Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009904

Physical Location & Seq

Genomic Coordinates Reverse (-)

25641146 .. 25642801

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCCTACCCATGATGACACCAACCCTCATTTTGTCAGACCCTTCCAACCACAACGTCCAGACCAATATCCCCAAACACCCCCTGTTGGTCCATTCCTGCAACAACCACAGCACCAAGGCCAGCACTCCGGCCCTGTGAGTCTCGGTCCCAGTTGGACTGAACCACCACCAGATGTTAAGCCAGCCCGTCGTCACAGGCCAAAGCATTCAGGCAGGCATTCTCGGCCACTTGGTCCATTGGTGTCATTCCATCCACACTTTCAAGACCAACATCCTCATCCACAGCCAAACCATTCAGGCCAGCAAACCCAGCCGCTAGTCCCCCCGGTGCCCTTTGCAAACCAAGATAATGAAGACCCACAACCTCCGGCAAAGCGTCAAAGCCAGCAAACCCTGCCACCGTCAAGCCATGATCATGAAGACCAACTGCATCCTCTGCCACATGGTACACAAGGACAGCCACAACATGGCCAGCGTCCCCACCCGCATGGCTTGCTCAGGCCACATACTCAACAAACCAACCTCTTTCAATGGTCATTAGCCATCTTCTGTGCAATTTTTTGGGTTATCATAATAATAGGAGGCCTAGTTGTTCTCATAGTCTATCTTATTTTTCGCCCCCGGACACCGAAATTCGATGTCTCCACTGCCACCCTCAATGCAGCCTACCTTGACATGGGCTATCTGCTCAATGCTGACCTTACTGTGCTAGCGAACTTCACCAATCCAAACAAGAAGGTGAGCGTGGACTTTAGCTCCTTGATCATTGATCTTTATTATGGAAATACCCTAATTGCTACCCAATACATAGAACCCTTTTCTGCACACAAGAGAGAGTCCATGTTTGCAAATGTTCATATGGTGGTTAGTCAGGTCCGTCTTGGATTGTTAGAGAGCCAAAGGCTTCAGAAGCAGATGGAGACCAACAGAGCCGTTTTTGAAGTCAAGGGATCTTTCAGAGCACGTGCTAATTTTGGAAATATCCTACGGTACTCTTATTGGTTACATGGTGACTGCAAAGTTGTGTTCACCGGACCTCCTGATGGGGTTCTGGTTAGTAGAAAATGCAAGACAAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

361

Amino Acids

40.79

Weight (kDa)

9.54

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13050 AT1G13050 AT1G13050 AT3G26350 AT3G26350
fragaria_vesca	FvH4_4g25410
malus_domestica	MD13G1103200.v1.1 MD16G1103400.v1.1
prunus_persica	Prupe.1G242600_v2.0.a1
pyrus_communis	pycom13g09020 pycom16g08820
rosa_chinensis	RchiOBHm_Chr4g0432721
rosa_multiflora	Rmu_co8522421.1_g000002 Rmu_sc0012180.1_g000011
rosa_roxburghii	Rroxscaffold_5G00374180
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316400 Rh4BG324400 Rh4CG339400 Rh4DG319700
rosa_wichuraiana	Rw4G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	2 cut(s)	314, 485
AclWI	GGATC	1 cut(s)	958
AcoI	YGGCCR	2 cut(s)	224, 469
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	890
AcvI	CACGTG	1 cut(s)	965
AfaI	GTAC	2 cut(s)	448, 992
AfiI	CCNNNNNNNGG	4 cut(s)	86, 467, 676, 1043
AgsI	TTSAA	3 cut(s)	263, 530, 941
AluBI	AGCT	1 cut(s)	756
AluI	AGCT	1 cut(s)	756
Alw21I	GWGCWC	1 cut(s)	964
Alw26I	GTCTC	3 cut(s)	146, 646, 914
AlwI	GGATC	1 cut(s)	958
AoxI	GGCC	8 cut(s)	118, 130, 197, 224, 298, 469, 500, 583
ApeKI	GCWGC	1 cut(s)	662
ApoI	RAATTY	1 cut(s)	632
AspS9I	GGNCC	6 cut(s)	89, 131, 146, 233, 874, 1034
AsuC2I	CCSGG	2 cut(s)	326, 622
AsuHPI	GGTGA	4 cut(s)	712, 751, 1021, 1022
AsuNHI	GCTAGC	1 cut(s)	709
AvaII	GGWCC	5 cut(s)	89, 146, 233, 874, 1034
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	965
BbsI	GAAGAC	2 cut(s)	360, 426
Bbv12I	GWGCWC	1 cut(s)	964
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	4 cut(s)	258, 551, 910, 1037
BceAI	ACGGC	1 cut(s)	917
BclI	TGATCA	2 cut(s)	412, 762
BcnI	CCSGG	2 cut(s)	326, 622
BcoDI	GTCTC	3 cut(s)	146, 646, 914
BfaI	CTAG	3 cut(s)	317, 587, 710
BisI	GCNGC	2 cut(s)	314, 663
BlsI	GCNGC	2 cut(s)	315, 664
Bme1390I	CCNGG	2 cut(s)	326, 622
Bme18I	GGWCC	5 cut(s)	89, 146, 233, 874, 1034
BmgT120I	GGNCC	6 cut(s)	89, 131, 146, 233, 874, 1034
BmiI	GGNNCC	2 cut(s)	148, 330
BmrFI	CCNGG	2 cut(s)	326, 622
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	360, 426
Bpu10I	CCTNAGC	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	326, 622
BsaAI	YACGTR	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	3 cut(s)	115, 324, 620
BsaWI	WCCGGW	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	6 cut(s)	573, 603, 740, 770, 1021, 1051
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 467, 676, 1043
Bse1I	ACTGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	115, 324, 620
BseGI	GGATG	4 cut(s)	250, 271, 277, 430
BseLI	CCNNNNNNNGG	4 cut(s)	86, 467, 676, 1043
BseMII	CTCAG	1 cut(s)	511
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	674
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	8 cut(s)	120, 132, 199, 226, 300, 471, 502, 585
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	964
BsiSI	CCGG	5 cut(s)	129, 326, 368, 622, 1032
BslFI	GGGAC	3 cut(s)	132, 305, 462
BslI	CCNNNNNNNGG	4 cut(s)	86, 467, 676, 1043
BsmAI	GTCTC	3 cut(s)	146, 646, 914
BsmFI	GGGAC	3 cut(s)	132, 305, 462
BsmI	GAATGC	2 cut(s)	205, 217
BsnI	GGCC	8 cut(s)	120, 132, 199, 226, 300, 471, 502, 585
Bso31I	GGTCTC	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	333, 964
Bsp143I	GATC	4 cut(s)	412, 762, 769, 950
BspACI	CCGC	2 cut(s)	314, 485
BspANI	GGCC	8 cut(s)	120, 132, 199, 226, 300, 471, 502, 585
BspCNI	CTCAG	1 cut(s)	510
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	148, 330
BspOI	GCTAGC	1 cut(s)	713
BspPI	GGATC	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	914
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	115, 324, 620
BssMI	GATC	4 cut(s)	412, 762, 769, 950
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	402, 706, 990
BstAPI	GCANNNNNTGC	3 cut(s)	394, 436, 493
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	8 cut(s)	122, 183, 215, 302, 386, 473, 494, 711
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	250, 271, 277, 430
BstKTI	GATC	4 cut(s)	415, 765, 772, 953
BstMAI	GTCTC	3 cut(s)	146, 646, 914
BstMBI	GATC	4 cut(s)	412, 762, 769, 950
BstMWI	GCNNNNNNNGC	6 cut(s)	223, 310, 394, 436, 493, 910
BstSCI	CCNGG	2 cut(s)	324, 620
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	674
BstV2I	GAAGAC	2 cut(s)	360, 426
BstX2I	RGATCY	1 cut(s)	950
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	950
BsuRI	GGCC	8 cut(s)	120, 132, 199, 226, 300, 471, 502, 585
BtsCI	GGATG	4 cut(s)	250, 271, 277, 430
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	8 cut(s)	122, 183, 215, 302, 386, 473, 494, 711
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	6 cut(s)	89, 131, 146, 233, 874, 1034
CseI	GACGC	2 cut(s)	365, 464
Csp6I	GTAC	2 cut(s)	447, 991
CviAII	CATG	9 cut(s)	11, 410, 416, 443, 467, 488, 676, 841, 1007
CviQI	GTAC	2 cut(s)	447, 991
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	414, 764, 771, 952
DpnII	GATC	4 cut(s)	412, 762, 769, 950
EaeI	YGGCCR	2 cut(s)	224, 469
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	914
Eco47I	GGWCC	5 cut(s)	89, 146, 233, 874, 1034
Eco57I	CTGAAG	1 cut(s)	890
Eco72I	CACGTG	1 cut(s)	965
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	9 cut(s)	14, 413, 419, 446, 470, 491, 679, 844, 1010
FaqI	GGGAC	3 cut(s)	132, 305, 462
FatI	CATG	9 cut(s)	10, 409, 415, 442, 466, 487, 675, 840, 1006
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	858
FbaI	TGATCA	2 cut(s)	412, 762
Fnu4HI	GCNGC	2 cut(s)	314, 663
FokI	GGATG	4 cut(s)	237, 258, 264, 417
Fsp4HI	GCNGC	2 cut(s)	314, 663
FspBI	CTAG	3 cut(s)	317, 587, 710
GluI	GCNGC	2 cut(s)	314, 663
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	8 cut(s)	120, 132, 199, 226, 300, 471, 502, 585
HapII	CCGG	5 cut(s)	129, 326, 368, 622, 1032
HgaI	GACGC	2 cut(s)	365, 464
Hin1II	CATG	9 cut(s)	14, 413, 419, 446, 470, 491, 679, 844, 1010
HinfI	GANTC	2 cut(s)	139, 836
HpaII	CCGG	5 cut(s)	129, 326, 368, 622, 1032
HphI	GGTGA	4 cut(s)	712, 751, 1021, 1022
Hpy166II	GTNNAC	3 cut(s)	449, 748, 1029
Hpy188I	TCNGA	3 cut(s)	38, 909, 959
Hpy188III	TCNNGA	4 cut(s)	59, 263, 416, 1040
Hpy8I	GTNNAC	3 cut(s)	449, 748, 1029
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	52, 730
HpyCH4III	ACNGT	3 cut(s)	402, 706, 990
HpyCH4IV	ACGT	2 cut(s)	55, 964
HpyCH4V	TGCA	9 cut(s)	100, 338, 430, 554, 662, 824, 848, 1017, 1068
HpyF10VI	GCNNNNNNNGC	6 cut(s)	223, 310, 394, 436, 493, 910
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	2 cut(s)	55, 964
Hsp92II	CATG	9 cut(s)	14, 413, 419, 446, 470, 491, 679, 844, 1010
Ksp22I	TGATCA	2 cut(s)	412, 762
Kzo9I	GATC	4 cut(s)	412, 762, 769, 950
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	317, 587, 710
MaeII	ACGT	2 cut(s)	55, 964
MaeIII	GTNAC	3 cut(s)	191, 1002, 1010
MalI	GATC	4 cut(s)	414, 764, 771, 952
MboI	GATC	4 cut(s)	412, 762, 769, 950
MboII	GAAGA	3 cut(s)	365, 431, 538
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	2 cut(s)	333, 964
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	4 cut(s)	555, 632, 792, 970
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	148, 845
MmeI	TCCRAC	2 cut(s)	70, 134
MnlI	CCTC	8 cut(s)	36, 285, 375, 444, 533, 575, 665, 1047
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	414, 486
Msp20I	TGGCCA	1 cut(s)	471
MspI	CCGG	5 cut(s)	129, 326, 368, 622, 1032
MspR9I	CCNGG	2 cut(s)	326, 622
Mva1269I	GAATGC	2 cut(s)	205, 217
MwoI	GCNNNNNNNGC	6 cut(s)	223, 310, 394, 436, 493, 910
NciI	CCSGG	2 cut(s)	326, 622
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	4 cut(s)	412, 762, 769, 950
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	9 cut(s)	14, 413, 419, 446, 470, 491, 679, 844, 1010
NlaIV	GGNNCC	2 cut(s)	148, 330
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	191, 1010
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	585
PctI	GAATGC	2 cut(s)	205, 217
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	315, 664
PleI	GAGTC	2 cut(s)	147, 844
PmaCI	CACGTG	1 cut(s)	965
PmlI	CACGTG	1 cut(s)	965
PpsI	GAGTC	2 cut(s)	147, 844
Ppu21I	YACGTR	1 cut(s)	965
PspCI	CACGTG	1 cut(s)	965
PspFI	CCCAGC	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	148, 330
PspPI	GGNCC	6 cut(s)	89, 131, 146, 233, 874, 1034
PsuI	RGATCY	1 cut(s)	950
RsaI	GTAC	2 cut(s)	448, 992
RsaNI	GTAC	2 cut(s)	447, 991
RseI	CAYNNNNRTG	2 cut(s)	414, 486
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	314, 663
Sau3AI	GATC	4 cut(s)	412, 762, 769, 950
Sau96I	GGNCC	6 cut(s)	89, 131, 146, 233, 874, 1034
SchI	GAGTC	2 cut(s)	148, 845
ScrFI	CCNGG	2 cut(s)	326, 622
SduI	GDGCHC	2 cut(s)	333, 964
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	5 cut(s)	89, 146, 233, 874, 1034
SmiMI	CAYNNNNRTG	2 cut(s)	414, 486
Sse9I	AATT	4 cut(s)	555, 632, 792, 970
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	2 cut(s)	314, 485
SspMI	CTAG	3 cut(s)	317, 587, 710
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	324, 620
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	402, 706, 990
TaiI	ACGT	2 cut(s)	58, 967
TaqI	TCGA	1 cut(s)	636
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	4 cut(s)	555, 632, 792, 970
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	191, 1010
TseI	GCWGC	1 cut(s)	662
Tsp45I	GTSAC	2 cut(s)	191, 1010
TspDTI	ATGAA	3 cut(s)	366, 432, 845
TspGWI	ACGGA	1 cut(s)	866
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	5 cut(s)	89, 146, 233, 874, 1034
XapI	RAATTY	1 cut(s)	632
XspI	CTAG	3 cut(s)	317, 587, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.