zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G26850 AT3G26850 |
| fragaria_vesca | FvH4_5g13670 FvH4_5g13670 FvH4_5g13670 |
| malus_domestica | MD14G1213100.v1.1 |
| prunus_persica | Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 |
| pyrus_communis | pycom14g17670 |
| rosa_chinensis | RchiOBHm_Chr7g0183291 |
| rosa_laevigata | RLG00000005060 |
| rosa_multiflora | Rmu_sc0008744.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00270600 |
| rosa_rugosa | Rorug06G0455800 Rorug06G0455900 |
| rosa_samantha | Rh7AG057800 Rh7BG057600 Rh7CG059200 Rh7DG057400 |
| rosa_wichuraiana | Rw7G004740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1665 |
| AarI | CACCTGC | 2 cut(s) | 67, 1883 |
| Acc36I | ACCTGC | 5 cut(s) | 67, 581, 1860, 1883, 3262 |
| Acc65I | GGTACC | 2 cut(s) | 1457, 2717 |
| AccB1I | GGYRCC | 6 cut(s) | 115, 1033, 1457, 1929, 2031, 2717 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3383, 3701 |
| AccI | GTMKAC | 1 cut(s) | 461 |
| AccIII | TCCGGA | 1 cut(s) | 1728 |
| AclWI | GGATC | 7 cut(s) | 1250, 1369, 2192, 3133, 3290, 3800, 4200 |
| AcoI | YGGCCR | 2 cut(s) | 7, 34 |
| AcsI | RAATTY | 9 cut(s) | 334, 1165, 1424, 2260, 3295, 3334, 3348, 3564, 3620 |
| AcuI | CTGAAG | 7 cut(s) | 77, 300, 768, 1083, 2399, 2974, 4220 |
| AcyI | GRCGYC | 2 cut(s) | 1930, 2032 |
| AdeI | CACNNNGTG | 2 cut(s) | 2942, 3662 |
| AfaI | GTAC | 5 cut(s) | 1459, 1465, 2719, 3074, 3441 |
| AflIII | ACRYGT | 2 cut(s) | 396, 3669 |
| AgeI | ACCGGT | 1 cut(s) | 1460 |
| AjiI | CACGTC | 1 cut(s) | 2555 |
| AjnI | CCWGG | 6 cut(s) | 36, 969, 1412, 3160, 3424, 3475 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2491, 2523 |
| Alw21I | GWGCWC | 4 cut(s) | 943, 1525, 2008, 2225 |
| Alw44I | GTGCAC | 1 cut(s) | 2004 |
| AlwI | GGATC | 7 cut(s) | 1250, 1369, 2192, 3133, 3290, 3800, 4200 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1154, 2930 |
| Aor13HI | TCCGGA | 1 cut(s) | 1728 |
| AoxI | GGCC | 8 cut(s) | 7, 34, 534, 1491, 2765, 3011, 3157, 3487 |
| ApaI | GGGCCC | 1 cut(s) | 3161 |
| ApaLI | GTGCAC | 1 cut(s) | 2004 |
| ApoI | RAATTY | 9 cut(s) | 334, 1165, 1424, 2260, 3295, 3334, 3348, 3564, 3620 |
| AseI | ATTAAT | 1 cut(s) | 1472 |
| AsiGI | ACCGGT | 1 cut(s) | 1460 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1828 |
| Asp718I | GGTACC | 2 cut(s) | 1457, 2717 |
| AspLEI | GCGC | 3 cut(s) | 28, 1932, 2034 |
| AspS9I | GGNCC | 8 cut(s) | 74, 179, 494, 1419, 2819, 3157, 3158, 3488 |
| AsuC2I | CCSGG | 3 cut(s) | 177, 1499, 3660 |
| AvaII | GGWCC | 5 cut(s) | 74, 179, 494, 1419, 2819 |
| BaeGI | GKGCMC | 2 cut(s) | 2008, 3161 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 2709, 2742, 3669, 3702, 4292, 4325 |
| BalI | TGGCCA | 1 cut(s) | 9 |
| BanI | GGYRCC | 6 cut(s) | 115, 1033, 1457, 1929, 2031, 2717 |
| BanII | GRGCYC | 4 cut(s) | 557, 1373, 2225, 3161 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4179, 4211 |
| BauI | CACGAG | 1 cut(s) | 2937 |
| BbsI | GAAGAC | 4 cut(s) | 533, 729, 1836, 3437 |
| Bbv12I | GWGCWC | 4 cut(s) | 943, 1525, 2008, 2225 |
| BbvCI | CCTCAGC | 1 cut(s) | 1155 |
| BceAI | ACGGC | 5 cut(s) | 13, 1707, 3034, 4015, 4189 |
| BciT130I | CCWGG | 6 cut(s) | 38, 971, 1414, 3162, 3426, 3477 |
| BciVI | GTATCC | 2 cut(s) | 1429, 1736 |
| BclI | TGATCA | 4 cut(s) | 1123, 2011, 3856, 4102 |
| BcnI | CCSGG | 3 cut(s) | 177, 1499, 3660 |
| BfmI | CTRYAG | 7 cut(s) | 150, 963, 1146, 2403, 2793, 3450, 4083 |
| BfoI | RGCGCY | 2 cut(s) | 1933, 2035 |
| BfuAI | ACCTGC | 5 cut(s) | 67, 581, 1860, 1883, 3262 |
| BfuI | GTATCC | 2 cut(s) | 1429, 1736 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4210 |
| Bme1390I | CCNGG | 9 cut(s) | 38, 177, 971, 1414, 1499, 3162, 3426, 3477, 3660 |
| Bme18I | GGWCC | 5 cut(s) | 74, 179, 494, 1419, 2819 |
| BmgBI | CACGTC | 1 cut(s) | 2555 |
| BmgT120I | GGNCC | 8 cut(s) | 74, 179, 494, 1419, 2819, 3157, 3158, 3488 |
| BmrFI | CCNGG | 9 cut(s) | 38, 177, 971, 1414, 1499, 3162, 3426, 3477, 3660 |
| BmrI | ACTGGG | 3 cut(s) | 1830, 2634, 3689 |
| BmuI | ACTGGG | 3 cut(s) | 1830, 2634, 3689 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3525 |
| BpiI | GAAGAC | 4 cut(s) | 533, 729, 1836, 3437 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1507, 1539, 1786, 1818, 1858, 1890 |
| BpmI | CTGGAG | 5 cut(s) | 504, 3342, 3492, 4137, 4299 |
| Bpu10I | CCTNAGC | 2 cut(s) | 660, 1155 |
| BpuEI | CTTGAG | 2 cut(s) | 3216, 3522 |
| BpuMI | CCSGG | 3 cut(s) | 177, 1499, 3660 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3210 |
| BsaHI | GRCGYC | 2 cut(s) | 1930, 2032 |
| BsaI | GGTCTC | 3 cut(s) | 1350, 1773, 1878 |
| BsaWI | WCCGGW | 2 cut(s) | 1460, 1728 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1741, 1771, 1783, 1813, 3178, 3208 |
| Bse118I | RCCGGY | 3 cut(s) | 536, 1460, 1764 |
| Bse1I | ACTGG | 7 cut(s) | 1836, 2640, 2721, 2777, 3439, 3683, 3695 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3210 |
| BseAI | TCCGGA | 1 cut(s) | 1728 |
| BseBI | CCWGG | 6 cut(s) | 38, 971, 1414, 3162, 3426, 3477 |
| BseJI | GATNNNNATC | 1 cut(s) | 3210 |
| BseNI | ACTGG | 7 cut(s) | 1836, 2640, 2721, 2777, 3439, 3683, 3695 |
| BseSI | GKGCMC | 2 cut(s) | 2008, 3161 |
| BseYI | CCCAGC | 2 cut(s) | 1340, 3722 |
| BsgI | GTGCAG | 6 cut(s) | 471, 1911, 2919, 3221, 3240, 4089 |
| BshFI | GGCC | 8 cut(s) | 9, 36, 536, 1493, 2767, 3013, 3159, 3489 |
| BshNI | GGYRCC | 6 cut(s) | 115, 1033, 1457, 1929, 2031, 2717 |
| BshTI | ACCGGT | 1 cut(s) | 1460 |
| BsiHKAI | GWGCWC | 4 cut(s) | 943, 1525, 2008, 2225 |
| BslFI | GGGAC | 7 cut(s) | 140, 991, 2541, 2765, 2805, 3481, 3677 |
| BsmBI | CGTCTC | 3 cut(s) | 784, 2439, 4347 |
| BsmFI | GGGAC | 7 cut(s) | 140, 991, 2541, 2765, 2805, 3481, 3677 |
| BsmI | GAATGC | 2 cut(s) | 1949, 3658 |
| BsnI | GGCC | 8 cut(s) | 9, 36, 536, 1493, 2767, 3013, 3159, 3489 |
| Bso31I | GGTCTC | 3 cut(s) | 1350, 1773, 1878 |
| Bsp120I | GGGCCC | 1 cut(s) | 3157 |
| Bsp1286I | GDGCHC | 7 cut(s) | 557, 943, 1373, 1525, 2008, 2225, 3161 |
| Bsp13I | TCCGGA | 1 cut(s) | 1728 |
| Bsp1407I | TGTACA | 1 cut(s) | 3439 |
| Bsp19I | CCATGG | 1 cut(s) | 283 |
| BspANI | GGCC | 8 cut(s) | 9, 36, 536, 1493, 2767, 3013, 3159, 3489 |
| BspEI | TCCGGA | 1 cut(s) | 1728 |
| BspHI | TCATGA | 2 cut(s) | 862, 1486 |
| BspMAI | CTGCAG | 4 cut(s) | 154, 967, 1150, 2407 |
| BspMI | ACCTGC | 5 cut(s) | 67, 581, 1860, 1883, 3262 |
| BspPI | GGATC | 7 cut(s) | 1250, 1369, 2192, 3133, 3290, 3800, 4200 |
| BspQI | GCTCTTC | 2 cut(s) | 4118, 4283 |
| BspT107I | GGYRCC | 6 cut(s) | 115, 1033, 1457, 1929, 2031, 2717 |
| BspTNI | GGTCTC | 3 cut(s) | 1350, 1773, 1878 |
| BsrFI | RCCGGY | 3 cut(s) | 536, 1460, 1764 |
| BsrGI | TGTACA | 1 cut(s) | 3439 |
| BsrI | ACTGG | 7 cut(s) | 1836, 2640, 2721, 2777, 3439, 3683, 3695 |
| BssAI | RCCGGY | 3 cut(s) | 536, 1460, 1764 |
| BssNI | GRCGYC | 2 cut(s) | 1930, 2032 |
| BssSI | CACGAG | 1 cut(s) | 2937 |
| BssT1I | CCWWGG | 4 cut(s) | 283, 1431, 2867, 2978 |
| Bst2BI | CACGAG | 1 cut(s) | 2937 |
| Bst2UI | CCWGG | 6 cut(s) | 38, 971, 1414, 3162, 3426, 3477 |
| Bst6I | CTCTTC | 8 cut(s) | 757, 787, 1807, 2091, 2640, 3933, 4118, 4283 |
| BstACI | GRCGYC | 2 cut(s) | 1930, 2032 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 304, 2531, 2930, 2942 |
| BstAUI | TGTACA | 1 cut(s) | 3439 |
| BstC8I | GCNNGC | 5 cut(s) | 141, 692, 797, 801, 1890 |
| BstDSI | CCRYGG | 2 cut(s) | 283, 1975 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 165, 1595 |
| BstH2I | RGCGCY | 2 cut(s) | 1933, 2035 |
| BstHHI | GCGC | 3 cut(s) | 28, 1932, 2034 |
| BstNI | CCWGG | 6 cut(s) | 38, 971, 1414, 3162, 3426, 3477 |
| BstNSI | RCATGY | 5 cut(s) | 314, 400, 2525, 3194, 3673 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3525 |
| BstSCI | CCNGG | 9 cut(s) | 36, 175, 969, 1412, 1497, 3160, 3424, 3475, 3658 |
| BstSFI | CTRYAG | 7 cut(s) | 150, 963, 1146, 2403, 2793, 3450, 4083 |
| BstSLI | GKGCMC | 2 cut(s) | 2008, 3161 |
| BstV2I | GAAGAC | 4 cut(s) | 533, 729, 1836, 3437 |
| BstX2I | RGATCY | 2 cut(s) | 1361, 4192 |
| BstYI | RGATCY | 2 cut(s) | 1361, 4192 |
| BsuI | GTATCC | 2 cut(s) | 1429, 1736 |
| BsuRI | GGCC | 8 cut(s) | 9, 36, 536, 1493, 2767, 3013, 3159, 3489 |
| BtgI | CCRYGG | 2 cut(s) | 283, 1975 |
| BtrI | CACGTC | 1 cut(s) | 2555 |
| BtsI | GCAGTG | 2 cut(s) | 119, 3724 |
| BtsIMutI | CAGTG | 7 cut(s) | 119, 238, 1635, 2559, 2728, 3724, 3916 |
| BveI | ACCTGC | 5 cut(s) | 67, 581, 1860, 1883, 3262 |
| Cac8I | GCNNGC | 5 cut(s) | 141, 692, 797, 801, 1890 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1154, 2930 |
| CciI | TCATGA | 2 cut(s) | 862, 1486 |
| CfoI | GCGC | 3 cut(s) | 28, 1932, 2034 |
| Cfr10I | RCCGGY | 3 cut(s) | 536, 1460, 1764 |
| Cfr13I | GGNCC | 8 cut(s) | 74, 179, 494, 1419, 2819, 3157, 3158, 3488 |
| Csp6I | GTAC | 5 cut(s) | 1458, 1464, 2718, 3073, 3440 |
| CspAI | ACCGGT | 1 cut(s) | 1460 |
| CviQI | GTAC | 5 cut(s) | 1458, 1464, 2718, 3073, 3440 |
| DinI | GGCGCC | 2 cut(s) | 1931, 2033 |
| DraI | TTTAAA | 2 cut(s) | 2919, 3333 |
| DraIII | CACNNNGTG | 2 cut(s) | 2942, 3662 |
| EaeI | YGGCCR | 2 cut(s) | 7, 34 |
| Eam1104I | CTCTTC | 8 cut(s) | 757, 787, 1807, 2091, 2640, 3933, 4118, 4283 |
| EarI | CTCTTC | 8 cut(s) | 757, 787, 1807, 2091, 2640, 3933, 4118, 4283 |
| EciI | GGCGGA | 1 cut(s) | 66 |
| Ecl136II | GAGCTC | 1 cut(s) | 2223 |
| Eco130I | CCWWGG | 4 cut(s) | 283, 1431, 2867, 2978 |
| Eco147I | AGGCCT | 2 cut(s) | 1493, 3013 |
| Eco24I | GRGCYC | 4 cut(s) | 557, 1373, 2225, 3161 |
| Eco31I | GGTCTC | 3 cut(s) | 1350, 1773, 1878 |
| Eco32I | GATATC | 1 cut(s) | 832 |
| Eco47I | GGWCC | 5 cut(s) | 74, 179, 494, 1419, 2819 |
| Eco53kI | GAGCTC | 1 cut(s) | 2223 |
| Eco57I | CTGAAG | 7 cut(s) | 77, 300, 768, 1083, 2399, 2974, 4220 |
| EcoICRI | GAGCTC | 1 cut(s) | 2223 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 165, 1595 |
| EcoO109I | RGGNCCY | 4 cut(s) | 179, 2819, 3157, 3158 |
| EcoRI | GAATTC | 1 cut(s) | 3564 |
| EcoRII | CCWGG | 6 cut(s) | 36, 969, 1412, 3160, 3424, 3475 |
| EcoRV | GATATC | 1 cut(s) | 832 |
| EcoT14I | CCWWGG | 4 cut(s) | 283, 1431, 2867, 2978 |
| EcoT22I | ATGCAT | 1 cut(s) | 1379 |
| EcoT38I | GRGCYC | 4 cut(s) | 557, 1373, 2225, 3161 |
| EgeI | GGCGCC | 2 cut(s) | 1931, 2033 |
| EheI | GGCGCC | 2 cut(s) | 1931, 2033 |
| ErhI | CCWWGG | 4 cut(s) | 283, 1431, 2867, 2978 |
| Esp3I | CGTCTC | 3 cut(s) | 784, 2439, 4347 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3041, 3073 |
| FaqI | GGGAC | 7 cut(s) | 140, 991, 2541, 2765, 2805, 3481, 3677 |
| FauI | CCCGC | 1 cut(s) | 226 |
| FauNDI | CATATG | 1 cut(s) | 3168 |
| FbaI | TGATCA | 4 cut(s) | 1123, 2011, 3856, 4102 |
| FblI | GTMKAC | 1 cut(s) | 461 |
| FriOI | GRGCYC | 4 cut(s) | 557, 1373, 2225, 3161 |
| GlaI | GCGC | 3 cut(s) | 27, 1931, 2033 |
| GsaI | CCCAGC | 2 cut(s) | 1344, 3726 |
| GsuI | CTGGAG | 5 cut(s) | 504, 3342, 3492, 4137, 4299 |
| HaeII | RGCGCY | 2 cut(s) | 1933, 2035 |
| HaeIII | GGCC | 8 cut(s) | 9, 36, 536, 1493, 2767, 3013, 3159, 3489 |
| HhaI | GCGC | 3 cut(s) | 28, 1932, 2034 |
| Hin1I | GRCGYC | 2 cut(s) | 1930, 2032 |
| Hin6I | GCGC | 3 cut(s) | 26, 1930, 2032 |
| HinP1I | GCGC | 3 cut(s) | 26, 1930, 2032 |
| HincII | GTYRAC | 3 cut(s) | 462, 1201, 3276 |
| HindII | GTYRAC | 3 cut(s) | 462, 1201, 3276 |
| HindIII | AAGCTT | 4 cut(s) | 510, 1065, 4236, 4361 |
| HpaI | GTTAAC | 2 cut(s) | 1201, 3276 |
| Hpy166II | GTNNAC | 7 cut(s) | 462, 950, 1201, 1658, 2006, 3276, 3440 |
| Hpy8I | GTNNAC | 7 cut(s) | 462, 950, 1201, 1658, 2006, 3276, 3440 |
| Hpy99I | CGWCG | 1 cut(s) | 463 |
| HpyCH4IV | ACGT | 3 cut(s) | 1660, 2161, 2554 |
| HpySE526I | ACGT | 3 cut(s) | 1660, 2161, 2554 |
| Hsp92I | GRCGYC | 2 cut(s) | 1930, 2032 |
| HspAI | GCGC | 3 cut(s) | 26, 1930, 2032 |
| KasI | GGCGCC | 2 cut(s) | 1929, 2031 |
| Kpn2I | TCCGGA | 1 cut(s) | 1728 |
| KpnI | GGTACC | 2 cut(s) | 1461, 2721 |
| Ksp22I | TGATCA | 4 cut(s) | 1123, 2011, 3856, 4102 |
| KspAI | GTTAAC | 2 cut(s) | 1201, 3276 |
| LguI | GCTCTTC | 2 cut(s) | 4118, 4283 |
| MaeII | ACGT | 3 cut(s) | 1660, 2161, 2554 |
| MfeI | CAATTG | 1 cut(s) | 1016 |
| MflI | RGATCY | 2 cut(s) | 1361, 4192 |
| MhlI | GDGCHC | 7 cut(s) | 557, 943, 1373, 1525, 2008, 2225, 3161 |
| MlsI | TGGCCA | 1 cut(s) | 9 |
| MluNI | TGGCCA | 1 cut(s) | 9 |
| Mly113I | GGCGCC | 2 cut(s) | 1930, 2032 |
| MlyI | GAGTC | 9 cut(s) | 361, 743, 1492, 1562, 1807, 2636, 3535, 4057, 4331 |
| MmeI | TCCRAC | 5 cut(s) | 124, 299, 364, 618, 2256 |
| Mox20I | TGGCCA | 1 cut(s) | 9 |
| Mph1103I | ATGCAT | 1 cut(s) | 1379 |
| MroI | TCCGGA | 1 cut(s) | 1728 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1828 |
| MscI | TGGCCA | 1 cut(s) | 9 |
| MseI | TTAA | 9 cut(s) | 1200, 1320, 1452, 1472, 1479, 2091, 2918, 3275, 3332 |
| MslI | CAYNNNNRTG | 4 cut(s) | 818, 933, 955, 1335 |
| Msp20I | TGGCCA | 1 cut(s) | 9 |
| MspA1I | CMGCKG | 5 cut(s) | 221, 1151, 2237, 2677, 4348 |
| MspR9I | CCNGG | 9 cut(s) | 38, 177, 971, 1414, 1499, 3162, 3426, 3477, 3660 |
| MunI | CAATTG | 1 cut(s) | 1016 |
| Mva1269I | GAATGC | 2 cut(s) | 1949, 3658 |
| MvaI | CCWGG | 6 cut(s) | 38, 971, 1414, 3162, 3426, 3477 |
| NarI | GGCGCC | 2 cut(s) | 1930, 2032 |
| NciI | CCSGG | 3 cut(s) | 177, 1499, 3660 |
| NcoI | CCATGG | 1 cut(s) | 283 |
| NdeI | CATATG | 1 cut(s) | 3168 |
| NmeAIII | GCCGAG | 1 cut(s) | 3774 |
| NsiI | ATGCAT | 1 cut(s) | 1379 |
| NspI | RCATGY | 5 cut(s) | 314, 400, 2525, 3194, 3673 |
| PagI | TCATGA | 2 cut(s) | 862, 1486 |
| PaqCI | CACCTGC | 2 cut(s) | 67, 1883 |
| PasI | CCCWGGG | 1 cut(s) | 970 |
| PceI | AGGCCT | 2 cut(s) | 1493, 3013 |
| PciI | ACATGT | 2 cut(s) | 396, 3669 |
| PciSI | GCTCTTC | 2 cut(s) | 4118, 4283 |
| PctI | GAATGC | 2 cut(s) | 1949, 3658 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1828 |
| PflFI | GACNNNGTC | 1 cut(s) | 1576 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3383, 3701 |
| PfoI | TCCNGGA | 1 cut(s) | 1412 |
| PinAI | ACCGGT | 1 cut(s) | 1460 |
| PleI | GAGTC | 9 cut(s) | 361, 743, 1491, 1561, 1806, 2635, 3534, 4056, 4331 |
| PluTI | GGCGCC | 2 cut(s) | 1933, 2035 |
| PpsI | GAGTC | 9 cut(s) | 361, 743, 1491, 1561, 1806, 2635, 3534, 4056, 4331 |
| PpuMI | RGGWCCY | 2 cut(s) | 179, 2819 |
| PscI | ACATGT | 2 cut(s) | 396, 3669 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3525 |
| PshBI | ATTAAT | 1 cut(s) | 1472 |
| PsiI | TTATAA | 1 cut(s) | 1665 |
| Psp124BI | GAGCTC | 1 cut(s) | 2225 |
| Psp5II | RGGWCCY | 2 cut(s) | 179, 2819 |
| Psp6I | CCWGG | 6 cut(s) | 36, 969, 1412, 3160, 3424, 3475 |
| PspFI | CCCAGC | 2 cut(s) | 1340, 3722 |
| PspGI | CCWGG | 6 cut(s) | 36, 969, 1412, 3160, 3424, 3475 |
| PspOMI | GGGCCC | 1 cut(s) | 3157 |
| PspPI | GGNCC | 8 cut(s) | 74, 179, 494, 1419, 2819, 3157, 3158, 3488 |
| PspPPI | RGGWCCY | 2 cut(s) | 179, 2819 |
| PstI | CTGCAG | 4 cut(s) | 154, 967, 1150, 2407 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1154, 2930 |
| PsuI | RGATCY | 2 cut(s) | 1361, 4192 |
| PsyI | GACNNNGTC | 1 cut(s) | 1576 |
| PvuII | CAGCTG | 2 cut(s) | 2237, 2677 |
| RsaI | GTAC | 5 cut(s) | 1459, 1465, 2719, 3074, 3441 |
| RsaNI | GTAC | 5 cut(s) | 1458, 1464, 2718, 3073, 3440 |
| RseI | CAYNNNNRTG | 4 cut(s) | 818, 933, 955, 1335 |
| SacI | GAGCTC | 1 cut(s) | 2225 |
| SalI | GTCGAC | 1 cut(s) | 460 |
| SapI | GCTCTTC | 2 cut(s) | 4118, 4283 |
| SaqAI | TTAA | 9 cut(s) | 1200, 1320, 1452, 1472, 1479, 2091, 2918, 3275, 3332 |
| Sau96I | GGNCC | 8 cut(s) | 74, 179, 494, 1419, 2819, 3157, 3158, 3488 |
| SchI | GAGTC | 9 cut(s) | 361, 743, 1492, 1562, 1807, 2636, 3535, 4057, 4331 |
| ScrFI | CCNGG | 9 cut(s) | 38, 177, 971, 1414, 1499, 3162, 3426, 3477, 3660 |
| SduI | GDGCHC | 7 cut(s) | 557, 943, 1373, 1525, 2008, 2225, 3161 |
| SfcI | CTRYAG | 7 cut(s) | 150, 963, 1146, 2403, 2793, 3450, 4083 |
| SfoI | GGCGCC | 2 cut(s) | 1931, 2033 |
| SinI | GGWCC | 5 cut(s) | 74, 179, 494, 1419, 2819 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 818, 933, 955, 1335 |
| SmlI | CTYRAG | 2 cut(s) | 3231, 3537 |
| SmoI | CTYRAG | 2 cut(s) | 3231, 3537 |
| SseBI | AGGCCT | 2 cut(s) | 1493, 3013 |
| SspDI | GGCGCC | 2 cut(s) | 1929, 2031 |
| SstI | GAGCTC | 1 cut(s) | 2225 |
| StuI | AGGCCT | 2 cut(s) | 1493, 3013 |
| StyD4I | CCNGG | 9 cut(s) | 36, 175, 969, 1412, 1497, 3160, 3424, 3475, 3658 |
| StyI | CCWWGG | 4 cut(s) | 283, 1431, 2867, 2978 |
| TaiI | ACGT | 3 cut(s) | 1663, 2164, 2557 |
| TaqI | TCGA | 3 cut(s) | 461, 2389, 2479 |
| TaqII | GACCGA | 1 cut(s) | 2279 |
| TatI | WGTACW | 1 cut(s) | 3439 |
| TauI | GCSGC | 7 cut(s) | 1154, 1707, 1713, 1755, 2884, 2887, 4216 |
| Tru1I | TTAA | 9 cut(s) | 1200, 1320, 1452, 1472, 1479, 2091, 2918, 3275, 3332 |
| Tru9I | TTAA | 9 cut(s) | 1200, 1320, 1452, 1472, 1479, 2091, 2918, 3275, 3332 |
| TscAI | CASTG | 7 cut(s) | 126, 238, 1642, 2566, 2728, 3724, 3916 |
| TspGWI | ACGGA | 5 cut(s) | 216, 276, 861, 1964, 2658 |
| TspRI | CASTG | 7 cut(s) | 126, 238, 1642, 2566, 2728, 3724, 3916 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1576 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3383, 3701 |
| VneI | GTGCAC | 1 cut(s) | 2004 |
| VpaK11BI | GGWCC | 5 cut(s) | 74, 179, 494, 1419, 2819 |
| VspI | ATTAAT | 1 cut(s) | 1472 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 165, 1595 |
| XapI | RAATTY | 9 cut(s) | 334, 1165, 1424, 2260, 3295, 3334, 3348, 3564, 3620 |
| XbaI | TCTAGA | 4 cut(s) | 1040, 2056, 2225, 3560 |
| XceI | RCATGY | 5 cut(s) | 314, 400, 2525, 3194, 3673 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 17, 1337, 1429 |
| XmiI | GTMKAC | 1 cut(s) | 461 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1828 |
| Zsp2I | ATGCAT | 1 cut(s) | 1379 |