zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G26850 AT3G26850 |
| fragaria_vesca | FvH4_5g13670 FvH4_5g13670 FvH4_5g13670 |
| malus_domestica | MD14G1213100.v1.1 |
| prunus_persica | Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 Prupe.5G206700_v2.0.a1 |
| pyrus_communis | pycom14g17670 |
| rosa_chinensis | RchiOBHm_Chr7g0183291 |
| rosa_laevigata | RLG00000005060 |
| rosa_multiflora | Rmu_sc0008744.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00270600 |
| rosa_rugosa | Rorug06G0455800 Rorug06G0455900 |
| rosa_samantha | Rh7AG057800 Rh7BG057600 Rh7CG059200 Rh7DG057400 |
| rosa_wichuraiana | Rw7G004740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1995, 3261 |
| AarI | CACCTGC | 3 cut(s) | 70, 2411, 2764 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4895 |
| Acc36I | ACCTGC | 5 cut(s) | 70, 926, 2388, 2411, 2764 |
| Acc65I | GGTACC | 1 cut(s) | 3221 |
| AccB1I | GGYRCC | 2 cut(s) | 2559, 3221 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 317, 554, 1151, 3881 |
| AccBSI | CCGCTC | 1 cut(s) | 262 |
| AccII | CGCG | 1 cut(s) | 2418 |
| AccIII | TCCGGA | 2 cut(s) | 2143, 4784 |
| AclI | AACGTT | 1 cut(s) | 2051 |
| AcoI | YGGCCR | 4 cut(s) | 7, 22, 2100, 3154 |
| AcuI | CTGAAG | 1 cut(s) | 3269 |
| AcyI | GRCGYC | 1 cut(s) | 1488 |
| AfaI | GTAC | 6 cut(s) | 325, 1705, 2047, 2113, 3223, 3575 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1116, 1148, 1187, 1219 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2311, 2343 |
| Alw21I | GWGCWC | 2 cut(s) | 565, 2853 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 701, 1718, 1880, 3434 |
| Aor13HI | TCCGGA | 2 cut(s) | 2143, 4784 |
| ApaI | GGGCCC | 1 cut(s) | 197 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4234, 4266 |
| AseI | ATTAAT | 1 cut(s) | 2736 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 2172, 2326, 2356, 3030, 3177 |
| Asp718I | GGTACC | 1 cut(s) | 3221 |
| AspLEI | GCGC | 4 cut(s) | 81, 2418, 2420, 2460 |
| AvaII | GGWCC | 6 cut(s) | 41, 122, 461, 1070, 3098, 3986 |
| AxyI | CCTNAGG | 1 cut(s) | 1719 |
| BaeGI | GKGCMC | 2 cut(s) | 197, 565 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2103, 2136, 4799, 4832 |
| BalI | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| BamHI | GGATCC | 1 cut(s) | 3626 |
| BanI | GGYRCC | 2 cut(s) | 2559, 3221 |
| BanII | GRGCYC | 2 cut(s) | 197, 902 |
| BauI | CACGAG | 1 cut(s) | 3441 |
| BbsI | GAAGAC | 3 cut(s) | 563, 2364, 3935 |
| Bbv12I | GWGCWC | 2 cut(s) | 565, 2853 |
| BbvCI | CCTCAGC | 1 cut(s) | 715 |
| BceAI | ACGGC | 1 cut(s) | 1414 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 26, 60, 2478, 2512, 3102, 3136 |
| BciVI | GTATCC | 2 cut(s) | 546, 2032 |
| BclI | TGATCA | 3 cut(s) | 793, 1687, 4609 |
| BfmI | CTRYAG | 8 cut(s) | 144, 1710, 2766, 2952, 3088, 3297, 4005, 4590 |
| BfoI | RGCGCY | 2 cut(s) | 82, 2461 |
| BfuAI | ACCTGC | 5 cut(s) | 70, 926, 2388, 2411, 2764 |
| BfuI | GTATCC | 2 cut(s) | 546, 2032 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4717 |
| BglII | AGATCT | 1 cut(s) | 2609 |
| BlpI | GCTNAGC | 1 cut(s) | 354 |
| BmcAI | AGTACT | 1 cut(s) | 1705 |
| Bme18I | GGWCC | 6 cut(s) | 41, 122, 461, 1070, 3098, 3986 |
| BmrI | ACTGGG | 1 cut(s) | 4383 |
| BmuI | ACTGGG | 1 cut(s) | 4383 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4757 |
| BpiI | GAAGAC | 3 cut(s) | 563, 2364, 3935 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2386, 2418, 4606, 4638 |
| BpmI | CTGGAG | 4 cut(s) | 969, 1641, 3564, 4608 |
| Bpu10I | CCTNAGC | 2 cut(s) | 715, 1005 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 354 |
| BpuEI | CTTGAG | 1 cut(s) | 2837 |
| BsaBI | GATNNNNATC | 2 cut(s) | 961, 2919 |
| BsaHI | GRCGYC | 1 cut(s) | 1488 |
| BsaI | GGTCTC | 5 cut(s) | 1356, 1914, 2307, 2406, 4786 |
| BsaWI | WCCGGW | 2 cut(s) | 2143, 4784 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2311, 2341, 3679, 3709, 4402, 4432 |
| Bse118I | RCCGGY | 1 cut(s) | 2102 |
| Bse1I | ACTGG | 9 cut(s) | 559, 2043, 2220, 2801, 3225, 3581, 3937, 4389, 4875 |
| Bse21I | CCTNAGG | 1 cut(s) | 1719 |
| Bse3DI | GCAATG | 2 cut(s) | 722, 3120 |
| Bse8I | GATNNNNATC | 2 cut(s) | 961, 2919 |
| BseAI | TCCGGA | 2 cut(s) | 2143, 4784 |
| BseJI | GATNNNNATC | 2 cut(s) | 961, 2919 |
| BseMI | GCAATG | 2 cut(s) | 722, 3120 |
| BseMII | CTCAG | 6 cut(s) | 191, 368, 729, 1710, 1926, 3560 |
| BseNI | ACTGG | 9 cut(s) | 559, 2043, 2220, 2801, 3225, 3581, 3937, 4389, 4875 |
| BsePI | GCGCGC | 1 cut(s) | 2416 |
| BseSI | GKGCMC | 2 cut(s) | 197, 565 |
| BsgI | GTGCAG | 4 cut(s) | 486, 2792, 3423, 3722 |
| Bsh1236I | CGCG | 1 cut(s) | 2418 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3404 |
| BshNI | GGYRCC | 2 cut(s) | 2559, 3221 |
| BsiEI | CGRYCG | 1 cut(s) | 3404 |
| BsiHKAI | GWGCWC | 2 cut(s) | 565, 2853 |
| BsiSI | CCGG | 6 cut(s) | 2103, 2144, 2317, 3514, 3630, 4785 |
| BslFI | GGGAC | 5 cut(s) | 135, 155, 1926, 2994, 3979 |
| BsmBI | CGTCTC | 2 cut(s) | 2205, 4038 |
| BsmFI | GGGAC | 5 cut(s) | 135, 155, 1926, 2994, 3979 |
| BsmI | GAATGC | 3 cut(s) | 1294, 1637, 2477 |
| Bso31I | GGTCTC | 5 cut(s) | 1356, 1914, 2307, 2406, 4786 |
| Bsp120I | GGGCCC | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 4 cut(s) | 197, 565, 902, 2853 |
| Bsp13I | TCCGGA | 2 cut(s) | 2143, 4784 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 354 |
| Bsp19I | CCATGG | 1 cut(s) | 316 |
| BspCNI | CTCAG | 6 cut(s) | 190, 367, 728, 1711, 1927, 3559 |
| BspEI | TCCGGA | 2 cut(s) | 2143, 4784 |
| BspFNI | CGCG | 1 cut(s) | 2418 |
| BspHI | TCATGA | 2 cut(s) | 2071, 2530 |
| BspMAI | CTGCAG | 2 cut(s) | 1714, 4594 |
| BspMI | ACCTGC | 5 cut(s) | 70, 926, 2388, 2411, 2764 |
| BspQI | GCTCTTC | 1 cut(s) | 4625 |
| BspT107I | GGYRCC | 2 cut(s) | 2559, 3221 |
| BspTNI | GGTCTC | 5 cut(s) | 1356, 1914, 2307, 2406, 4786 |
| BsrBI | CCGCTC | 1 cut(s) | 262 |
| BsrDI | GCAATG | 2 cut(s) | 722, 3120 |
| BsrFI | RCCGGY | 1 cut(s) | 2102 |
| BsrI | ACTGG | 9 cut(s) | 559, 2043, 2220, 2801, 3225, 3581, 3937, 4389, 4875 |
| BssAI | RCCGGY | 1 cut(s) | 2102 |
| BssHII | GCGCGC | 1 cut(s) | 2416 |
| BssNI | GRCGYC | 1 cut(s) | 1488 |
| BssSI | CACGAG | 1 cut(s) | 3441 |
| BssT1I | CCWWGG | 3 cut(s) | 316, 1638, 3482 |
| Bst2BI | CACGAG | 1 cut(s) | 3441 |
| Bst6I | CTCTTC | 6 cut(s) | 604, 1270, 2335, 2619, 4440, 4625 |
| BstACI | GRCGYC | 1 cut(s) | 1488 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 364, 1163, 2689, 3434, 3787 |
| BstC8I | GCNNGC | 5 cut(s) | 156, 729, 1310, 1314, 2418 |
| BstDSI | CCRYGG | 4 cut(s) | 265, 316, 2503, 3764 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 180, 309, 414, 3216 |
| BstFNI | CGCG | 1 cut(s) | 2418 |
| BstH2I | RGCGCY | 2 cut(s) | 82, 2461 |
| BstHHI | GCGC | 4 cut(s) | 81, 2418, 2420, 2460 |
| BstMCI | CGRYCG | 1 cut(s) | 3404 |
| BstNSI | RCATGY | 5 cut(s) | 448, 673, 1951, 3344, 3695 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4757 |
| BstSFI | CTRYAG | 8 cut(s) | 144, 1710, 2766, 2952, 3088, 3297, 4005, 4590 |
| BstSLI | GKGCMC | 2 cut(s) | 197, 565 |
| BstUI | CGCG | 1 cut(s) | 2418 |
| BstV2I | GAAGAC | 3 cut(s) | 563, 2364, 3935 |
| BstX2I | RGATCY | 5 cut(s) | 832, 1931, 2609, 3626, 4438 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 32, 4405 |
| BstYI | RGATCY | 5 cut(s) | 832, 1931, 2609, 3626, 4438 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1719 |
| BsuI | GTATCC | 2 cut(s) | 546, 2032 |
| BtgI | CCRYGG | 4 cut(s) | 265, 316, 2503, 3764 |
| BtgZI | GCGATG | 1 cut(s) | 4833 |
| BtsI | GCAGTG | 2 cut(s) | 2893, 4231 |
| BveI | ACCTGC | 5 cut(s) | 70, 926, 2388, 2411, 2764 |
| Cac8I | GCNNGC | 5 cut(s) | 156, 729, 1310, 1314, 2418 |
| CaiI | CAGNNNCTG | 4 cut(s) | 701, 1718, 1880, 3434 |
| CciI | TCATGA | 2 cut(s) | 2071, 2530 |
| CfoI | GCGC | 4 cut(s) | 81, 2418, 2420, 2460 |
| Cfr10I | RCCGGY | 1 cut(s) | 2102 |
| CseI | GACGC | 2 cut(s) | 1477, 4402 |
| Csp6I | GTAC | 6 cut(s) | 324, 1704, 2046, 2112, 3222, 3574 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 613, 648, 3387, 3422 |
| CviQI | GTAC | 6 cut(s) | 324, 1704, 2046, 2112, 3222, 3574 |
| DraI | TTTAAA | 3 cut(s) | 1917, 3711, 3831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4895 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4895 |
| EaeI | YGGCCR | 4 cut(s) | 7, 22, 2100, 3154 |
| Eam1104I | CTCTTC | 6 cut(s) | 604, 1270, 2335, 2619, 4440, 4625 |
| EarI | CTCTTC | 6 cut(s) | 604, 1270, 2335, 2619, 4440, 4625 |
| Eco130I | CCWWGG | 3 cut(s) | 316, 1638, 3482 |
| Eco24I | GRGCYC | 2 cut(s) | 197, 902 |
| Eco31I | GGTCTC | 5 cut(s) | 1356, 1914, 2307, 2406, 4786 |
| Eco32I | GATATC | 1 cut(s) | 1345 |
| Eco47I | GGWCC | 6 cut(s) | 41, 122, 461, 1070, 3098, 3986 |
| Eco57I | CTGAAG | 1 cut(s) | 3269 |
| Eco81I | CCTNAGG | 1 cut(s) | 1719 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 180, 309, 414, 3216 |
| EcoO109I | RGGNCCY | 5 cut(s) | 41, 122, 193, 194, 3657 |
| EcoRI | GAATTC | 1 cut(s) | 4062 |
| EcoRV | GATATC | 1 cut(s) | 1345 |
| EcoT14I | CCWWGG | 3 cut(s) | 316, 1638, 3482 |
| EcoT22I | ATGCAT | 2 cut(s) | 2098, 2529 |
| EcoT38I | GRGCYC | 2 cut(s) | 197, 902 |
| ErhI | CCWWGG | 3 cut(s) | 316, 1638, 3482 |
| Esp3I | CGTCTC | 2 cut(s) | 2205, 4038 |
| FaqI | GGGAC | 5 cut(s) | 135, 155, 1926, 2994, 3979 |
| FauI | CCCGC | 3 cut(s) | 183, 736, 3579 |
| FbaI | TGATCA | 3 cut(s) | 793, 1687, 4609 |
| FriOI | GRGCYC | 2 cut(s) | 197, 902 |
| GlaI | GCGC | 4 cut(s) | 80, 2417, 2419, 2459 |
| GsuI | CTGGAG | 4 cut(s) | 969, 1641, 3564, 4608 |
| HaeII | RGCGCY | 2 cut(s) | 82, 2461 |
| HapII | CCGG | 6 cut(s) | 2103, 2144, 2317, 3514, 3630, 4785 |
| HgaI | GACGC | 2 cut(s) | 1477, 4402 |
| HhaI | GCGC | 4 cut(s) | 81, 2418, 2420, 2460 |
| Hin1I | GRCGYC | 1 cut(s) | 1488 |
| Hin6I | GCGC | 4 cut(s) | 79, 2416, 2418, 2458 |
| HinP1I | GCGC | 4 cut(s) | 79, 2416, 2418, 2458 |
| HincII | GTYRAC | 3 cut(s) | 3647, 4430, 4888 |
| HindII | GTYRAC | 3 cut(s) | 3647, 4430, 4888 |
| HpaII | CCGG | 6 cut(s) | 2103, 2144, 2317, 3514, 3630, 4785 |
| HpyCH4IV | ACGT | 3 cut(s) | 2051, 3992, 4459 |
| HpySE526I | ACGT | 3 cut(s) | 2051, 3992, 4459 |
| Hsp92I | GRCGYC | 1 cut(s) | 1488 |
| HspAI | GCGC | 4 cut(s) | 79, 2416, 2418, 2458 |
| Kpn2I | TCCGGA | 2 cut(s) | 2143, 4784 |
| KpnI | GGTACC | 1 cut(s) | 3225 |
| Ksp22I | TGATCA | 3 cut(s) | 793, 1687, 4609 |
| LguI | GCTCTTC | 1 cut(s) | 4625 |
| MaeII | ACGT | 3 cut(s) | 2051, 3992, 4459 |
| MaeIII | GTNAC | 7 cut(s) | 341, 1870, 2222, 2228, 3048, 3554, 4815 |
| MbiI | CCGCTC | 1 cut(s) | 262 |
| MfeI | CAATTG | 5 cut(s) | 1161, 1383, 2061, 2760, 3108 |
| MflI | RGATCY | 5 cut(s) | 832, 1931, 2609, 3626, 4438 |
| MhlI | GDGCHC | 4 cut(s) | 197, 565, 902, 2853 |
| MlsI | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| MluNI | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| MlyI | GAGTC | 9 cut(s) | 1084, 1256, 1948, 1970, 2077, 3118, 4564, 4628, 4838 |
| MmeI | TCCRAC | 4 cut(s) | 776, 963, 3548, 4210 |
| Mox20I | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| Mph1103I | ATGCAT | 2 cut(s) | 2098, 2529 |
| MroI | TCCGGA | 2 cut(s) | 2143, 4784 |
| MroXI | GAANNNNTTC | 5 cut(s) | 2172, 2326, 2356, 3030, 3177 |
| MscI | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1287, 1331, 1468, 2535, 3951 |
| Msp20I | TGGCCA | 3 cut(s) | 9, 24, 3156 |
| MspA1I | CMGCKG | 5 cut(s) | 190, 887, 1619, 1877, 4282 |
| MspI | CCGG | 6 cut(s) | 2103, 2144, 2317, 3514, 3630, 4785 |
| MunI | CAATTG | 5 cut(s) | 1161, 1383, 2061, 2760, 3108 |
| Mva1269I | GAATGC | 3 cut(s) | 1294, 1637, 2477 |
| MvnI | CGCG | 1 cut(s) | 2418 |
| NcoI | CCATGG | 1 cut(s) | 316 |
| NmeAIII | GCCGAG | 1 cut(s) | 659 |
| NmuCI | GTSAC | 4 cut(s) | 2222, 3048, 3554, 4815 |
| NsiI | ATGCAT | 2 cut(s) | 2098, 2529 |
| NspI | RCATGY | 5 cut(s) | 448, 673, 1951, 3344, 3695 |
| PagI | TCATGA | 2 cut(s) | 2071, 2530 |
| PaqCI | CACCTGC | 3 cut(s) | 70, 2411, 2764 |
| PasI | CCCWGGG | 1 cut(s) | 1483 |
| PauI | GCGCGC | 1 cut(s) | 2416 |
| PciI | ACATGT | 1 cut(s) | 444 |
| PciSI | GCTCTTC | 1 cut(s) | 4625 |
| PctI | GAATGC | 3 cut(s) | 1294, 1637, 2477 |
| PdmI | GAANNNNTTC | 5 cut(s) | 2172, 2326, 2356, 3030, 3177 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 317, 554, 1151, 3881 |
| PfoI | TCCNGGA | 1 cut(s) | 2082 |
| PleI | GAGTC | 9 cut(s) | 1084, 1256, 1947, 1969, 2076, 3118, 4563, 4627, 4838 |
| PpsI | GAGTC | 9 cut(s) | 1084, 1256, 1947, 1969, 2076, 3118, 4563, 4627, 4838 |
| PpuMI | RGGWCCY | 2 cut(s) | 41, 122 |
| PscI | ACATGT | 1 cut(s) | 444 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4757 |
| PshBI | ATTAAT | 1 cut(s) | 2736 |
| PsiI | TTATAA | 2 cut(s) | 1995, 3261 |
| Psp1406I | AACGTT | 1 cut(s) | 2051 |
| Psp5II | RGGWCCY | 2 cut(s) | 41, 122 |
| PspOMI | GGGCCC | 1 cut(s) | 193 |
| PspPPI | RGGWCCY | 2 cut(s) | 41, 122 |
| PstI | CTGCAG | 2 cut(s) | 1714, 4594 |
| PstNI | CAGNNNCTG | 4 cut(s) | 701, 1718, 1880, 3434 |
| PsuI | RGATCY | 5 cut(s) | 832, 1931, 2609, 3626, 4438 |
| PteI | GCGCGC | 1 cut(s) | 2416 |
| PvuII | CAGCTG | 4 cut(s) | 887, 1619, 1877, 4282 |
| RsaI | GTAC | 6 cut(s) | 325, 1705, 2047, 2113, 3223, 3575 |
| RsaNI | GTAC | 6 cut(s) | 324, 1704, 2046, 2112, 3222, 3574 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1287, 1331, 1468, 2535, 3951 |
| SapI | GCTCTTC | 1 cut(s) | 4625 |
| ScaI | AGTACT | 1 cut(s) | 1705 |
| SchI | GAGTC | 9 cut(s) | 1084, 1256, 1948, 1970, 2077, 3118, 4564, 4628, 4838 |
| SduI | GDGCHC | 4 cut(s) | 197, 565, 902, 2853 |
| SfcI | CTRYAG | 8 cut(s) | 144, 1710, 2766, 2952, 3088, 3297, 4005, 4590 |
| SinI | GGWCC | 6 cut(s) | 41, 122, 461, 1070, 3098, 3986 |
| SmiI | ATTTAAAT | 1 cut(s) | 3711 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1287, 1331, 1468, 2535, 3951 |
| SmlI | CTYRAG | 1 cut(s) | 2852 |
| SmoI | CTYRAG | 1 cut(s) | 2852 |
| SspI | AATATT | 1 cut(s) | 4168 |
| StyI | CCWWGG | 3 cut(s) | 316, 1638, 3482 |
| SwaI | ATTTAAAT | 1 cut(s) | 3711 |
| TaiI | ACGT | 3 cut(s) | 2054, 3995, 4462 |
| TaqI | TCGA | 8 cut(s) | 1080, 2281, 2375, 2488, 2958, 3058, 3122, 3355 |
| TaqII | GACCGA | 1 cut(s) | 2289 |
| TatI | WGTACW | 2 cut(s) | 1703, 2045 |
| TauI | GCSGC | 5 cut(s) | 857, 2295, 3388, 3391, 4723 |
| TseFI | GTSAC | 4 cut(s) | 2222, 3048, 3554, 4815 |
| Tsp45I | GTSAC | 4 cut(s) | 2222, 3048, 3554, 4815 |
| TspGWI | ACGGA | 1 cut(s) | 254 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 317, 554, 1151, 3881 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 6 cut(s) | 41, 122, 461, 1070, 3098, 3986 |
| VspI | ATTAAT | 1 cut(s) | 2736 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 180, 309, 414, 3216 |
| XbaI | TCTAGA | 3 cut(s) | 2750, 4058, 4495 |
| XceI | RCATGY | 5 cut(s) | 448, 673, 1951, 3344, 3695 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 17, 1901 |
| XmnI | GAANNNNTTC | 5 cut(s) | 2172, 2326, 2356, 3030, 3177 |
| ZrmI | AGTACT | 1 cut(s) | 1705 |
| Zsp2I | ATGCAT | 2 cut(s) | 2098, 2529 |