Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009904

Physical Location & Seq

Genomic Coordinates Reverse (-)

27194071 .. 27194523

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTCGACATTCCCTCTGCCACACTAAACGCAGCCTATCTCGACATGGGGTATCTCCTCAATGCCGACCTTACCGTGCTAGTAAACTTCACCAACCCCAACAAGAAGGTGAGCGTCTACTTCAGTCCCATGTACATTGATGCTTACTATGGTGGCACCCTCATTGCTACCACCTACATTGAACCTTTCACCGCACGCAAGCATCAATCCATGTTTGCAAATGTTCACATGGTGGCTAGCCAGGTTCGTCTCGGATTGCTCGAAAGCCAAAGGCTGAAGAAGCAGCTGGAGAGCAGCAGAGCCGGCTTCGAAATCAAAGGCTACTTCAGAGCACGAGCTAATTTCGGAAGCCTGTTGCGATACTCGTATAAATTACATGGTGACTGCACCGTTGTGCTCTCGAGACCTCCTGGTGGGGTTATGGTTGGTAGGAAATGCAAGACAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

151

Amino Acids

16.89

Weight (kDa)

9.79

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13050 AT1G13050 AT1G13050 AT3G26350 AT3G26350
fragaria_vesca	FvH4_4g25410
malus_domestica	MD13G1103200.v1.1 MD16G1103400.v1.1
prunus_persica	Prupe.1G242600_v2.0.a1
pyrus_communis	pycom13g09020 pycom16g08820
rosa_chinensis	RchiOBHm_Chr4g0432721
rosa_multiflora	Rmu_co8522421.1_g000002 Rmu_sc0012180.1_g000011
rosa_roxburghii	Rroxscaffold_5G00374180
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316400 Rh4BG324400 Rh4CG339400 Rh4DG319700
rosa_wichuraiana	Rw4G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	192
AcuI	CTGAAG	3 cut(s)	106, 296, 310
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	240, 409
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	286, 338
AluI	AGCT	2 cut(s)	286, 338
Alw21I	GWGCWC	2 cut(s)	334, 399
Alw26I	GTCTC	2 cut(s)	254, 397
Ama87I	CYCGRG	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	32, 283, 294
AsuHPI	GGTGA	4 cut(s)	82, 121, 181, 392
AsuII	TTCGAA	1 cut(s)	309
AsuNHI	GCTAGC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	334, 399
BbvI	GCAGC	3 cut(s)	44, 295, 306
BciT130I	CCWGG	2 cut(s)	242, 411
BcoDI	GTCTC	2 cut(s)	254, 397
BfaI	CTAG	2 cut(s)	80, 237
BisI	GCNGC	3 cut(s)	33, 284, 295
BlsI	GCNGC	3 cut(s)	34, 285, 296
Bme1390I	CCNGG	2 cut(s)	242, 411
BmeT110I	CYCGRG	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	242, 411
BmsI	GCATC	2 cut(s)	130, 211
BmtI	GCTAGC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	242, 411
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	44, 295, 306
BsgI	GTGCAG	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	334, 399
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	254, 397
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	397
BsoBI	CYCGRG	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	334, 399
Bsp1407I	TGTACA	1 cut(s)	132
BspACI	CCGC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	242, 411
Bst4CI	ACNGT	2 cut(s)	76, 391
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	196, 200, 238, 304
BstMAI	GTCTC	2 cut(s)	254, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 303
BstNI	CCWGG	2 cut(s)	242, 411
BstSCI	CCNGG	2 cut(s)	240, 409
BstV1I	GCAGC	3 cut(s)	44, 295, 306
Cac8I	GCNNGC	4 cut(s)	196, 200, 238, 304
Cfr10I	RCCGGY	1 cut(s)	302
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	5 cut(s)	46, 130, 211, 229, 377
CviQI	GTAC	1 cut(s)	133
DraIII	CACNNNGTG	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	397
Eco57I	CTGAAG	3 cut(s)	106, 296, 310
Eco88I	CYCGRG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	240, 409
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	5 cut(s)	49, 133, 214, 232, 380
FaiI	YATR	8 cut(s)	47, 131, 150, 212, 230, 369, 378, 422
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	5 cut(s)	45, 129, 210, 228, 376
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	33, 284, 295
Fsp4HI	GCNGC	3 cut(s)	33, 284, 295
FspBI	CTAG	2 cut(s)	80, 237
GluI	GCNGC	3 cut(s)	33, 284, 295
GsuI	CTGGAG	1 cut(s)	308
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	5 cut(s)	49, 133, 214, 232, 380
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	4 cut(s)	82, 121, 181, 392
Hpy166II	GTNNAC	3 cut(s)	85, 118, 226
Hpy188I	TCNGA	3 cut(s)	254, 329, 347
Hpy188III	TCNNGA	3 cut(s)	41, 400, 402
Hpy8I	GTNNAC	3 cut(s)	85, 118, 226
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	76, 391
HpyCH4V	TGCA	3 cut(s)	218, 387, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 303
Hsp92II	CATG	5 cut(s)	49, 133, 214, 232, 380
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	227, 254, 272, 316, 365, 396, 423
Lsp1109I	GCAGC	3 cut(s)	44, 295, 306
LweI	GCATC	2 cut(s)	130, 211
MaeI	CTAG	2 cut(s)	80, 237
MaeIII	GTNAC	1 cut(s)	380
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	334, 399
MluCI	AATT	2 cut(s)	340, 371
MnlI	CCTC	4 cut(s)	25, 68, 170, 417
MroNI	GCCGGC	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	242, 411
MvaI	CCWGG	2 cut(s)	242, 411
MwoI	GCNNNNNNNGC	2 cut(s)	280, 303
NaeI	GCCGGC	1 cut(s)	304
NgoMIV	GCCGGC	1 cut(s)	302
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	5 cut(s)	49, 133, 214, 232, 380
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	309
OliI	CACNNNNGTG	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	34, 285, 296
Psp6I	CCWGG	2 cut(s)	240, 409
PspGI	CCWGG	2 cut(s)	240, 409
PspN4I	GGNNCC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	392
SatI	GCNGC	3 cut(s)	33, 284, 295
ScrFI	CCNGG	2 cut(s)	242, 411
SduI	GDGCHC	2 cut(s)	334, 399
SetI	ASST	8 cut(s)	72, 111, 176, 187, 246, 288, 340, 409
SfaNI	GCATC	2 cut(s)	130, 211
Sfr274I	CTCGAG	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	340, 371
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	2 cut(s)	80, 237
StyD4I	CCNGG	2 cut(s)	240, 409
TaaI	ACNGT	2 cut(s)	76, 391
TaqI	TCGA	5 cut(s)	6, 42, 261, 309, 401
TasI	AATT	2 cut(s)	340, 371
TatI	WGTACW	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	32, 283, 294
Tsp45I	GTSAC	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	80, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.