Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005433

Physical Location & Seq

Genomic Coordinates Forward (+)

43662884 .. 43667925

Gene Structure 5042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCCAGCGATTCAAATCTGTCGAAGCTTCACCGTCTGATCGACGATTTTCTCGGTCCTTACCCAGAACCAGATGTTGTTTGGGTGACCAAAGAGAGAGAAATTTGGGTTAGTCTCTCTCAGGTACTTCGGCAAGTAAAGCTTTGTATTGGAGAAGTTGATTCTGATTATGATAATGTATGTGGATTAAAGGGTCCAATACCCAGATACCCAAGAGCCTGGAAAGCCAATAAGGAGATTGGGACCATTTCGAAATCCCTCAAGCTTGTTGAGTGTATTAAGGGTCTGTCAAATGTGAAAGAGGAGGTTTATGGGGCCCTTGATTCTTTCATTGTTTGGGAATTGGAATTCCCTTTGATTACAGTGACATTATTCTGCTACAGACGGATGTTTTCAATACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAAGGCCAGATTACATTTTCCTCTGCCATGTCTTGAAGTTGGATATCTTATTGCACTACCAGGACGGATACCAATTGCACCTCCTAGTGATTGGAAACAATCAAAAATTATTTTGAACCATGAAGAGCTTCAACAGCTCTATCAGAAAGGAATTGGGGTGACCATTGTTTGTCCTGGTCCAATAGAAACATCAAATGGTACAGGTGCAGCAAGCTCAGAGAATAAAGCTTCTTCTGAGAAGCGTGTGTCATCAGAAAGGTGTGCAGAGTTGACAATAATTGCTGCCACCCATGGTCTAAAGGAAGTTTGGATATCATACCAGATTATCTGCTGCTTTGACAACTATGGTGTTCCTCAGGGACAGTTGTTTGAATTTCAAGTCCATCTGAATAGCAATAGAGTATTGATGGGGAACTTGGTTTTATTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

289

Amino Acids

32.44

Weight (kDa)

6.53

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510 AT3G26510
fragaria_vesca	FvH4_4g25570 FvH4_7g20480
malus_domestica	MD13G1101300.v1.1 MD16G1102100.v1.1
prunus_persica	Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1 Prupe.1G244500_v2.0.a1
pyrus_communis	pycom13g08840 pycom16g08640
rosa_chinensis	RchiOBHm_Chr4g0432981
rosa_laevigata	RLG00000006794
rosa_multiflora	Rmu_sc0001762.1_g000040
rosa_roxburghii	Rroxscaffold_5G00374380
rosa_rugosa	Rorug04G0264700 Rorug04G0264800 Rorug04G0264900
rosa_samantha	Rh4AG318500 Rh4BG326600 Rh4CG342000 Rh4DG321800
rosa_wichuraiana	Rw4G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	102, 347, 809
AfaI	GTAC	2 cut(s)	126, 637
AgsI	TTSAA	7 cut(s)	15, 396, 473, 553, 569, 809, 815
AjnI	CCWGG	3 cut(s)	218, 496, 610
AluBI	AGCT	8 cut(s)	28, 142, 265, 411, 565, 574, 651, 665
AluI	AGCT	8 cut(s)	28, 142, 265, 411, 565, 574, 651, 665
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	315, 441
ApaI	GGGCCC	1 cut(s)	319
ApeKI	GCWGC	4 cut(s)	417, 644, 719, 768
ApoI	RAATTY	3 cut(s)	102, 347, 809
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	6 cut(s)	56, 194, 243, 315, 316, 614
AsuHPI	GGTGA	3 cut(s)	23, 97, 607
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	4 cut(s)	56, 194, 243, 614
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	319, 413
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	429, 656, 706, 755
BccI	CCATC	2 cut(s)	828, 838
BciT130I	CCWGG	3 cut(s)	220, 498, 612
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	522, 868
BfmI	CTRYAG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	4 cut(s)	418, 645, 720, 769
BlsI	GCNGC	4 cut(s)	419, 646, 721, 770
Bme1390I	CCNGG	3 cut(s)	220, 498, 612
Bme18I	GGWCC	4 cut(s)	56, 194, 243, 614
BmgT120I	GGNCC	6 cut(s)	56, 194, 243, 315, 316, 614
BmiI	GGNNCC	4 cut(s)	195, 244, 316, 317
BmrFI	CCNGG	3 cut(s)	220, 498, 612
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	429
Bse21I	CCTNAGG	1 cut(s)	792
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	220, 498, 612
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	15
BseMII	CTCAG	5 cut(s)	134, 398, 663, 666, 806
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	4 cut(s)	429, 656, 706, 755
BsgI	GTGCAG	2 cut(s)	663, 720
BshFI	GGCC	2 cut(s)	317, 443
BsiHKAI	GWGCWC	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	256, 810
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	256, 810
BsnI	GGCC	2 cut(s)	317, 443
Bsp119I	TTCGAA	1 cut(s)	251
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	319, 413
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	727
BspANI	GGCC	2 cut(s)	317, 443
BspCNI	CTCAG	5 cut(s)	133, 399, 664, 665, 805
BspLI	GGNNCC	4 cut(s)	195, 244, 316, 317
BspQI	GCTCTTC	1 cut(s)	555
BspT104I	TTCGAA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	3 cut(s)	220, 498, 612
Bst4CI	ACNGT	3 cut(s)	35, 364, 801
Bst6I	CTCTTC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	5 cut(s)	120, 407, 652, 672, 792
BstDSI	CCRYGG	1 cut(s)	727
BstEII	GGTNACC	2 cut(s)	85, 595
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 224, 417, 571
BstNI	CCWGG	3 cut(s)	220, 498, 612
BstPI	GGTNACC	2 cut(s)	85, 595
BstSCI	CCNGG	3 cut(s)	218, 496, 610
BstSFI	CTRYAG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	4 cut(s)	429, 656, 706, 755
BstXI	CCANNNNNNTGG	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	317, 443
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	369, 404
Cac8I	GCNNGC	1 cut(s)	649
Cfr13I	GGNCC	6 cut(s)	56, 194, 243, 315, 316, 614
Csp6I	GTAC	2 cut(s)	125, 636
CviAII	CATG	3 cut(s)	465, 557, 728
CviQI	GTAC	2 cut(s)	125, 636
DdeI	CTNAG	5 cut(s)	120, 407, 652, 672, 792
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	727
Eco24I	GRGCYC	2 cut(s)	319, 413
Eco32I	GATATC	2 cut(s)	482, 750
Eco47I	GGWCC	4 cut(s)	56, 194, 243, 614
Eco53kI	GAGCTC	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	792
Eco91I	GGTNACC	2 cut(s)	85, 595
EcoICRI	GAGCTC	1 cut(s)	411
EcoO109I	RGGNCCY	2 cut(s)	315, 316
EcoO65I	GGTNACC	2 cut(s)	85, 595
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	3 cut(s)	218, 496, 610
EcoRV	GATATC	2 cut(s)	482, 750
EcoT14I	CCWWGG	1 cut(s)	727
EcoT38I	GRGCYC	2 cut(s)	319, 413
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	3 cut(s)	468, 560, 731
FaiI	YATR	8 cut(s)	171, 181, 312, 466, 558, 729, 754, 783
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	2 cut(s)	256, 810
FatI	CATG	3 cut(s)	464, 556, 727
Fnu4HI	GCNGC	4 cut(s)	418, 645, 720, 769
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	2 cut(s)	319, 413
Fsp4HI	GCNGC	4 cut(s)	418, 645, 720, 769
FspBI	CTAG	2 cut(s)	522, 868
GluI	GCNGC	4 cut(s)	418, 645, 720, 769
HaeIII	GGCC	2 cut(s)	317, 443
Hin1II	CATG	3 cut(s)	468, 560, 731
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	4 cut(s)	26, 140, 263, 663
HinfI	GANTC	3 cut(s)	11, 161, 323
HphI	GGTGA	3 cut(s)	23, 97, 607
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	7 cut(s)	39, 166, 582, 655, 673, 691, 825
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	1 cut(s)	708
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	35, 364, 801
HpyCH4V	TGCA	5 cut(s)	417, 491, 515, 644, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 224, 417, 571
HpyF3I	CTNAG	5 cut(s)	120, 407, 652, 672, 792
Hsp92II	CATG	3 cut(s)	468, 560, 731
Kzo9I	GATC	1 cut(s)	39
LguI	GCTCTTC	1 cut(s)	555
Lsp1109I	GCAGC	4 cut(s)	429, 656, 706, 755
MaeI	CTAG	2 cut(s)	522, 868
MaeIII	GTNAC	4 cut(s)	85, 364, 432, 595
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	572, 660
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	319, 413
MluCI	AATT	8 cut(s)	102, 341, 347, 510, 543, 588, 714, 809
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	6 cut(s)	269, 295, 298, 468, 528, 801
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	3 cut(s)	188, 279, 864
MspR9I	CCNGG	3 cut(s)	220, 498, 612
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	220, 498, 612
MwoI	GCNNNNNNNGC	4 cut(s)	139, 224, 417, 571
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	3 cut(s)	468, 560, 731
NlaIV	GGNNCC	4 cut(s)	195, 244, 316, 317
NmuCI	GTSAC	4 cut(s)	85, 364, 432, 595
NspV	TTCGAA	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	3 cut(s)	11, 161, 323
PkrI	GCNGC	4 cut(s)	419, 646, 721, 770
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	218, 496, 610
PspEI	GGTNACC	2 cut(s)	85, 595
PspGI	CCWGG	3 cut(s)	218, 496, 610
PspN4I	GGNNCC	4 cut(s)	195, 244, 316, 317
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	6 cut(s)	56, 194, 243, 315, 316, 614
RsaI	GTAC	2 cut(s)	126, 637
RsaNI	GTAC	2 cut(s)	125, 636
SacI	GAGCTC	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	188, 279, 864
SatI	GCNGC	4 cut(s)	418, 645, 720, 769
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	6 cut(s)	56, 194, 243, 315, 316, 614
ScrFI	CCNGG	3 cut(s)	220, 498, 612
SduI	GDGCHC	2 cut(s)	319, 413
SfcI	CTRYAG	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	4 cut(s)	56, 194, 243, 614
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	8 cut(s)	102, 341, 347, 510, 543, 588, 714, 809
SspMI	CTAG	2 cut(s)	522, 868
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	218, 496, 610
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	3 cut(s)	35, 364, 801
TaqI	TCGA	3 cut(s)	23, 42, 251
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	8 cut(s)	102, 341, 347, 510, 543, 588, 714, 809
TfiI	GAWTC	3 cut(s)	11, 161, 323
Tru1I	TTAA	3 cut(s)	188, 279, 864
Tru9I	TTAA	3 cut(s)	188, 279, 864
TscAI	CASTG	2 cut(s)	369, 411
TseFI	GTSAC	4 cut(s)	85, 364, 432, 595
TseI	GCWGC	4 cut(s)	417, 644, 719, 768
Tsp45I	GTSAC	4 cut(s)	85, 364, 432, 595
TspDTI	ATGAA	2 cut(s)	319, 573
TspGWI	ACGGA	2 cut(s)	400, 517
TspRI	CASTG	2 cut(s)	369, 411
VpaK11BI	GGWCC	4 cut(s)	56, 194, 243, 614
XapI	RAATTY	3 cut(s)	102, 347, 809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	2 cut(s)	522, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.