413, 641
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 86, 205, 418, 582, 715, 1064
Bse118I	RCCGGY	1 cut(s)	953
Bse1I	ACTGG	2 cut(s)	144, 323
Bse21I	CCTNAGG	1 cut(s)	559
BseBI	CCWGG	3 cut(s)	87, 206, 414
BseDI	CCNNGG	7 cut(s)	204, 205, 230, 284, 412, 413, 641
BseGI	GGATG	2 cut(s)	280, 367
BseLI	CCNNNNNNNGG	7 cut(s)	32, 86, 205, 418, 582, 715, 1064
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	144, 323
BseRI	GAGGAG	2 cut(s)	333, 698
BseXI	GCAGC	4 cut(s)	67, 557, 695, 946
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	2 cut(s)	15, 519
BshFI	GGCC	7 cut(s)	10, 63, 222, 235, 289, 390, 403
BshNI	GGYRCC	2 cut(s)	334, 421
BsiHKAI	GWGCWC	2 cut(s)	809, 985
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	400, 954
BslFI	GGGAC	2 cut(s)	186, 395
BslI	CCNNNNNNNGG	7 cut(s)	32, 86, 205, 418, 582, 715, 1064
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	2 cut(s)	186, 395
BsnI	GGCC	7 cut(s)	10, 63, 222, 235, 289, 390, 403
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	71
Bsp119I	TTCGAA	2 cut(s)	657, 960
Bsp1286I	GDGCHC	2 cut(s)	809, 985
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	352, 442, 585
Bsp68I	TCGCGA	1 cut(s)	15
BspACI	CCGC	6 cut(s)	137, 223, 304, 419, 511, 716
BspANI	GGCC	7 cut(s)	10, 63, 222, 235, 289, 390, 403
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	15, 519
BspLI	GGNNCC	5 cut(s)	336, 423, 587, 647, 897
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	580, 593
BspT104I	TTCGAA	2 cut(s)	657, 960
BspT107I	GGYRCC	2 cut(s)	334, 421
BspTNI	GGTCTC	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	953
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	144, 323
BssAI	RCCGGY	1 cut(s)	953
BssECI	CCNNGG	7 cut(s)	204, 205, 230, 284, 412, 413, 641
BssMI	GATC	3 cut(s)	352, 442, 585
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	3 cut(s)	87, 206, 414
Bst4CI	ACNGT	4 cut(s)	111, 503, 727, 947
BstACI	GRCGYC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	783
BstBI	TTCGAA	2 cut(s)	657, 960
BstC8I	GCNNGC	3 cut(s)	189, 521, 955
BstDEI	CTNAG	4 cut(s)	312, 559, 598, 990
BstF5I	GGATG	2 cut(s)	280, 367
BstFNI	CGCG	2 cut(s)	15, 519
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	3 cut(s)	424, 519, 575
BstKTI	GATC	3 cut(s)	355, 445, 588
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	3 cut(s)	352, 442, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	493, 570, 931
BstNI	CCWGG	3 cut(s)	87, 206, 414
BstSCI	CCNGG	4 cut(s)	85, 204, 398, 412
BstUI	CGCG	2 cut(s)	15, 519
BstV1I	GCAGC	4 cut(s)	67, 557, 695, 946
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	559
BsuRI	GGCC	7 cut(s)	10, 63, 222, 235, 289, 390, 403
BtsCI	GGATG	2 cut(s)	280, 367
BtsI	GCAGTG	2 cut(s)	666, 840
BtsIMutI	CAGTG	2 cut(s)	666, 840
BtuMI	TCGCGA	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	3 cut(s)	189, 521, 955
CfoI	GCGC	3 cut(s)	424, 519, 575
Cfr10I	RCCGGY	1 cut(s)	953
Cfr13I	GGNCC	4 cut(s)	131, 242, 555, 645
CseI	GACGC	1 cut(s)	754
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	326, 784
CspCI	CAANNNNNGTGG	2 cut(s)	811, 846
CviAII	CATG	9 cut(s)	266, 350, 437, 479, 488, 552, 697, 862, 880
CviQI	GTAC	2 cut(s)	326, 784
DdeI	CTNAG	4 cut(s)	312, 559, 598, 990
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	3 cut(s)	354, 444, 587
DpnII	GATC	3 cut(s)	352, 442, 585
DraIII	CACNNNGTG	1 cut(s)	883
EaeI	YGGCCR	3 cut(s)	233, 287, 401
Eco31I	GGTCTC	1 cut(s)	611
Eco47I	GGWCC	4 cut(s)	131, 242, 555, 645
Eco57I	CTGAAG	3 cut(s)	757, 947, 961
Eco81I	CCTNAGG	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	962
EcoRII	CCWGG	3 cut(s)	85, 204, 412
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
FaeI	CATG	9 cut(s)	269, 353, 440, 482, 491, 555, 700, 865, 883
FaqI	GGGAC	2 cut(s)	186, 395
FatI	CATG	9 cut(s)	265, 349, 436, 478, 487, 551, 696, 861, 879
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	2 cut(s)	352, 442
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	7 cut(s)	56, 223, 304, 420, 571, 684, 935
FokI	GGATG	2 cut(s)	267, 354
Fsp4HI	GCNGC	7 cut(s)	56, 223, 304, 420, 571, 684, 935
FspBI	CTAG	5 cut(s)	239, 407, 731, 888, 1053
GlaI	GCGC	3 cut(s)	423, 518, 574
GluI	GCNGC	7 cut(s)	56, 223, 304, 420, 571, 684, 935
GsuI	CTGGAG	1 cut(s)	959
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	7 cut(s)	10, 63, 222, 235, 289, 390, 403
HapII	CCGG	2 cut(s)	400, 954
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	3 cut(s)	424, 519, 575
Hin1I	GRCGYC	1 cut(s)	422
Hin1II	CATG	9 cut(s)	269, 353, 440, 482, 491, 555, 700, 865, 883
Hin6I	GCGC	3 cut(s)	422, 517, 573
HinP1I	GCGC	3 cut(s)	422, 517, 573
HinfI	GANTC	5 cut(s)	17, 74, 161, 175, 395
HpaII	CCGG	2 cut(s)	400, 954
HphI	GGTGA	5 cut(s)	69, 254, 338, 733, 772
Hpy166II	GTNNAC	4 cut(s)	506, 736, 769, 877
Hpy188I	TCNGA	5 cut(s)	160, 645, 905, 980, 998
Hpy8I	GTNNAC	4 cut(s)	506, 736, 769, 877
HpyAV	CCTTC	3 cut(s)	212, 751, 847
HpyCH4III	ACNGT	4 cut(s)	111, 503, 727, 947
HpyCH4IV	ACGT	1 cut(s)	1041
HpyCH4V	TGCA	6 cut(s)	4, 181, 845, 869, 1038, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	493, 570, 931
HpyF3I	CTNAG	4 cut(s)	312, 559, 598, 990
HpySE526I	ACGT	1 cut(s)	1041
Hsp92I	GRCGYC	1 cut(s)	422
Hsp92II	CATG	9 cut(s)	269, 353, 440, 482, 491, 555, 700, 865, 883
HspAI	GCGC	3 cut(s)	422, 517, 573
KasI	GGCGCC	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	953
KroNI	GCCGGC	1 cut(s)	955
Ksp22I	TGATCA	2 cut(s)	352, 442
Kzo9I	GATC	3 cut(s)	352, 442, 585
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	4 cut(s)	67, 557, 695, 946
LweI	GCATC	4 cut(s)	13, 190, 391, 862
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	5 cut(s)	239, 407, 731, 888, 1053
MaeII	ACGT	1 cut(s)	1041
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	3 cut(s)	354, 444, 587
MboI	GATC	3 cut(s)	352, 442, 585
MboII	GAAGA	2 cut(s)	538, 940
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	809, 985
MluCI	AATT	4 cut(s)	255, 660, 962, 1022
Mly113I	GGCGCC	1 cut(s)	422
MlyI	GAGTC	2 cut(s)	83, 389
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	953
MspA1I	CMGCKG	2 cut(s)	511, 937
MspI	CCGG	2 cut(s)	400, 954
MspR9I	CCNGG	4 cut(s)	87, 206, 400, 414
MvaI	CCWGG	3 cut(s)	87, 206, 414
MvnI	CGCG	2 cut(s)	15, 519
MwoI	GCNNNNNNNGC	3 cut(s)	493, 570, 931
NaeI	GCCGGC	1 cut(s)	955
NarI	GGCGCC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	400
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	3 cut(s)	352, 442, 585
NgoMIV	GCCGGC	1 cut(s)	953
NlaIII	CATG	9 cut(s)	269, 353, 440, 482, 491, 555, 700, 865, 883
NlaIV	GGNNCC	5 cut(s)	336, 423, 587, 647, 897
NmeAIII	GCCGAG	2 cut(s)	211, 265
NmuCI	GTSAC	1 cut(s)	75
NruI	TCGCGA	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	2 cut(s)	657, 960
PasI	CCCWGGG	2 cut(s)	205, 413
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PdiI	GCCGGC	1 cut(s)	955
PfeI	GAWTC	3 cut(s)	17, 161, 175
PflMI	CCANNNNNTGG	2 cut(s)	86, 582
PkrI	GCNGC	7 cut(s)	57, 224, 305, 421, 572, 685, 936
PleI	GAGTC	2 cut(s)	82, 389
PluTI	GGCGCC	1 cut(s)	425
PpsI	GAGTC	2 cut(s)	82, 389
PsiI	TTATAA	1 cut(s)	1020
Psp1406I	AACGTT	1 cut(s)	1041
Psp6I	CCWGG	3 cut(s)	85, 204, 412
PspGI	CCWGG	3 cut(s)	85, 204, 412
PspN4I	GGNNCC	5 cut(s)	336, 423, 587, 647, 897
PspPI	GGNCC	4 cut(s)	131, 242, 555, 645
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	937
RruI	TCGCGA	1 cut(s)	15
RsaI	GTAC	2 cut(s)	327, 785
RsaNI	GTAC	2 cut(s)	326, 784
SatI	GCNGC	7 cut(s)	56, 223, 304, 420, 571, 684, 935
Sau3AI	GATC	3 cut(s)	352, 442, 585
Sau96I	GGNCC	4 cut(s)	131, 242, 555, 645
SchI	GAGTC	2 cut(s)	83, 389
ScrFI	CCNGG	4 cut(s)	87, 206, 400, 414
SduI	GDGCHC	2 cut(s)	809, 985
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	4 cut(s)	13, 190, 391, 862
SfoI	GGCGCC	1 cut(s)	423
SfuI	TTCGAA	2 cut(s)	657, 960
SinI	GGWCC	4 cut(s)	131, 242, 555, 645
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	4 cut(s)	255, 660, 962, 1022
SsiI	CCGC	6 cut(s)	137, 223, 304, 419, 511, 716
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	5 cut(s)	239, 407, 731, 888, 1053
StyD4I	CCNGG	4 cut(s)	85, 204, 398, 412
TaaI	ACNGT	4 cut(s)	111, 503, 727, 947
TaiI	ACGT	1 cut(s)	1044
TaqI	TCGA	4 cut(s)	657, 693, 912, 960
TasI	AATT	4 cut(s)	255, 660, 962, 1022
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	3 cut(s)	225, 306, 422
TfiI	GAWTC	3 cut(s)	17, 161, 175
TscAI	CASTG	2 cut(s)	673, 847
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	4 cut(s)	55, 570, 683, 934
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	4 cut(s)	60, 81, 231, 1067
TspRI	CASTG	2 cut(s)	673, 847
Van91I	CCANNNNNTGG	2 cut(s)	86, 582
VpaK11BI	GGWCC	4 cut(s)	131, 242, 555, 645
XapI	RAATTY	2 cut(s)	660, 962
XbaI	TCTAGA	1 cut(s)	1052
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	5 cut(s)	239, 407, 731, 888, 1053
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.