Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009904

Physical Location & Seq

Genomic Coordinates Reverse (-)

49036558 .. 49037658

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCATCCGCCTCGCGATTCCAACCCTCATTTTGGCAGCCCATATCAAACACAGCAGCAAGGCCAATATCCCGAGTCACCACCACCTGGTTCATTTGTGCCACTACCACAGTATCAAGGTCAGCCCTCTGGACCACCGCCACCCAGTCCAGAATATTCTGAACCCCGGCAACCGATTCTGCGTGAGCCAGCCCCAACCCGTCCCCAGGGGAAGTATCAAGGCCGCCAACATCGGCCACTTGGTCCATTGGTGTCAATTCCTCACCATGAGCAAGACCAACATCCTCGGCCAAAGAAACAAAGCCGCCATTCTCAGCCACCACCAGTACCATTGGCACCAACTCCTCACCATGATCAAGACCAACAACATCCTGACCCGAAGCATCAAGGCCACGACTCCCTGCCACTAGTCCCAGGGGCGGCACCAATCCCACACCATGCTCAAGACCACCAAACGGCACAACACCATACACCACATGGTTCGCATGGACAGCGACACGGTTCACAGCGGTTGCGCGTGCCAGAACCTCAACAAACCAACTTCTTCACATGGTCCTTAGGCGTGTGCTGCGCCATTTTTTGGATCCTCGTAATCTTAGCAGGTCTCATTGTCCTCATTGTCTATCTCGTCTTTCGTCCTCGGACCCCAAAGTTCGAAATTTCCACTGCCACACTCAACGCAGCATATCTCGACATGGGGTATCTCCTCAATGCGGACCTTACTGTGCTAGTAAACTTCACCAACCCGAACAAGAAGGTGAGCGTCTACTTCAGTCCTATGTACATTTATGCTTACTATGGGAGCACCCTCGTTGCTACCACATACATTGAACCCTTCACTGCACACAAGCATCAGTCCATGTTTGCAAGTGTTCACATGGTGGCTAGTCAGGTTCCTCTCGGATTGCTCGAAAGCCAAAGGCTGAAGAAGCAGCTGGAGAACAGTAGAGCCGGCTTCGAATTCAAAGGCTACTTCAGAGCACGAGCTAATTTCGGAAGCCTGTTGCGATACTCTTATAAAATACACGGCGACTGCAACGTTGTGTTCTCTAGACCTCCTGATGGGGTTATGGTTCATAGAAAATGCAAGACAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

366

Amino Acids

41.34

Weight (kDa)

9.59

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13050 AT1G13050 AT1G13050 AT3G26350 AT3G26350
fragaria_vesca	FvH4_4g25410
malus_domestica	MD13G1103200.v1.1 MD16G1103400.v1.1
prunus_persica	Prupe.1G242600_v2.0.a1
pyrus_communis	pycom13g09020 pycom16g08820
rosa_chinensis	RchiOBHm_Chr4g0432721
rosa_multiflora	Rmu_co8522421.1_g000002 Rmu_sc0012180.1_g000011
rosa_roxburghii	Rroxscaffold_5G00374180
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316400 Rh4BG324400 Rh4CG339400 Rh4DG319700
rosa_wichuraiana	Rw4G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1017
Acc36I	ACCTGC	1 cut(s)	590
AccB1I	GGYRCC	2 cut(s)	334, 421
AccB7I	CCANNNNNTGG	2 cut(s)	86, 579
AccI	GTMKAC	1 cut(s)	765
AccII	CGCG	2 cut(s)	15, 516
AciI	CCGC	7 cut(s)	8, 137, 223, 304, 419, 508, 713
AclI	AACGTT	1 cut(s)	1038
AclWI	GGATC	2 cut(s)	577, 590
AcoI	YGGCCR	2 cut(s)	233, 287
AcsI	RAATTY	2 cut(s)	657, 959
AcuI	CTGAAG	3 cut(s)	754, 944, 958
AdeI	CACNNNGTG	1 cut(s)	880
AfaI	GTAC	2 cut(s)	327, 782
AfiI	CCNNNNNNNGG	8 cut(s)	32, 86, 205, 418, 454, 579, 712, 1061
AgsI	TTSAA	2 cut(s)	830, 964
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	3 cut(s)	85, 204, 412
AluBI	AGCT	2 cut(s)	934, 986
AluI	AGCT	2 cut(s)	934, 986
Alw21I	GWGCWC	2 cut(s)	806, 982
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	577, 590
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	5 cut(s)	61, 220, 233, 287, 388
ApeKI	GCWGC	5 cut(s)	36, 55, 567, 680, 931
ApoI	RAATTY	2 cut(s)	657, 959
AspLEI	GCGC	2 cut(s)	516, 572
AspS9I	GGNCC	5 cut(s)	131, 242, 552, 642, 715
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	5 cut(s)	69, 254, 338, 730, 769
AsuII	TTCGAA	2 cut(s)	654, 957
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	5 cut(s)	131, 242, 552, 642, 715
AxyI	CCTNAGG	1 cut(s)	556
BaeI	ACNNNNGTAYC	2 cut(s)	95, 128
BamHI	GGATCC	1 cut(s)	582
BanI	GGYRCC	2 cut(s)	334, 421
BauI	CACGAG	1 cut(s)	981
Bbv12I	GWGCWC	2 cut(s)	806, 982
BbvI	GCAGC	5 cut(s)	48, 67, 554, 692, 943
BccI	CCATC	1 cut(s)	1055
BceAI	ACGGC	2 cut(s)	471, 1042
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	87, 206, 414
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	608
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	407, 728, 885, 1050
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	8 cut(s)	37, 56, 223, 304, 420, 568, 681, 932
BlsI	GCNGC	8 cut(s)	38, 57, 224, 305, 421, 569, 682, 933
Bme1390I	CCNGG	4 cut(s)	87, 166, 206, 414
Bme18I	GGWCC	5 cut(s)	131, 242, 552, 642, 715
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	5 cut(s)	131, 242, 552, 642, 715
BmiI	GGNNCC	5 cut(s)	336, 423, 584, 644, 894
BmrFI	CCNGG	4 cut(s)	87, 166, 206, 414
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	13, 391, 859
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	956
Bpu14I	TTCGAA	2 cut(s)	654, 957
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	7 cut(s)	164, 204, 205, 284, 412, 413, 638
Bsc4I	CCNNNNNNNGG	8 cut(s)	32, 86, 205, 418, 454, 579, 712, 1061
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	2 cut(s)	144, 323
Bse21I	CCTNAGG	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	87, 206, 414
BseDI	CCNNGG	7 cut(s)	164, 204, 205, 284, 412, 413, 638
BseGI	GGATG	3 cut(s)	4, 280, 367
BseLI	CCNNNNNNNGG	8 cut(s)	32, 86, 205, 418, 454, 579, 712, 1061
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	144, 323
BseRI	GAGGAG	2 cut(s)	333, 695
BseXI	GCAGC	5 cut(s)	48, 67, 554, 692, 943
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	2 cut(s)	15, 516
BshFI	GGCC	5 cut(s)	63, 222, 235, 289, 390
BshNI	GGYRCC	2 cut(s)	334, 421
BsiHKAI	GWGCWC	2 cut(s)	806, 982
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	166, 951
BslFI	GGGAC	2 cut(s)	186, 395
BslI	CCNNNNNNNGG	8 cut(s)	32, 86, 205, 418, 454, 579, 712, 1061
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	186, 395
BsnI	GGCC	5 cut(s)	63, 222, 235, 289, 390
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	71
Bsp119I	TTCGAA	2 cut(s)	654, 957
Bsp1286I	GDGCHC	2 cut(s)	806, 982
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	2 cut(s)	352, 582
Bsp68I	TCGCGA	1 cut(s)	15
BspACI	CCGC	7 cut(s)	8, 137, 223, 304, 419, 508, 713
BspANI	GGCC	5 cut(s)	63, 222, 235, 289, 390
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	15, 516
BspLI	GGNNCC	5 cut(s)	336, 423, 584, 644, 894
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	577, 590
BspT104I	TTCGAA	2 cut(s)	654, 957
BspT107I	GGYRCC	2 cut(s)	334, 421
BspTNI	GGTCTC	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	950
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	144, 323
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	7 cut(s)	164, 204, 205, 284, 412, 413, 638
BssMI	GATC	2 cut(s)	352, 582
BssSI	CACGAG	1 cut(s)	981
Bst2BI	CACGAG	1 cut(s)	981
Bst2UI	CCWGG	3 cut(s)	87, 206, 414
Bst4CI	ACNGT	4 cut(s)	111, 500, 724, 944
BstAUI	TGTACA	1 cut(s)	780
BstBI	TTCGAA	2 cut(s)	654, 957
BstC8I	GCNNGC	3 cut(s)	189, 518, 952
BstDEI	CTNAG	3 cut(s)	312, 556, 595
BstF5I	GGATG	3 cut(s)	4, 280, 367
BstFNI	CGCG	2 cut(s)	15, 516
BstHHI	GCGC	2 cut(s)	516, 572
BstKTI	GATC	2 cut(s)	355, 585
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	2 cut(s)	352, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 567, 928
BstNI	CCWGG	3 cut(s)	87, 206, 414
BstSCI	CCNGG	4 cut(s)	85, 164, 204, 412
BstUI	CGCG	2 cut(s)	15, 516
BstV1I	GCAGC	5 cut(s)	48, 67, 554, 692, 943
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
Bsu36I	CCTNAGG	1 cut(s)	556
BsuRI	GGCC	5 cut(s)	63, 222, 235, 289, 390
BtsCI	GGATG	3 cut(s)	4, 280, 367
BtsI	GCAGTG	2 cut(s)	663, 837
BtsIMutI	CAGTG	2 cut(s)	663, 837
BtuMI	TCGCGA	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	3 cut(s)	189, 518, 952
CfoI	GCGC	2 cut(s)	516, 572
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	5 cut(s)	131, 242, 552, 642, 715
CseI	GACGC	1 cut(s)	751
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	326, 781
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	9 cut(s)	266, 350, 437, 476, 485, 549, 694, 859, 877
CviQI	GTAC	2 cut(s)	326, 781
DdeI	CTNAG	3 cut(s)	312, 556, 595
DpnI	GATC	2 cut(s)	354, 584
DpnII	GATC	2 cut(s)	352, 582
DraIII	CACNNNGTG	1 cut(s)	880
EaeI	YGGCCR	2 cut(s)	233, 287
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	5 cut(s)	131, 242, 552, 642, 715
Eco57I	CTGAAG	3 cut(s)	754, 944, 958
Eco81I	CCTNAGG	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	959
EcoRII	CCWGG	3 cut(s)	85, 204, 412
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	9 cut(s)	269, 353, 440, 479, 488, 552, 697, 862, 880
FaqI	GGGAC	2 cut(s)	186, 395
FatI	CATG	9 cut(s)	265, 349, 436, 475, 484, 548, 693, 858, 876
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	8 cut(s)	37, 56, 223, 304, 420, 568, 681, 932
FokI	GGATG	2 cut(s)	267, 354
Fsp4HI	GCNGC	8 cut(s)	37, 56, 223, 304, 420, 568, 681, 932
FspBI	CTAG	4 cut(s)	407, 728, 885, 1050
GlaI	GCGC	2 cut(s)	515, 571
GluI	GCNGC	8 cut(s)	37, 56, 223, 304, 420, 568, 681, 932
GsuI	CTGGAG	1 cut(s)	956
HaeIII	GGCC	5 cut(s)	63, 222, 235, 289, 390
HapII	CCGG	2 cut(s)	166, 951
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	2 cut(s)	516, 572
Hin1II	CATG	9 cut(s)	269, 353, 440, 479, 488, 552, 697, 862, 880
Hin6I	GCGC	2 cut(s)	514, 570
HinP1I	GCGC	2 cut(s)	514, 570
HinfI	GANTC	4 cut(s)	17, 74, 175, 395
HpaII	CCGG	2 cut(s)	166, 951
HphI	GGTGA	5 cut(s)	69, 254, 338, 730, 769
Hpy166II	GTNNAC	4 cut(s)	503, 733, 766, 874
Hpy188I	TCNGA	5 cut(s)	160, 642, 902, 977, 995
Hpy8I	GTNNAC	4 cut(s)	503, 733, 766, 874
HpyAV	CCTTC	2 cut(s)	748, 844
HpyCH4III	ACNGT	4 cut(s)	111, 500, 724, 944
HpyCH4IV	ACGT	1 cut(s)	1038
HpyCH4V	TGCA	5 cut(s)	4, 842, 866, 1035, 1086
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 567, 928
HpyF3I	CTNAG	3 cut(s)	312, 556, 595
HpySE526I	ACGT	1 cut(s)	1038
Hsp92II	CATG	9 cut(s)	269, 353, 440, 479, 488, 552, 697, 862, 880
HspAI	GCGC	2 cut(s)	514, 570
KroI	GCCGGC	1 cut(s)	950
KroNI	GCCGGC	1 cut(s)	952
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	352, 582
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	5 cut(s)	48, 67, 554, 692, 943
LweI	GCATC	3 cut(s)	13, 391, 859
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	4 cut(s)	407, 728, 885, 1050
MaeII	ACGT	1 cut(s)	1038
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	2 cut(s)	354, 584
MboI	GATC	2 cut(s)	352, 582
MboII	GAAGA	2 cut(s)	535, 937
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	2 cut(s)	806, 982
MluCI	AATT	4 cut(s)	255, 657, 959, 988
MlyI	GAGTC	2 cut(s)	83, 389
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	950
MspA1I	CMGCKG	2 cut(s)	508, 934
MspI	CCGG	2 cut(s)	166, 951
MspR9I	CCNGG	4 cut(s)	87, 166, 206, 414
MvaI	CCWGG	3 cut(s)	87, 206, 414
MvnI	CGCG	2 cut(s)	15, 516
MwoI	GCNNNNNNNGC	3 cut(s)	490, 567, 928
NaeI	GCCGGC	1 cut(s)	952
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	352, 582
NgoMIV	GCCGGC	1 cut(s)	950
NlaIII	CATG	9 cut(s)	269, 353, 440, 479, 488, 552, 697, 862, 880
NlaIV	GGNNCC	5 cut(s)	336, 423, 584, 644, 894
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	75
NruI	TCGCGA	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	2 cut(s)	654, 957
PasI	CCCWGGG	2 cut(s)	205, 413
PcsI	WCGNNNNNNNCGW	1 cut(s)	906
PdiI	GCCGGC	1 cut(s)	952
PfeI	GAWTC	2 cut(s)	17, 175
PflMI	CCANNNNNTGG	2 cut(s)	86, 579
PkrI	GCNGC	8 cut(s)	38, 57, 224, 305, 421, 569, 682, 933
PleI	GAGTC	2 cut(s)	82, 389
PpsI	GAGTC	2 cut(s)	82, 389
PsiI	TTATAA	1 cut(s)	1017
Psp1406I	AACGTT	1 cut(s)	1038
Psp6I	CCWGG	3 cut(s)	85, 204, 412
PspGI	CCWGG	3 cut(s)	85, 204, 412
PspN4I	GGNNCC	5 cut(s)	336, 423, 584, 644, 894
PspPI	GGNCC	5 cut(s)	131, 242, 552, 642, 715
PsuI	RGATCY	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	934
RruI	TCGCGA	1 cut(s)	15
RsaI	GTAC	2 cut(s)	327, 782
RsaNI	GTAC	2 cut(s)	326, 781
SatI	GCNGC	8 cut(s)	37, 56, 223, 304, 420, 568, 681, 932
Sau3AI	GATC	2 cut(s)	352, 582
Sau96I	GGNCC	5 cut(s)	131, 242, 552, 642, 715
SchI	GAGTC	2 cut(s)	83, 389
ScrFI	CCNGG	4 cut(s)	87, 166, 206, 414
SduI	GDGCHC	2 cut(s)	806, 982
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	3 cut(s)	13, 391, 859
SfuI	TTCGAA	2 cut(s)	654, 957
SinI	GGWCC	5 cut(s)	131, 242, 552, 642, 715
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	4 cut(s)	255, 657, 959, 988
SsiI	CCGC	7 cut(s)	8, 137, 223, 304, 419, 508, 713
SspI	AATATT	1 cut(s)	155
SspMI	CTAG	4 cut(s)	407, 728, 885, 1050
StyD4I	CCNGG	4 cut(s)	85, 164, 204, 412
TaaI	ACNGT	4 cut(s)	111, 500, 724, 944
TaiI	ACGT	1 cut(s)	1041
TaqI	TCGA	4 cut(s)	654, 690, 909, 957
TasI	AATT	4 cut(s)	255, 657, 959, 988
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	3 cut(s)	225, 306, 422
TfiI	GAWTC	2 cut(s)	17, 175
TscAI	CASTG	2 cut(s)	670, 844
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	5 cut(s)	36, 55, 567, 680, 931
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	81, 1064
TspRI	CASTG	2 cut(s)	670, 844
Van91I	CCANNNNNTGG	2 cut(s)	86, 579
VpaK11BI	GGWCC	5 cut(s)	131, 242, 552, 642, 715
XapI	RAATTY	2 cut(s)	657, 959
XbaI	TCTAGA	1 cut(s)	1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	765
XspI	CTAG	4 cut(s)	407, 728, 885, 1050
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.