AT3G26850

Zinc finger CCCH domain-containing protein 38-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009576
Physical Location & Seq
Reverse (-)
9895542 .. 9898006
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26850.1

Sequence Viewer

Length: 798 bp
ATGACTTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTACTCTGGAAAAGGCAAGATTGTTCCGGAATGTGGTCTTGTTGGTGATATGTATGATCCTTTTGTAGACAGTTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGATAACGACTTGTGCATTGTACCGAAGGCGAGCATTTCTTCGAATAGACCGCTTAGTATGGAAGAAAACAACCAAGCTGTTGATAAGGAACCTTTATGTGAGTCAGAAATGACTGCTCGGGTCAGTGTTTCCTCGAACAAACCAGCTGATGTTGAAGAAAACACTGCTGGAATTGAGATTGGAGAAGTTGTTTCTGGAGAGGATGATGAGTTTGGTAAGAATGTGGACGATGGAAGAGAATGTAATAGCCATGAGACTTTGACTCCAAACTCTGATAATGAGAATCCGAAGGTAGAGAACAATGTACATGAAGGCGATAACACAAGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGATTCATCAAGGTCCATGAAGCTTTTCAAAGTCGTGCTTACAAAATTCGTCAAGGATCTTCTGAAACCATCGTGGAGACAAGGGAATATGAGCAAGGAGGCGTTTAAGACTATTGTGAAGAGAGTGGTGGATAAAGTATCAAACTCAATGGAGGGTCGTCGTATTCCCAAATCAAGAGCTAAGATCGATAAGTACATTGATTCTTCACAGCAGAAGCTTACCAAACTGGTTATGGGTTATGTAGACAAGTATGTCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

265

Amino Acids

29.57

Weight (kDa)

5.38

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 193 - 250 2.5e-06 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AccI GTMKAC 2 cut(s) 123, 777
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 107, 597
AcsI RAATTY 1 cut(s) 578
AfaI GTAC 3 cut(s) 198, 483, 728
AfiI CCNNNNNNNGG 3 cut(s) 29, 62, 89
AgsI TTSAA 3 cut(s) 134, 332, 562
AluBI AGCT 6 cut(s) 44, 254, 323, 556, 713, 751
AluI AGCT 6 cut(s) 44, 254, 323, 556, 713, 751
Alw26I GTCTC 3 cut(s) 425, 516, 604
AlwI GGATC 2 cut(s) 107, 597
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 2 cut(s) 294, 513
Aor13HI TCCGGA 1 cut(s) 82
ApoI RAATTY 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 2 cut(s) 294, 513
AvaII GGWCC 1 cut(s) 546
BccI CCATC 3 cut(s) 23, 401, 610
BcoDI GTCTC 3 cut(s) 425, 516, 604
BfaI CTAG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 546
BmeT110I CYCGRG 2 cut(s) 294, 513
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 2 cut(s) 21, 267
BpmI CTGGAG 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 720
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 424, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 62, 89
Bse1I ACTGG 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 720
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 29, 62, 89
BseNI ACTGG 1 cut(s) 765
BshVI ATCGAT 1 cut(s) 720
BsiHKCI CYCGRG 2 cut(s) 294, 513
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 29, 62, 89
BsmAI GTCTC 3 cut(s) 425, 516, 604
BsoBI CYCGRG 2 cut(s) 294, 513
Bsp119I TTCGAA 1 cut(s) 218
Bsp13I TCCGGA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 3 cut(s) 112, 589, 717
BspACI CCGC 1 cut(s) 227
BspDI ATCGAT 1 cut(s) 720
BspEI TCCGGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 21, 267
BspPI GGATC 2 cut(s) 107, 597
BspT104I TTCGAA 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 1 cut(s) 765
BssMI GATC 3 cut(s) 112, 589, 717
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 406, 647
BstAUI TGTACA 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 230, 714
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 3 cut(s) 115, 592, 720
BstMAI GTCTC 3 cut(s) 425, 516, 604
BstMBI GATC 3 cut(s) 112, 589, 717
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 720
BsuTUI ATCGAT 1 cut(s) 720
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 307, 339
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 197, 482, 727
CviAII CATG 4 cut(s) 170, 428, 485, 550
CviJI RGCY 7 cut(s) 44, 254, 323, 426, 556, 713, 751
CviKI_1 RGCY 7 cut(s) 44, 254, 323, 426, 556, 713, 751
CviQI GTAC 3 cut(s) 197, 482, 727
DdeI CTNAG 2 cut(s) 230, 714
DpnI GATC 3 cut(s) 114, 591, 719
DpnII GATC 3 cut(s) 112, 589, 717
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1104I CTCTTC 2 cut(s) 406, 647
EarI CTCTTC 2 cut(s) 406, 647
Eco47I GGWCC 1 cut(s) 546
Eco88I CYCGRG 2 cut(s) 294, 513
FaeI CATG 4 cut(s) 173, 431, 488, 553
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 4 cut(s) 169, 427, 484, 549
FblI GTMKAC 2 cut(s) 123, 777
FokI GGATG 1 cut(s) 392
FspBI CTAG 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 393
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 173, 431, 488, 553
HindIII AAGCTT 3 cut(s) 42, 554, 749
HinfI GANTC 5 cut(s) 278, 439, 460, 536, 734
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 124, 403, 778
Hpy188I TCNGA 5 cut(s) 12, 283, 451, 465, 597
Hpy188III TCNNGA 9 cut(s) 23, 36, 63, 83, 164, 372, 513, 515, 708
Hpy8I GTNNAC 3 cut(s) 124, 403, 778
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 3 cut(s) 196, 460, 482
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 230, 714
Hsp92II CATG 4 cut(s) 173, 431, 488, 553
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 112, 589, 717
LmnI GCTCC 1 cut(s) 166
MaeI CTAG 1 cut(s) 36
MalI GATC 3 cut(s) 114, 591, 719
MboI GATC 3 cut(s) 112, 589, 717
MboII GAAGA 9 cut(s) 39, 42, 207, 251, 344, 423, 584, 664, 729
MflI RGATCY 1 cut(s) 589
MluCI AATT 3 cut(s) 149, 348, 578
MlyI GAGTC 2 cut(s) 287, 433
MnlI CCTC 5 cut(s) 10, 319, 370, 625, 679
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 83
NdeII GATC 3 cut(s) 112, 589, 717
NlaIII CATG 4 cut(s) 173, 431, 488, 553
NlaIV GGNNCC 2 cut(s) 21, 267
NspV TTCGAA 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 3 cut(s) 460, 536, 734
PleI GAGTC 2 cut(s) 286, 433
PpsI GAGTC 2 cut(s) 286, 433
PspN4I GGNNCC 2 cut(s) 21, 267
PspPI GGNCC 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 3 cut(s) 198, 483, 728
RsaNI GTAC 3 cut(s) 197, 482, 727
SaqAI TTAA 1 cut(s) 639
Sau3AI GATC 3 cut(s) 112, 589, 717
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 2 cut(s) 287, 433
Sfr274I CTCGAG 1 cut(s) 513
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 546
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 3 cut(s) 149, 348, 578
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 218, 311, 514, 720
TasI AATT 3 cut(s) 149, 348, 578
TatI WGTACW 2 cut(s) 481, 726
TfiI GAWTC 3 cut(s) 460, 536, 734
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 307, 346
TspDTI ATGAA 4 cut(s) 186, 501, 528, 566
TspRI CASTG 2 cut(s) 307, 346
VpaK11BI GGWCC 1 cut(s) 546
XapI RAATTY 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XhoI CTCGAG 1 cut(s) 513
XmiI GTMKAC 2 cut(s) 123, 777
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.