Rorug06G0455900

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009576
Physical Location & Seq
Reverse (-)
58374229 .. 58375946
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0455900.1

Sequence Viewer

Length: 1002 bp
ATGAGAACCCAGCAGCCTAAGCTTAAGACCCAGTTTTTCTCTTGTGGATTCTTCGGCCACTGTACCGGAACAGTCCTCAGCCCCACCACGCCTCATCCTCCAACTCTCCCTTTCTCATCCACCGATCCATTACCACCTTCGTTGTCAATTGCCGCTCCTTCAACACAATCCGACCCCCTAACCCACCACCAGTCGAAGCCCGACTCCGAATCATCTTCCTCCTCAACCTCACAGAGCTTCACCCAGTGGAAATTCCCTCTCCCTGAGTCACCCATTCTCTCCCACACACAACCTGGATCCGACCAGGATTTTGACGCTGTGGCCATATTTCAGTCCAGCCCAGCGCCGCCGCCGCCGCCCATGTCCTCCACCCGCCTCCAAGAGCTCTTCCATGCAGCAGAGCTCCAACTCAGCATCGGGTCATTTCCGGAGCAGCTCGCAGCACTCCAGCTCCTGGAACGCTCTCTGGTCCCCTACCCGCCATCCGACCCGGAGTGCCCGCCCGAATTGATGCGCGGGTTGGTGCGAAATTTGAAAAACAAAGCGGGGGCAAAACCGGCAACGAAAGTGTTGTTGGCGCTCTGTTTGGCGGAGGCTAACCGCCACGTGGCGGTTGAGGCCGGGGCAGCGTCTGCGGTGGTCGAGACGGCGCTGGAGCTGGAGGATACGGCGGCGGAGCGGGCCCTGGCGGCTCTGGAGTTAATGTGCACTGTGGCGGAGGGGGCGGCGGAGGTGAGGTCCCACGCGCTGGCGGTGCCGGTGATGGTGATGATGATGGGCAGGACGTCGGCTCGGGGGAAGGAATACGCAATAGGGGTGTTGGCGGTTATATACGGTGGCGCATCTGAGGATGAGGCCGCGGAAGCGGTTTCGGCAGCTCCGGCGGAGGAGGTGGCCCGTGCAGTGGAGTTGGCGTTGAAAGGGGATTGTAGTGGTAGGGGAAGGAGGAAAGGGGCCCAATTATTGAAGGCGCTTCAACCAGAAGAAGAGAAAGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

333

Amino Acids

35.21

Weight (kDa)

5.26

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 170 - 326 3.2e-23 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 788
AccB1I GGYRCC 1 cut(s) 754
AccB7I CCANNNNNTGG 2 cut(s) 454, 748
AccBSI CCGCTC 2 cut(s) 155, 679
AccII CGCG 3 cut(s) 516, 746, 860
AccIII TCCGGA 1 cut(s) 427
AclWI GGATC 3 cut(s) 119, 291, 304
AcoI YGGCCR 2 cut(s) 55, 321
AcsI RAATTY 2 cut(s) 251, 529
AcvI CACGTG 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 785
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 5 cut(s) 454, 607, 610, 748, 904
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 5 cut(s) 162, 535, 919, 967, 977
AjnI CCWGG 4 cut(s) 292, 303, 453, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 8 cut(s) 22, 237, 385, 403, 436, 451, 658, 878
AluI AGCT 8 cut(s) 22, 237, 385, 403, 436, 451, 658, 878
Alw21I GWGCWC 3 cut(s) 387, 405, 710
Alw26I GTCTC 2 cut(s) 638, 989
Alw44I GTGCAC 1 cut(s) 706
AlwI GGATC 3 cut(s) 119, 291, 304
AlwNI CAGNNNCTG 2 cut(s) 454, 632
Ama87I CYCGRG 1 cut(s) 792
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 7 cut(s) 55, 321, 618, 681, 855, 894, 954
ApaI GGGCCC 2 cut(s) 685, 958
ApaLI GTGCAC 1 cut(s) 706
ApeKI GCWGC 6 cut(s) 13, 395, 433, 440, 626, 875
ApoI RAATTY 2 cut(s) 251, 529
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 7 cut(s) 346, 516, 580, 652, 748, 842, 973
AspS9I GGNCC 7 cut(s) 469, 681, 682, 738, 895, 954, 955
AsuC2I CCSGG 2 cut(s) 491, 622
AsuHPI GGTGA 5 cut(s) 232, 261, 745, 772, 778
AvaI CYCGRG 1 cut(s) 792
AvaII GGWCC 2 cut(s) 469, 738
BaeGI GKGCMC 4 cut(s) 500, 685, 710, 958
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 4 cut(s) 387, 405, 685, 958
BbrPI CACGTG 1 cut(s) 607
Bbv12I GWGCWC 3 cut(s) 387, 405, 710
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 6 cut(s) 25, 407, 445, 452, 638, 887
BccI CCATC 3 cut(s) 490, 757, 769
BceAI ACGGC 2 cut(s) 663, 684
BciT130I CCWGG 4 cut(s) 294, 305, 455, 686
BciVI GTATCC 1 cut(s) 658
BcnI CCSGG 2 cut(s) 491, 622
BcoDI GTCTC 2 cut(s) 638, 989
BfoI RGCGCY 4 cut(s) 347, 581, 653, 974
BfrI CTTAAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 689
Bme1390I CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
Bme18I GGWCC 2 cut(s) 469, 738
BmeT110I CYCGRG 1 cut(s) 792
BmgT120I GGNCC 7 cut(s) 469, 681, 682, 738, 895, 954, 955
BmiI GGNNCC 7 cut(s) 298, 471, 683, 740, 756, 955, 956
BmrFI CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
BmrI ACTGGG 2 cut(s) 25, 238
BmsI GCATC 3 cut(s) 423, 501, 851
BmuI ACTGGG 2 cut(s) 25, 238
BpmI CTGGAG 4 cut(s) 431, 674, 680, 716
Bpu10I CCTNAGC 2 cut(s) 18, 77
BpuMI CCSGG 2 cut(s) 491, 622
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 785
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 3 cut(s) 621, 684, 858
BsaWI WCCGGW 2 cut(s) 65, 427
BsaXI ACNNNNNCTCC 8 cut(s) 435, 465, 689, 719, 722, 752, 899, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 454, 607, 610, 748, 904
Bse118I RCCGGY 2 cut(s) 556, 757
Bse1I ACTGG 3 cut(s) 31, 190, 244
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 4 cut(s) 294, 305, 455, 686
BseDI CCNNGG 3 cut(s) 621, 684, 858
BseGI GGATG 4 cut(s) 94, 116, 482, 856
BseLI CCNNNNNNNGG 5 cut(s) 454, 607, 610, 748, 904
BseMII CTCAG 4 cut(s) 91, 255, 424, 837
BseNI ACTGG 3 cut(s) 31, 190, 244
BseRI GAGGAG 2 cut(s) 211, 902
BseSI GKGCMC 4 cut(s) 500, 685, 710, 958
BseXI GCAGC 6 cut(s) 25, 407, 445, 452, 638, 887
BseYI CCCAGC 2 cut(s) 9, 340
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 3 cut(s) 516, 746, 860
BshFI GGCC 7 cut(s) 57, 323, 620, 683, 857, 896, 956
BshNI GGYRCC 1 cut(s) 754
BsiHKAI GWGCWC 3 cut(s) 387, 405, 710
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 7 cut(s) 66, 428, 491, 557, 621, 758, 881
BslFI GGGAC 2 cut(s) 455, 724
BslI CCNNNNNNNGG 5 cut(s) 454, 607, 610, 748, 904
BsmAI GTCTC 2 cut(s) 638, 989
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 2 cut(s) 455, 724
BsnI GGCC 7 cut(s) 57, 323, 620, 683, 857, 896, 956
Bso31I GGTCTC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 792
Bsp120I GGGCCC 2 cut(s) 681, 954
Bsp1286I GDGCHC 6 cut(s) 387, 405, 500, 685, 710, 958
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 124, 296
BspANI GGCC 7 cut(s) 57, 323, 620, 683, 857, 896, 956
BspCNI CTCAG 4 cut(s) 90, 256, 423, 838
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 3 cut(s) 516, 746, 860
BspLI GGNNCC 7 cut(s) 298, 471, 683, 740, 756, 955, 956
BspPI GGATC 3 cut(s) 119, 291, 304
BspQI GCTCTTC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 754
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 989
BsrBI CCGCTC 2 cut(s) 155, 679
BsrFI RCCGGY 2 cut(s) 556, 757
BsrI ACTGG 3 cut(s) 31, 190, 244
BssAI RCCGGY 2 cut(s) 556, 757
BssECI CCNNGG 3 cut(s) 621, 684, 858
BssMI GATC 2 cut(s) 124, 296
BssNI GRCGYC 1 cut(s) 785
Bst2UI CCWGG 4 cut(s) 294, 305, 455, 686
Bst4CI ACNGT 4 cut(s) 62, 73, 712, 836
Bst6I CTCTTC 2 cut(s) 392, 981
BstACI GRCGYC 1 cut(s) 785
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 4 cut(s) 438, 500, 681, 750
BstDEI CTNAG 5 cut(s) 18, 77, 264, 410, 846
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 4 cut(s) 94, 116, 482, 856
BstFNI CGCG 3 cut(s) 516, 746, 860
BstH2I RGCGCY 4 cut(s) 347, 581, 653, 974
BstHHI GCGC 7 cut(s) 346, 516, 580, 652, 748, 842, 973
BstKTI GATC 2 cut(s) 127, 299
BstMAI GTCTC 2 cut(s) 638, 989
BstMBI GATC 2 cut(s) 124, 296
BstNI CCWGG 4 cut(s) 294, 305, 455, 686
BstSCI CCNGG 6 cut(s) 292, 303, 453, 489, 620, 684
BstSLI GKGCMC 4 cut(s) 500, 685, 710, 958
BstUI CGCG 3 cut(s) 516, 746, 860
BstV1I GCAGC 6 cut(s) 25, 407, 445, 452, 638, 887
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 7 cut(s) 57, 323, 620, 683, 857, 896, 956
BtgI CCRYGG 1 cut(s) 858
BtsCI GGATG 4 cut(s) 94, 116, 482, 856
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 4 cut(s) 58, 251, 708, 909
Cac8I GCNNGC 4 cut(s) 438, 500, 681, 750
CaiI CAGNNNCTG 2 cut(s) 454, 632
CfoI GCGC 7 cut(s) 346, 516, 580, 652, 748, 842, 973
Cfr10I RCCGGY 2 cut(s) 556, 757
Cfr13I GGNCC 7 cut(s) 469, 681, 682, 738, 895, 954, 955
Cfr42I CCGCGG 1 cut(s) 861
CseI GACGC 2 cut(s) 323, 618
Csp6I GTAC 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 2 cut(s) 361, 392
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 5 cut(s) 18, 77, 264, 410, 846
DpnI GATC 2 cut(s) 126, 298
DpnII GATC 2 cut(s) 124, 296
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 55, 321
Eam1104I CTCTTC 2 cut(s) 392, 981
EarI CTCTTC 2 cut(s) 392, 981
EciI GGCGGA 5 cut(s) 605, 689, 731, 743, 899
Ecl136II GAGCTC 2 cut(s) 385, 403
Eco24I GRGCYC 4 cut(s) 387, 405, 685, 958
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 2 cut(s) 469, 738
Eco53kI GAGCTC 2 cut(s) 385, 403
Eco72I CACGTG 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 792
EcoICRI GAGCTC 2 cut(s) 385, 403
EcoO109I RGGNCCY 3 cut(s) 682, 738, 954
EcoRII CCWGG 4 cut(s) 292, 303, 453, 684
EcoT38I GRGCYC 4 cut(s) 387, 405, 685, 958
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 2 cut(s) 364, 395
FaiI YATR 5 cut(s) 326, 362, 393, 830, 832
FaqI GGGAC 2 cut(s) 455, 724
FatI CATG 2 cut(s) 360, 391
FauI CCCGC 6 cut(s) 380, 486, 507, 509, 538, 672
FokI GGATG 4 cut(s) 81, 103, 469, 863
FriOI GRGCYC 4 cut(s) 387, 405, 685, 958
GlaI GCGC 7 cut(s) 345, 515, 579, 651, 747, 841, 972
GsaI CCCAGC 2 cut(s) 13, 344
GsuI CTGGAG 4 cut(s) 431, 674, 680, 716
HaeII RGCGCY 4 cut(s) 347, 581, 653, 974
HaeIII GGCC 7 cut(s) 57, 323, 620, 683, 857, 896, 956
HapII CCGG 7 cut(s) 66, 428, 491, 557, 621, 758, 881
HgaI GACGC 2 cut(s) 323, 618
HhaI GCGC 7 cut(s) 346, 516, 580, 652, 748, 842, 973
Hin1I GRCGYC 1 cut(s) 785
Hin1II CATG 2 cut(s) 364, 395
Hin6I GCGC 7 cut(s) 344, 514, 578, 650, 746, 840, 971
HinP1I GCGC 7 cut(s) 344, 514, 578, 650, 746, 840, 971
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 48, 203, 209, 266
HpaII CCGG 7 cut(s) 66, 428, 491, 557, 621, 758, 881
HphI GGTGA 5 cut(s) 232, 261, 745, 772, 778
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 5 cut(s) 172, 208, 301, 487, 847
Hpy188III TCNNGA 3 cut(s) 428, 643, 695
Hpy8I GTNNAC 1 cut(s) 708
Hpy99I CGWCG 1 cut(s) 790
HpyAV CCTTC 5 cut(s) 147, 168, 793, 936, 961
HpyCH4III ACNGT 4 cut(s) 62, 73, 712, 836
HpyCH4IV ACGT 2 cut(s) 606, 785
HpyCH4V TGCA 3 cut(s) 395, 708, 902
HpyF3I CTNAG 5 cut(s) 18, 77, 264, 410, 846
HpySE526I ACGT 2 cut(s) 606, 785
Hsp92I GRCGYC 1 cut(s) 785
Hsp92II CATG 2 cut(s) 364, 395
HspAI GCGC 7 cut(s) 344, 514, 578, 650, 746, 840, 971
Kpn2I TCCGGA 1 cut(s) 427
KspI CCGCGG 1 cut(s) 861
Kzo9I GATC 2 cut(s) 124, 296
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 7 cut(s) 160, 408, 430, 456, 655, 676, 883
Lsp1109I GCAGC 6 cut(s) 25, 407, 445, 452, 638, 887
LweI GCATC 3 cut(s) 423, 501, 851
MaeII ACGT 2 cut(s) 606, 785
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 126, 298
MbiI CCGCTC 2 cut(s) 155, 679
MboI GATC 2 cut(s) 124, 296
MboII GAAGA 5 cut(s) 43, 207, 379, 995, 998
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 6 cut(s) 387, 405, 500, 685, 710, 958
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 147, 251, 506, 529, 959
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 197, 275
MmeI TCCRAC 5 cut(s) 125, 195, 324, 430, 510
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 24, 701
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 7 cut(s) 66, 428, 491, 557, 621, 758, 881
MspR9I CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 4 cut(s) 294, 305, 455, 686
MvnI CGCG 3 cut(s) 516, 746, 860
NciI CCSGG 2 cut(s) 491, 622
NdeII GATC 2 cut(s) 124, 296
NlaIII CATG 2 cut(s) 364, 395
NlaIV GGNNCC 7 cut(s) 298, 471, 683, 740, 756, 955, 956
NmuCI GTSAC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 48, 209
PflMI CCANNNNNTGG 2 cut(s) 454, 748
PfoI TCCNGGA 1 cut(s) 453
PleI GAGTC 2 cut(s) 197, 274
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 2 cut(s) 197, 274
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 738
Psp124BI GAGCTC 2 cut(s) 387, 405
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 4 cut(s) 292, 303, 453, 684
PspCI CACGTG 1 cut(s) 607
PspFI CCCAGC 2 cut(s) 9, 340
PspGI CCWGG 4 cut(s) 292, 303, 453, 684
PspN4I GGNNCC 7 cut(s) 298, 471, 683, 740, 756, 955, 956
PspOMI GGGCCC 2 cut(s) 681, 954
PspPI GGNCC 7 cut(s) 469, 681, 682, 738, 895, 954, 955
PspPPI RGGWCCY 1 cut(s) 738
PstNI CAGNNNCTG 2 cut(s) 454, 632
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SacI GAGCTC 2 cut(s) 387, 405
SacII CCGCGG 1 cut(s) 861
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 24, 701
Sau3AI GATC 2 cut(s) 124, 296
Sau96I GGNCC 7 cut(s) 469, 681, 682, 738, 895, 954, 955
SchI GAGTC 2 cut(s) 197, 275
ScrFI CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
SduI GDGCHC 6 cut(s) 387, 405, 500, 685, 710, 958
SfaNI GCATC 3 cut(s) 423, 501, 851
Sfr303I CCGCGG 1 cut(s) 861
SgrBI CCGCGG 1 cut(s) 861
SinI GGWCC 2 cut(s) 469, 738
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 147, 251, 506, 529, 959
SstI GAGCTC 2 cut(s) 387, 405
StyD4I CCNGG 6 cut(s) 292, 303, 453, 489, 620, 684
TaaI ACNGT 4 cut(s) 62, 73, 712, 836
TaiI ACGT 2 cut(s) 609, 788
TaqI TCGA 2 cut(s) 194, 642
TasI AATT 5 cut(s) 147, 251, 506, 529, 959
TauI GCSGC 9 cut(s) 155, 349, 352, 355, 358, 674, 692, 728, 860
TfiI GAWTC 2 cut(s) 48, 209
Tru1I TTAA 2 cut(s) 24, 701
Tru9I TTAA 2 cut(s) 24, 701
TscAI CASTG 4 cut(s) 65, 251, 715, 909
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 6 cut(s) 13, 395, 433, 440, 626, 875
Tsp45I GTSAC 1 cut(s) 267
TspRI CASTG 4 cut(s) 65, 251, 715, 909
Van91I CCANNNNNTGG 2 cut(s) 454, 748
Vha464I CTTAAG 1 cut(s) 23
VneI GTGCAC 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 469, 738
XapI RAATTY 2 cut(s) 251, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.