RLG00000006794

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005433
Physical Location & Seq
Reverse (-)
10640813 .. 10641511
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006794

Sequence Viewer

Length: 609 bp
ATGGTCGGACCATCAGCTGACCACACCAACACTCTCAAATTCCTCTGCAGCTACGGCGGCAAAATCCTCCCCCGTTACCCTGACTGCAAGCTCCGTTATCTCGGGGGCGAAACCCGCGTTCTTGCCGTCCACCGTTCCATTTCCTTCTCTGAGCTATTGCTGAAGCTGGGAGAGCTGTGTGGCACAACCGTCGGTCTCCGTTGCCAACTGCCAACCGAAGACCTCGACGCCCTTATCTCCGTCAAGTGCGACGAGGACCTCGCCAATCTCATCGAGGAGTACAACACAGCTGCGGCTGCCGCCACGCCGTTGAAGATCAGAGCCTTCCTTTCGCTCCCCGCCAACAAAATTCCGACGCCTCCTCCGTCATCCTCGGCGTCCTCCTCGAAATCCTCATCTTCAAATCACAGTACTACATGTGCCTCCGGATCCACTCCCAGATTCTCGATGCCGTTGCCTGCGGAGCGTTGCCTTCGTCAAGTTTCGCATACGGCGCCGTTTCAGCGAGCTCCAGCAGCAGCTGGGAAAGCTCCTCACTGTGCTAATTACCAAGCTCATGGAAACCCTAGCCATCTCTACCTCGTCCACAACGGCAACCACTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

203

Amino Acids

21.65

Weight (kDa)

8.81

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 28 - 97 1.2e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 493
AccII CGCG 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 425
AciI CCGC 6 cut(s) 57, 115, 293, 300, 339, 461
AclWI GGATC 2 cut(s) 423, 436
AcsI RAATTY 2 cut(s) 38, 348
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 4 cut(s) 228, 356, 377, 494
AfaI GTAC 2 cut(s) 281, 412
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 313, 402
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 2 cut(s) 423, 436
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 425
ApeKI GCWGC 5 cut(s) 48, 290, 296, 515, 518
ApoI RAATTY 2 cut(s) 38, 348
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 8, 256
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 8, 256
BamHI GGATCC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 5 cut(s) 60, 277, 283, 527, 530
BccI CCATC 2 cut(s) 19, 579
BceAI ACGGC 7 cut(s) 70, 110, 292, 436, 481, 507, 607
BcgI CGANNNNNNTGC 4 cut(s) 172, 206, 436, 470
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 8 cut(s) 49, 58, 291, 294, 297, 300, 516, 519
BlsI GCNGC 8 cut(s) 50, 59, 292, 295, 298, 301, 517, 520
BmcAI AGTACT 1 cut(s) 412
Bme18I GGWCC 2 cut(s) 8, 256
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 8, 256
BmiI GGNNCC 2 cut(s) 430, 495
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 495
BsaHI GRCGYC 4 cut(s) 228, 356, 377, 494
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse1I ACTGG 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 4 cut(s) 290, 351, 373, 522
BseXI GCAGC 5 cut(s) 60, 277, 283, 527, 530
BseYI CCCAGC 2 cut(s) 166, 521
Bsh1236I CGCG 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 511
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 2 cut(s) 315, 428
BspACI CCGC 6 cut(s) 57, 115, 293, 300, 339, 461
BspCNI CTCAG 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 430, 495
BspMAI CTGCAG 1 cut(s) 50
BspPI GGATC 2 cut(s) 423, 436
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 315, 428
BssNI GRCGYC 4 cut(s) 228, 356, 377, 494
Bst4CI ACNGT 4 cut(s) 134, 190, 410, 539
BstACI GRCGYC 4 cut(s) 228, 356, 377, 494
BstC8I GCNNGC 3 cut(s) 89, 459, 507
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 2 cut(s) 318, 431
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 315, 428
BstNSI RCATGY 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 46
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 5 cut(s) 60, 277, 283, 527, 530
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 1 cut(s) 428
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 535, 598
Cac8I GCNNGC 3 cut(s) 89, 459, 507
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 8, 256
CseI GACGC 3 cut(s) 236, 364, 366
Csp6I GTAC 2 cut(s) 280, 411
CviAII CATG 2 cut(s) 417, 557
CviQI GTAC 2 cut(s) 280, 411
DdeI CTNAG 1 cut(s) 150
DinI GGCGCC 1 cut(s) 495
DpnI GATC 2 cut(s) 317, 430
DpnII GATC 2 cut(s) 315, 428
Ecl136II GAGCTC 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 8, 256
Eco53kI GAGCTC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 511
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 2 cut(s) 420, 560
FaiI YATR 3 cut(s) 418, 489, 558
FatI CATG 2 cut(s) 416, 556
FauI CCCGC 2 cut(s) 122, 346
Fnu4HI GCNGC 8 cut(s) 49, 58, 291, 294, 297, 300, 516, 519
FokI GGATG 1 cut(s) 355
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 8 cut(s) 49, 58, 291, 294, 297, 300, 516, 519
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 495
GluI GCNGC 8 cut(s) 49, 58, 291, 294, 297, 300, 516, 519
GsaI CCCAGC 2 cut(s) 170, 525
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 497
HapII CCGG 1 cut(s) 426
HgaI GACGC 3 cut(s) 236, 364, 366
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 4 cut(s) 228, 356, 377, 494
Hin1II CATG 2 cut(s) 420, 560
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 1 cut(s) 441
HpaII CCGG 1 cut(s) 426
Hpy166II GTNNAC 2 cut(s) 130, 586
Hpy188I TCNGA 4 cut(s) 8, 151, 320, 354
Hpy188III TCNNGA 2 cut(s) 426, 445
Hpy8I GTNNAC 2 cut(s) 130, 586
Hpy99I CGWCG 4 cut(s) 194, 230, 254, 358
HpyAV CCTTC 3 cut(s) 154, 334, 482
HpyCH4III ACNGT 4 cut(s) 134, 190, 410, 539
HpyCH4V TGCA 2 cut(s) 48, 87
HpyF3I CTNAG 1 cut(s) 150
Hsp92I GRCGYC 4 cut(s) 228, 356, 377, 494
Hsp92II CATG 2 cut(s) 420, 560
HspAI GCGC 1 cut(s) 494
KasI GGCGCC 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 425
Kzo9I GATC 2 cut(s) 315, 428
LmnI GCTCC 5 cut(s) 96, 339, 463, 514, 535
LpnPI CCDG 8 cut(s) 93, 152, 439, 451, 471, 507, 525, 586
Lsp1109I GCAGC 5 cut(s) 60, 277, 283, 527, 530
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 317, 430
MboI GATC 2 cut(s) 315, 428
MboII GAAGA 3 cut(s) 230, 325, 390
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 3 cut(s) 38, 348, 544
Mly113I GGCGCC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 377
MroI TCCGGA 1 cut(s) 425
MspA1I CMGCKG 3 cut(s) 17, 290, 521
MspI CCGG 1 cut(s) 426
MvnI CGCG 1 cut(s) 117
NarI GGCGCC 1 cut(s) 494
NdeII GATC 2 cut(s) 315, 428
NlaIII CATG 2 cut(s) 420, 560
NlaIV GGNNCC 2 cut(s) 430, 495
NmeAIII GCCGAG 1 cut(s) 353
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 8 cut(s) 50, 59, 292, 295, 298, 301, 517, 520
PluTI GGCGCC 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 256
PscI ACATGT 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 256
PspFI CCCAGC 2 cut(s) 166, 521
PspN4I GGNNCC 2 cut(s) 430, 495
PspPI GGNCC 2 cut(s) 8, 256
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 3 cut(s) 17, 290, 521
RsaI GTAC 2 cut(s) 281, 412
RsaNI GTAC 2 cut(s) 280, 411
SacI GAGCTC 1 cut(s) 511
SatI GCNGC 8 cut(s) 49, 58, 291, 294, 297, 300, 516, 519
Sau3AI GATC 2 cut(s) 315, 428
Sau96I GGNCC 2 cut(s) 8, 256
ScaI AGTACT 1 cut(s) 412
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 46
SfoI GGCGCC 1 cut(s) 495
SinI GGWCC 2 cut(s) 8, 256
Sse9I AATT 3 cut(s) 38, 348, 544
SsiI CCGC 6 cut(s) 57, 115, 293, 300, 339, 461
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 511
TaaI ACNGT 4 cut(s) 134, 190, 410, 539
TaqI TCGA 4 cut(s) 225, 273, 386, 446
TaqII GACCGA 1 cut(s) 182
TasI AATT 3 cut(s) 38, 348, 544
TatI WGTACW 2 cut(s) 279, 410
TauI GCSGC 3 cut(s) 60, 296, 302
TfiI GAWTC 1 cut(s) 441
TscAI CASTG 2 cut(s) 542, 605
TseI GCWGC 5 cut(s) 48, 290, 296, 515, 518
TspGWI ACGGA 4 cut(s) 83, 188, 229, 354
TspRI CASTG 2 cut(s) 542, 605
VpaK11BI GGWCC 2 cut(s) 8, 256
XapI RAATTY 2 cut(s) 38, 348
XceI RCATGY 1 cut(s) 420
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.