AT3G26510

Octicosapeptide Phox Bem1p (PB1) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005433
Physical Location & Seq
Reverse (-)
9710326 .. 9712900
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26510.4

Sequence Viewer

Length: 591 bp
ATGGTTACATCTCCGACGAACTCAACAATCAAATTTCTCTGTAGCTATGGCGGCAAAATCCTACCTCGTTATCCCGACGGTAAACTCCGTTACAACGGTGGTCACACTCGCGTCCTCGCCGTTCCTCGCTCCGTCTCATTTTCCGAGTTAGCGTCGAAGATGGCGGAGATGTGCGGCGGCGTCGGCGGATCTATAACCGTAACGATCCGATGTCAGCTTCCGACGGAAGATCTCGACGCGCTCGTTTCAATTACTTCCGATGAAGATCTAGTGAATCTAATCGAAGAGTACGATCTCGTTTCCTCTTCATCTCCGATGAAAATCAGAGTCTTCTTAAATCCACCAAAATCCGCCGCCGGATCTAAAAAATCTCCTCCTCCGTTAGCGTTACCGTCATCAACCACCACGTCATCATCTTCCACAACTTCCTCTACTTCATCAAGTCCTAGATCTCCGTCTCTATCAAAACCACCGCTACCTCCGTCTCCACCGAGAATAACGACGGTTACGAAGAATCCGTGTTATGGTTGTTATGTTCACCGTAATTCCAGAAATATCTACCTTGTTCACAACGGCAATCACTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

196

Amino Acids

21.01

Weight (kDa)

9.4

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 26 - 113 6.3e-20 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 111, 239
AciI CCGC 8 cut(s) 51, 164, 174, 177, 186, 351, 354, 473
AclWI GGATC 3 cut(s) 196, 199, 367
AcsI RAATTY 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 1 cut(s) 249
AjiI CACGTC 1 cut(s) 408
AluBI AGCT 2 cut(s) 45, 217
AluI AGCT 2 cut(s) 45, 217
Alw26I GTCTC 3 cut(s) 139, 462, 489
AlwI GGATC 3 cut(s) 196, 199, 367
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 322
BccI CCATC 1 cut(s) 154
BceAI ACGGC 2 cut(s) 104, 589
BcoDI GTCTC 3 cut(s) 139, 462, 489
BfaI CTAG 2 cut(s) 269, 447
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 3 cut(s) 229, 265, 449
BisI GCNGC 4 cut(s) 52, 175, 178, 354
BlsI GCNGC 4 cut(s) 53, 176, 179, 355
BmgBI CACGTC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 322
BsaBI GATNNNNATC 2 cut(s) 264, 320
BsaHI GRCGYC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 587
Bse8I GATNNNNATC 2 cut(s) 264, 320
BseJI GATNNNNATC 2 cut(s) 264, 320
BseLI CCNNNNNNNGG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 363, 366
Bsh1236I CGCG 2 cut(s) 111, 239
BsiSI CCGG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 3 cut(s) 139, 462, 489
BsmBI CGTCTC 3 cut(s) 139, 462, 489
Bsp143I GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
BspACI CCGC 8 cut(s) 51, 164, 174, 177, 186, 351, 354, 473
BspFNI CGCG 2 cut(s) 111, 239
BspPI GGATC 3 cut(s) 196, 199, 367
BsrI ACTGG 1 cut(s) 587
BssMI GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 6 cut(s) 80, 98, 199, 393, 505, 542
Bst6I CTCTTC 2 cut(s) 279, 310
BstACI GRCGYC 1 cut(s) 180
BstFNI CGCG 2 cut(s) 111, 239
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 7 cut(s) 191, 207, 232, 268, 295, 362, 452
BstMAI GTCTC 3 cut(s) 139, 462, 489
BstMBI GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
BstMWI GCNNNNNNNGC 2 cut(s) 51, 183
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 2 cut(s) 111, 239
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 5 cut(s) 188, 229, 265, 359, 449
BstYI RGATCY 5 cut(s) 188, 229, 265, 359, 449
BtrI CACGTC 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 580
CfoI GCGC 1 cut(s) 241
CseI GACGC 4 cut(s) 100, 141, 169, 245
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 2 cut(s) 45, 217
CviKI_1 RGCY 2 cut(s) 45, 217
CviQI GTAC 1 cut(s) 289
DpnI GATC 7 cut(s) 190, 206, 231, 267, 294, 361, 451
DpnII GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
Eam1104I CTCTTC 2 cut(s) 279, 310
EarI CTCTTC 2 cut(s) 279, 310
EciI GGCGGA 3 cut(s) 179, 201, 340
Esp3I CGTCTC 3 cut(s) 139, 462, 489
FaiI YATR 4 cut(s) 48, 194, 525, 534
Fnu4HI GCNGC 4 cut(s) 52, 175, 178, 354
Fsp4HI GCNGC 4 cut(s) 52, 175, 178, 354
FspBI CTAG 2 cut(s) 269, 447
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 52, 175, 178, 354
HapII CCGG 1 cut(s) 357
HgaI GACGC 4 cut(s) 100, 141, 169, 245
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 3 cut(s) 274, 327, 514
HpaII CCGG 1 cut(s) 357
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 83, 538, 568
Hpy188I TCNGA 7 cut(s) 15, 145, 209, 222, 259, 315, 326
Hpy188III TCNNGA 3 cut(s) 74, 233, 549
Hpy8I GTNNAC 3 cut(s) 83, 538, 568
Hpy99I CGWCG 7 cut(s) 19, 80, 157, 185, 226, 239, 505
HpyCH4III ACNGT 6 cut(s) 80, 98, 199, 393, 505, 542
HpyCH4IV ACGT 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 183
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 3 cut(s) 370, 562, 568
MaeI CTAG 2 cut(s) 269, 447
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 6 cut(s) 4, 89, 101, 199, 387, 505
MalI GATC 7 cut(s) 190, 206, 231, 267, 294, 361, 451
MboI GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
MboII GAAGA 8 cut(s) 169, 239, 275, 296, 297, 322, 408, 523
MflI RGATCY 5 cut(s) 188, 229, 265, 359, 449
MluCI AATT 3 cut(s) 32, 249, 544
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 38, 245
MnlI CCTC 8 cut(s) 75, 125, 135, 313, 384, 387, 439, 489
MseI TTAA 1 cut(s) 335
MspI CCGG 1 cut(s) 357
MvnI CGCG 2 cut(s) 111, 239
MwoI GCNNNNNNNGC 2 cut(s) 51, 183
NdeII GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
NmuCI GTSAC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 288, 506, 515
PfeI GAWTC 2 cut(s) 274, 514
PkrI GCNGC 4 cut(s) 53, 176, 179, 355
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PsuI RGATCY 5 cut(s) 188, 229, 265, 359, 449
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 4 cut(s) 52, 175, 178, 354
Sau3AI GATC 7 cut(s) 188, 204, 229, 265, 292, 359, 449
SchI GAGTC 1 cut(s) 336
SetI ASST 6 cut(s) 47, 67, 219, 410, 481, 564
SfcI CTRYAG 1 cut(s) 40
Sse9I AATT 3 cut(s) 32, 249, 544
SsiI CCGC 8 cut(s) 51, 164, 174, 177, 186, 351, 354, 473
SspMI CTAG 2 cut(s) 269, 447
TaaI ACNGT 6 cut(s) 80, 98, 199, 393, 505, 542
TaiI ACGT 1 cut(s) 410
TaqI TCGA 3 cut(s) 155, 234, 282
TasI AATT 3 cut(s) 32, 249, 544
TauI GCSGC 4 cut(s) 54, 177, 180, 356
TfiI GAWTC 2 cut(s) 274, 514
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 276, 297, 332, 426
TspGWI ACGGA 7 cut(s) 77, 121, 239, 369, 444, 471, 507
TspRI CASTG 1 cut(s) 587
XapI RAATTY 1 cut(s) 32
XspI CTAG 2 cut(s) 269, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.