Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001762.1

Orthogroup ID

OG0005433

Physical Location & Seq

Genomic Coordinates Reverse (-)

142134 .. 142832

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001762.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggtcggaccatcagctgaccccaacaacactctcaaattcctctgcagctacggcggcaaaatcctcccccgttaccctgacggcaagctccgttatctcggcggcgaaacccgcgtccttgccgtccaccgttccatttccttctctgagctattgctgaagctgggagagctgtgtggcacaaccgtcggtctccgctgccaactgccaaccgaagacctcgacgcccttatctccgtcaagtgcgacgaggacctcgccaatctcatcgaggagtacgacacagctgcggcggccaccacgccgttgaagatcagagctttcctttcgctccccgccaacaaaattccgacgtctcctcagtcatcctcggcgtcctcctcgaaatcctcgtcttcaaatcacagtactacatatgcctccggatccactcccagattctcgatgccgttgccggcggaacgttgcctccgtcaagtttcgcatacggcgccatttcagcgagctccagcagcagctgggaaagctcctcactgtgctaattaccaagctcatggaaaccctagccgtctctacctcgttcacaacggcaaccactggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

202

Amino Acids

21.71

Weight (kDa)

8.93

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510
fragaria_vesca	FvH4_4g25570 FvH4_7g20480
malus_domestica	MD13G1101300.v1.1 MD16G1102100.v1.1
prunus_persica	Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1
pyrus_communis	pycom13g08840 pycom16g08640
rosa_chinensis	RchiOBHm_Chr4g0432981
rosa_laevigata	RLG00000006794
rosa_multiflora	Rmu_sc0001762.1_g000040
rosa_roxburghii	Rroxscaffold_5G00374380
rosa_rugosa	Rorug04G0264700 Rorug04G0264800 Rorug04G0264900
rosa_samantha	Rh4AG318500 Rh4BG326600 Rh4CG342000 Rh4DG321800
rosa_wichuraiana	Rw4G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	493
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	8 cut(s)	57, 105, 115, 199, 293, 296, 339, 461
AclI	AACGTT	1 cut(s)	466
AclWI	GGATC	2 cut(s)	423, 436
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	38, 348
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	4 cut(s)	228, 356, 377, 494
AfaI	GTAC	2 cut(s)	281, 412
AgsI	TTSAA	2 cut(s)	313, 402
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	3 cut(s)	200, 363, 578
AlwI	GGATC	2 cut(s)	423, 436
AlwNI	CAGNNNCTG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	425
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	5 cut(s)	48, 201, 290, 515, 518
ApoI	RAATTY	2 cut(s)	38, 348
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 380, 412
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	8, 256
AvaII	GGWCC	2 cut(s)	8, 256
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	225, 390
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	5 cut(s)	60, 188, 277, 527, 530
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	8 cut(s)	70, 100, 110, 292, 436, 507, 555, 607
BcgI	CGANNNNNNTGC	6 cut(s)	172, 206, 272, 306, 436, 470
BcoDI	GTCTC	3 cut(s)	200, 363, 578
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	9 cut(s)	49, 58, 106, 202, 291, 294, 297, 516, 519
BlsI	GCNGC	9 cut(s)	50, 59, 107, 203, 292, 295, 298, 517, 520
BmcAI	AGTACT	1 cut(s)	412
Bme18I	GGWCC	2 cut(s)	8, 256
BmgT120I	GGNCC	2 cut(s)	8, 256
BmiI	GGNNCC	2 cut(s)	430, 495
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	225, 390
BpmI	CTGGAG	1 cut(s)	495
BsaHI	GRCGYC	4 cut(s)	228, 356, 377, 494
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	141, 377
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	4 cut(s)	290, 351, 373, 522
BseXI	GCAGC	5 cut(s)	60, 188, 277, 527, 530
BseYI	CCCAGC	2 cut(s)	166, 521
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	426, 458
BsmAI	GTCTC	3 cut(s)	200, 363, 578
BsmBI	CGTCTC	2 cut(s)	363, 578
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	315, 428
BspACI	CCGC	8 cut(s)	57, 105, 115, 199, 293, 296, 339, 461
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	142, 376
BspEI	TCCGGA	1 cut(s)	425
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	430, 495
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	2 cut(s)	423, 436
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	315, 428
BssNI	GRCGYC	4 cut(s)	228, 356, 377, 494
Bst4CI	ACNGT	4 cut(s)	134, 190, 410, 539
BstACI	GRCGYC	4 cut(s)	228, 356, 377, 494
BstC8I	GCNNGC	3 cut(s)	89, 459, 507
BstDEI	CTNAG	2 cut(s)	150, 363
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	2 cut(s)	318, 431
BstMAI	GTCTC	3 cut(s)	200, 363, 578
BstMBI	GATC	2 cut(s)	315, 428
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 57, 114, 172, 296, 493, 502, 515, 527
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	5 cut(s)	60, 188, 277, 527, 530
BstV2I	GAAGAC	2 cut(s)	225, 390
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	535, 598
Cac8I	GCNNGC	3 cut(s)	89, 459, 507
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	8, 256
CseI	GACGC	3 cut(s)	106, 236, 366
Csp6I	GTAC	2 cut(s)	280, 411
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	2 cut(s)	280, 411
DdeI	CTNAG	2 cut(s)	150, 363
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	2 cut(s)	317, 430
DpnII	GATC	2 cut(s)	315, 428
EaeI	YGGCCR	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	8, 256
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
Esp3I	CGTCTC	2 cut(s)	363, 578
FaeI	CATG	1 cut(s)	560
FaiI	YATR	4 cut(s)	418, 420, 489, 558
FatI	CATG	1 cut(s)	556
FauI	CCCGC	2 cut(s)	122, 346
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	9 cut(s)	49, 58, 106, 202, 291, 294, 297, 516, 519
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	9 cut(s)	49, 58, 106, 202, 291, 294, 297, 516, 519
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	9 cut(s)	49, 58, 106, 202, 291, 294, 297, 516, 519
GsaI	CCCAGC	2 cut(s)	170, 525
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	426, 458
HgaI	GACGC	3 cut(s)	106, 236, 366
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	4 cut(s)	228, 356, 377, 494
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	426, 458
Hpy166II	GTNNAC	2 cut(s)	130, 586
Hpy188I	TCNGA	4 cut(s)	8, 151, 320, 354
Hpy188III	TCNNGA	2 cut(s)	426, 445
Hpy8I	GTNNAC	2 cut(s)	130, 586
Hpy99I	CGWCG	4 cut(s)	194, 230, 254, 358
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	4 cut(s)	134, 190, 410, 539
HpyCH4IV	ACGT	2 cut(s)	356, 466
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 57, 114, 172, 296, 493, 502, 515, 527
HpyF3I	CTNAG	2 cut(s)	150, 363
HpySE526I	ACGT	2 cut(s)	356, 466
Hsp92I	GRCGYC	4 cut(s)	228, 356, 377, 494
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	1 cut(s)	494
KasI	GGCGCC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	315, 428
LmnI	GCTCC	4 cut(s)	96, 339, 514, 535
LpnPI	CCDG	8 cut(s)	93, 152, 439, 451, 471, 507, 525, 586
Lsp1109I	GCAGC	5 cut(s)	60, 188, 277, 527, 530
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	2 cut(s)	356, 466
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	317, 430
MboI	GATC	2 cut(s)	315, 428
MboII	GAAGA	3 cut(s)	230, 325, 390
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	38, 348, 544
Mly113I	GGCGCC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	457
MspA1I	CMGCKG	4 cut(s)	17, 201, 290, 521
MspI	CCGG	2 cut(s)	426, 458
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	9 cut(s)	54, 57, 114, 172, 296, 493, 502, 515, 527
NaeI	GCCGGC	1 cut(s)	459
NarI	GGCGCC	1 cut(s)	494
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	315, 428
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	430, 495
NmeAIII	GCCGAG	2 cut(s)	81, 353
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 392, 472
PdiI	GCCGGC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	9 cut(s)	50, 59, 107, 203, 292, 295, 298, 517, 520
PluTI	GGCGCC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	511
Psp1406I	AACGTT	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	256
PspFI	CCCAGC	2 cut(s)	166, 521
PspN4I	GGNNCC	2 cut(s)	430, 495
PspPI	GGNCC	2 cut(s)	8, 256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	428
PvuII	CAGCTG	3 cut(s)	17, 290, 521
RsaI	GTAC	2 cut(s)	281, 412
RsaNI	GTAC	2 cut(s)	280, 411
SacI	GAGCTC	1 cut(s)	511
SatI	GCNGC	9 cut(s)	49, 58, 106, 202, 291, 294, 297, 516, 519
Sau3AI	GATC	2 cut(s)	315, 428
Sau96I	GGNCC	2 cut(s)	8, 256
ScaI	AGTACT	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	495
SinI	GGWCC	2 cut(s)	8, 256
Sse9I	AATT	3 cut(s)	38, 348, 544
SsiI	CCGC	8 cut(s)	57, 105, 115, 199, 293, 296, 339, 461
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	511
TaaI	ACNGT	4 cut(s)	134, 190, 410, 539
TaiI	ACGT	2 cut(s)	359, 469
TaqI	TCGA	4 cut(s)	225, 273, 386, 446
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	38, 348, 544
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	4 cut(s)	60, 108, 296, 299
TfiI	GAWTC	1 cut(s)	441
TscAI	CASTG	2 cut(s)	542, 605
TseI	GCWGC	5 cut(s)	48, 201, 290, 515, 518
TspGWI	ACGGA	3 cut(s)	83, 229, 464
TspRI	CASTG	2 cut(s)	542, 605
VpaK11BI	GGWCC	2 cut(s)	8, 256
XapI	RAATTY	2 cut(s)	38, 348
XspI	CTAG	1 cut(s)	567
ZraI	GACGTC	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.