RchiOBHm_Chr7g0183291

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009576
Physical Location & Seq
Reverse (-)
4227829 .. 4234178
6350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16352

Sequence Viewer

Length: 4407 bp
ATGTATGGCCAAGCTAATTATGGTGCGCCGTTCGGCCAGGGTCAGCCACCGATGCCACCTGCAAACCAACAGGGTCCGCCACCCCCTTCCCTTCAGTTCCAACCAGGCTCTCCGGCAGCACTGCCAAATGTAGTTCAGCAGGCTATATCTGCAGTCCCACCTCAGATAGGTCAGCCGGGTCCTTACTTATATCAGCACGGTTCTGTTGCCCCACCTCCCGCTGCTCCGTTCAGTGGGATGCCAAATACAGGTCAATCTTACGGACACGCCAATCCAACAGTCCATGGAAGCACATGGCATAACCTGCAACATGCTTCAGCAACAGGAAACCAGAATTTCCAACCGATTCATCCACCAGCACTTGTGACTCCTCATGCTTTGTCTCCTTACCCAAACATGTCACAGGCTGCAATACCACATGGAGCATTACCTCCTCCTCCTCCTCCTCCTCTCCCGTCGACTAATACTACTTCTGGTTGTGCTGCACAAGGACCAGCATCGTATAAAGCTTTGTCTCCAGCACAACCACAGGCCGGTCTTCCGCATGAGGGCTCCCATAATTTTGAAGGTGGAAGTGAGTGTGAAGCAGGTTCTCTAGCTAGAGATGGAGTATCATCAAATGGAAGTGTGATGTTGGATTTTTCTTCACCTCCACCTAAGCCATCAGATAAGATTGATTCTCTCTGCCAGCTTACTGCTATGAATGAAGGGAAAATTGAATCACCATTGAAGTCTTCGTGGATTGACTCTTCATCTCAACCTGACCATTTTATCGTCTCTTCAGGTTGTAGCTTGCCTGCTGATTCTGACATGGAGATGGAAGATGATATCACCTTGTCTGACGGAGATCAGGAAGTTCATGATTCATCTAACACTCTAAACCGCAAGTCTGATGTCAGTCATGGGGAGCTTGATGTCAAAAAGCACCTACATGGAGCACAGAGTTCACTAGGATGGACTGCAGCCCAGGGTGTCTCATGTGAAAATGTGTCGTCCTCTTTGTCCCAATGCCAATTGATGATTGAAAAGGCGCCATCTAGAGTTGATATTTATTTAACTGAAGCTTCTGAATCCCCTTTGGCAAGTGAGCGAGATAAAACTTCTATTCCCATAGCTGATGATCAGAACACACTTGATGCTTCTGCAGCAGCTGAGGCAATAAATTCAGACGGGTTTTCTAACCAGATCACCGCAGTTAACAGTCCATTTAGACTTCTACAAGACTATACTTCTGAAAACAGCTCAGAAAATGATCCTCATACTTTCTTTGAAGATGCTAATGTTGTTATAGCTTCATCATCAGTTACAGCTAGTGTTAAAAGTAGCCATAAAGATGCTGGGTCTCAATTTGCGACAGGATCTAAGAGCCCGTGCATGACTGATAAAATGTCTAGTCTGCAATATGAATCCAGGAGGTCCAAATTTTCCTTGGATACAAAAAAAGAGGTTAAGGGTACCGGTACAACATTAATCATTAACAGTCATGAGGCCTTCCAGGGAAAAGAGGCGTTGAGTGGTGCTCCTATTGATATAGTTTCCAAAAGGCATGAGTCTCAGGAGGGGCAAAAGACCAAGTCTGAATCTGTTCTGCCGAAGGTGGATGAGTATGGGAGATTGGTCAGAGAAGGTTCCACTGACAGTAACTCTGATGGTTCACGTTATAATAAGAGGCGTAAAAGAGGCAGAAGCAGAAGCCGCAGCCACAGTCGCAGCCGTATCCGGAGCCGCAGCCACAGCCGCAGCCGTATCCGGAGCCGCAGCCGCAGCCGCAGTTGTAGCCGGTCTCCTCTTGACAGCAGGAGGAGGAGGAGGAGTCCTCGGAGGAGAAGAGAGAAGCGAAACCGTTCTCCCAGTTGGTCTTCTAGGAATCATAGAAGCAGGAGCAGGTCTCCCACTTTTAGGCGTGCAGGTGATTTCAGAGATGAAAATAAGAGACAGGACAGGCGCCACATTCCAGAATGCTTTGACTTCCTTAGAGGCAGATGCTTCCGTGGAGCATACTGTCGGTATATGCACCGTGCACATGACCAAAGTGATGGTTCATGGCGCCATAGGAGCAACCAAAAGCATCTAGAAGTTCAGCCTAGTGTGAAGAACTCTAGGATTAAGGAAGAGATTGAAGATAGCTCTGACATGAATCCGCATGGTGAAATCAAAGGTCAAGAGATGCAACAATTTCAAGATGTGGCCGCAAAAGATGGTCAGTTTATTGATCCTGATGAAAATGATTGTGAGAGCTCTAGAGTGACAGCTGCTTCAATGCAACTGAAACAAAATTTTCAAGTAAAGTCTGAAGGAACCATCGGTCACAATCCTGAATCTCACCAGCCATCCCCTCAGATGTTCAGCTATGCTGATAATATGAAGTCGTGGGGTGATACTTCTCAGGCTATTGAACAATCTCGAAGCAATAATTCTGCAGGACAGCTTCAGAAGGCTTATTTTTCGTCTCAGCAGATGGAAGCCTCTCTCATATCTGATTCACCACCAGATCGAGCATCCAAGATTTCTCCAAATAAGGTTTCTAGTATTGAACATGCAACAGATGCACTCTTATCAACTCATTCACGTCCCACTGAATGTTCTAATACTCAACCACTTTCATCAGGACAGTTTTTATCACAGTATATGGCTCCTAAAGAGTCACCTCTTCCCAGTTTTTCTGCTGCAAATAGTCCATATCCATCACAGCTGCCTCCTCCTCCTCCTTCACTATCACAAGGTACCAGTGTTGCTCATGTGCCACAGGTGCATAGGGACTACAACCAGAGGCCACCCTATCCAGTTCAGTCCATTCCTACAGGAATGATTCATTCTTATCAAGGTCCCTTACCCAACCAACCTGCCCAATTCTCGGTGTCACAAGATTCACCTTGGACATCCTTGCCGCCGCCACCTCCACGACCACCGTATGATTCATCTTTAAATGCAGGAACTGCTGCACGAGGTGCTTCTTCACAATTTCAGCAGAATAACTTGGCTCCAAGGAGTGACTTCAGTTCTCAGAGTTCTATGAGGCCTTACGGCTCTTACCCAACTGAATCCCCTCATTCTAAGGGTGACTTTCTGCATCAGATGTACCCTACATTGTCAGACCTTCCTCATCCTCTACCGAACAGGGAAGATTTCGGATCAGGCAATCCATCAAATCAACCTTTTGGGGGCCCTGGTCATATGAGAGAAGATCGCTTTACACATGCTCCTGTGCAGGATGTAAATCCTTCACATTCTTTTGCTCAGGGACACCTACACCCTCAACCTGCACCTTCTTCACAGGAGTTAACAAGGATCAAAATGCAAAATTTCTCTGGTGACAATTTTCCATCTGGAGAACTTTTAAATTCATCATCACAAATTCATCCTCATTCACATAACCAACAGCCAAGCTATGGTGTGCAATACTCTGTTGGTGATAGTATTTTGGGTGTGCCTGGGAAGACTGGTGTACAACACCCTGTAGGTGGAAGCATTTTGGGTTTGCCTGGGAAAGATGGCCCCATGTCCCGATACCCTCCAGATATACTGGACAGGAGTCAGTTTTCTCAAGTTCCTGATTTTGGGGCATCTAGAATTCAAACACATCATAATCCTTACGCAGCTACTTTTGAGCAGCCTGTAAGCTCCAAATTCAGTTCTAACATTCTCATTCAAGAAAAGAATGCTCCCGGTGGTAAGATGTTTGATACACCGGTCCAAGTCCCAGTTGATGGGCAAGGTGTTGGCAGTGCTGGGTCAAGACAGACAACTTCCTCGCCGAGTTCTGCTAGAGCTGGTGGTCAGCTTTTGCCCAAGTCAGATTGTGAGCAGTATGATCCACTTTTTGACAGCATTGAGCCATCAGGAAATCCACTCAATAAACATGATCACAGCCAAAAGCATATACCCACCAGTGATTCAAATATGATGGTGAGGCTCAGTGGTTCTTGTGAGCCATTAGATGTAGAAGAGAACAACAAACATACAGAGGTTCGCCCTGTTGCTTCGGCTACATCTCTGGATAATGACGGCTATGGTGAGACAGCAGATGCAGAAGTGGGTGTTGTTGAGGATGAGAGTCTTAGTAATGATGATGGTGCAGCAAACATGGCTGTAGGAGAGATGGAGATTGATCAGGTGAAATCTGGAGGGAAGAGCAAGAAGAAAAAGGATTCCAGATCAACGAGACTTTTCAAGAGTGCTGTTGCCGATTTTGTAAAGGATCTTCTGAAGCCGTCATGGCGGCAGGGTAATATGAGCAAAGAAGCTTTCAAGACCATTGTCAAAAAGACTGTTGATAAGGTTTCTGGAGCCATGAAGAGCCACCAGATACCCAAGTCCGAAGCAAAGATAAATCACTACATTGACTCGTCTCAGCGGAAACTGACAAAGCTTGTGATGGGTTATGTTGATAAGTATGTCAAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

1468

Amino Acids

159.75

Weight (kDa)

7.53

Isoelectric Point (pI)

69.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 1384 - 1452 3.8e-06 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1662
AarI CACCTGC 2 cut(s) 67, 1898
Acc36I ACCTGC 7 cut(s) 67, 312, 578, 1875, 1898, 2851, 3268
Acc65I GGTACC 2 cut(s) 1454, 2723
AccB1I GGYRCC 5 cut(s) 1030, 1454, 1944, 2046, 2723
AccB7I CCANNNNNTGG 2 cut(s) 3389, 3707
AccI GTMKAC 1 cut(s) 458
AccIII TCCGGA 2 cut(s) 1719, 1749
AclWI GGATC 7 cut(s) 1247, 1366, 2207, 3139, 3296, 3806, 4206
AcoI YGGCCR 3 cut(s) 7, 34, 2187
AcsI RAATTY 9 cut(s) 334, 1162, 1421, 2275, 3301, 3340, 3354, 3570, 3626
AcuI CTGAAG 8 cut(s) 77, 300, 765, 1080, 2313, 2414, 2980, 4226
AcyI GRCGYC 3 cut(s) 1031, 1945, 2047
AdeI CACNNNGTG 1 cut(s) 2948
AfaI GTAC 5 cut(s) 1456, 1462, 2725, 3080, 3447
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 2 cut(s) 1457, 3688
AjiI CACGTC 1 cut(s) 2570
AjnI CCWGG 8 cut(s) 36, 103, 966, 1409, 1494, 3166, 3430, 3481
AjuI GAANNNNNNNTTGG 2 cut(s) 2506, 2538
Alw21I GWGCWC 4 cut(s) 940, 1522, 2023, 2240
Alw44I GTGCAC 1 cut(s) 2019
AlwI GGATC 7 cut(s) 1247, 1366, 2207, 3139, 3296, 3806, 4206
AlwNI CAGNNNCTG 2 cut(s) 1151, 2936
Aor13HI TCCGGA 2 cut(s) 1719, 1749
AoxI GGCC 9 cut(s) 7, 34, 531, 1488, 2187, 2771, 3017, 3163, 3493
ApaI GGGCCC 1 cut(s) 3167
ApaLI GTGCAC 1 cut(s) 2019
ApoI RAATTY 9 cut(s) 334, 1162, 1421, 2275, 3301, 3340, 3354, 3570, 3626
AseI ATTAAT 1 cut(s) 1469
AsiGI ACCGGT 2 cut(s) 1457, 3688
Asp700I GAANNNNTTC 2 cut(s) 1584, 1843
Asp718I GGTACC 2 cut(s) 1454, 2723
AspLEI GCGC 4 cut(s) 28, 1033, 1947, 2049
AspS9I GGNCC 9 cut(s) 74, 179, 491, 1416, 2825, 3163, 3164, 3494, 3691
AsuC2I CCSGG 2 cut(s) 177, 3666
AvaII GGWCC 6 cut(s) 74, 179, 491, 1416, 2825, 3691
BaeGI GKGCMC 2 cut(s) 2023, 3167
BaeI ACNNNNGTAYC 6 cut(s) 2715, 2748, 3675, 3708, 4298, 4331
BalI TGGCCA 1 cut(s) 9
BanI GGYRCC 5 cut(s) 1030, 1454, 1944, 2046, 2723
BanII GRGCYC 4 cut(s) 554, 1370, 2240, 3167
BarI GAAGNNNNNNTAC 2 cut(s) 4185, 4217
BauI CACGAG 1 cut(s) 2943
BbsI GAAGAC 4 cut(s) 530, 726, 1851, 3443
Bbv12I GWGCWC 4 cut(s) 940, 1522, 2023, 2240
BbvCI CCTCAGC 1 cut(s) 1152
BceAI ACGGC 6 cut(s) 13, 1698, 1728, 3040, 4021, 4195
BciT130I CCWGG 8 cut(s) 38, 105, 968, 1411, 1496, 3168, 3432, 3483
BciVI GTATCC 3 cut(s) 1426, 1727, 1757
BclI TGATCA 3 cut(s) 1120, 3862, 4108
BcnI CCSGG 2 cut(s) 177, 3666
BfmI CTRYAG 7 cut(s) 150, 960, 1143, 2418, 2799, 3456, 4089
BfoI RGCGCY 3 cut(s) 1034, 1948, 2050
BfuAI ACCTGC 7 cut(s) 67, 312, 578, 1875, 1898, 2851, 3268
BfuI GTATCC 3 cut(s) 1426, 1727, 1757
BglI GCCNNNNNGGC 1 cut(s) 4216
Bme18I GGWCC 6 cut(s) 74, 179, 491, 1416, 2825, 3691
BmgBI CACGTC 1 cut(s) 2570
BmgT120I GGNCC 9 cut(s) 74, 179, 491, 1416, 2825, 3163, 3164, 3494, 3691
BmrI ACTGGG 3 cut(s) 1845, 2649, 3695
BmuI ACTGGG 3 cut(s) 1845, 2649, 3695
BoxI GACNNNNGTC 2 cut(s) 3531, 4256
BpiI GAAGAC 4 cut(s) 530, 726, 1851, 3443
BplI GAGNNNNNCTC 6 cut(s) 1504, 1536, 1801, 1833, 1873, 1905
BpmI CTGGAG 5 cut(s) 501, 3348, 3498, 4143, 4305
Bpu10I CCTNAGC 3 cut(s) 657, 1152, 3237
BpuEI CTTGAG 1 cut(s) 3528
BpuMI CCSGG 2 cut(s) 177, 3666
BsaBI GATNNNNATC 1 cut(s) 3216
BsaHI GRCGYC 3 cut(s) 1031, 1945, 2047
BsaI GGTCTC 3 cut(s) 1347, 1788, 1893
BsaWI WCCGGW 4 cut(s) 1457, 1719, 1749, 3688
BsaXI ACNNNNNCTCC 4 cut(s) 1798, 1828, 3184, 3214
Bse118I RCCGGY 4 cut(s) 533, 1457, 1779, 3688
Bse1I ACTGG 8 cut(s) 1851, 2655, 2727, 2783, 3445, 3528, 3701, 3888
Bse8I GATNNNNATC 1 cut(s) 3216
BseAI TCCGGA 2 cut(s) 1719, 1749
BseBI CCWGG 8 cut(s) 38, 105, 968, 1411, 1496, 3168, 3432, 3483
BseJI GATNNNNATC 1 cut(s) 3216
BseNI ACTGG 8 cut(s) 1851, 2655, 2727, 2783, 3445, 3528, 3701, 3888
BseSI GKGCMC 2 cut(s) 2023, 3167
BseYI CCCAGC 2 cut(s) 1337, 3728
BsgI GTGCAG 6 cut(s) 468, 1926, 2925, 3227, 3246, 4095
BshFI GGCC 9 cut(s) 9, 36, 533, 1490, 2189, 2773, 3019, 3165, 3495
BshNI GGYRCC 5 cut(s) 1030, 1454, 1944, 2046, 2723
BshTI ACCGGT 2 cut(s) 1457, 3688
BsiHKAI GWGCWC 4 cut(s) 940, 1522, 2023, 2240
BsiSI CCGG 9 cut(s) 113, 176, 534, 1458, 1720, 1750, 1780, 3666, 3689
BslFI GGGAC 8 cut(s) 140, 988, 2556, 2771, 2811, 3255, 3487, 3683
BsmBI CGTCTC 3 cut(s) 781, 2454, 4353
BsmFI GGGAC 8 cut(s) 140, 988, 2556, 2771, 2811, 3255, 3487, 3683
BsmI GAATGC 2 cut(s) 1964, 3664
BsnI GGCC 9 cut(s) 9, 36, 533, 1490, 2189, 2773, 3019, 3165, 3495
Bso31I GGTCTC 3 cut(s) 1347, 1788, 1893
Bsp120I GGGCCC 1 cut(s) 3163
Bsp1286I GDGCHC 7 cut(s) 554, 940, 1370, 1522, 2023, 2240, 3167
Bsp13I TCCGGA 2 cut(s) 1719, 1749
Bsp1407I TGTACA 1 cut(s) 3445
Bsp19I CCATGG 1 cut(s) 283
BspANI GGCC 9 cut(s) 9, 36, 533, 1490, 2189, 2773, 3019, 3165, 3495
BspEI TCCGGA 2 cut(s) 1719, 1749
BspHI TCATGA 2 cut(s) 859, 1483
BspMAI CTGCAG 4 cut(s) 154, 964, 1147, 2422
BspMI ACCTGC 7 cut(s) 67, 312, 578, 1875, 1898, 2851, 3268
BspPI GGATC 7 cut(s) 1247, 1366, 2207, 3139, 3296, 3806, 4206
BspQI GCTCTTC 2 cut(s) 4124, 4289
BspT107I GGYRCC 5 cut(s) 1030, 1454, 1944, 2046, 2723
BspTNI GGTCTC 3 cut(s) 1347, 1788, 1893
BsrFI RCCGGY 4 cut(s) 533, 1457, 1779, 3688
BsrGI TGTACA 1 cut(s) 3445
BsrI ACTGG 8 cut(s) 1851, 2655, 2727, 2783, 3445, 3528, 3701, 3888
BssAI RCCGGY 4 cut(s) 533, 1457, 1779, 3688
BssNI GRCGYC 3 cut(s) 1031, 1945, 2047
BssSI CACGAG 1 cut(s) 2943
BssT1I CCWWGG 4 cut(s) 283, 1428, 2873, 2984
Bst2BI CACGAG 1 cut(s) 2943
Bst2UI CCWGG 8 cut(s) 38, 105, 968, 1411, 1496, 3168, 3432, 3483
Bst6I CTCTTC 8 cut(s) 754, 784, 1822, 2106, 2655, 3939, 4124, 4289
BstACI GRCGYC 3 cut(s) 1031, 1945, 2047
BstAPI GCANNNNNTGC 4 cut(s) 304, 2546, 2936, 2948
BstAUI TGTACA 1 cut(s) 3445
BstC8I GCNNGC 5 cut(s) 141, 689, 794, 798, 1905
BstDSI CCRYGG 2 cut(s) 283, 1990
BstENI CCTNNNNNAGG 1 cut(s) 165
BstH2I RGCGCY 3 cut(s) 1034, 1948, 2050
BstHHI GCGC 4 cut(s) 28, 1033, 1947, 2049
BstNI CCWGG 8 cut(s) 38, 105, 968, 1411, 1496, 3168, 3432, 3483
BstNSI RCATGY 4 cut(s) 314, 400, 2540, 3200
BstPAI GACNNNNGTC 2 cut(s) 3531, 4256
BstSFI CTRYAG 7 cut(s) 150, 960, 1143, 2418, 2799, 3456, 4089
BstSLI GKGCMC 2 cut(s) 2023, 3167
BstV2I GAAGAC 4 cut(s) 530, 726, 1851, 3443
BstX2I RGATCY 2 cut(s) 1358, 4198
BstXI CCANNNNNNTGG 1 cut(s) 2036
BstYI RGATCY 2 cut(s) 1358, 4198
BsuI GTATCC 3 cut(s) 1426, 1727, 1757
BsuRI GGCC 9 cut(s) 9, 36, 533, 1490, 2189, 2773, 3019, 3165, 3495
BtgI CCRYGG 2 cut(s) 283, 1990
BtrI CACGTC 1 cut(s) 2570
BtsI GCAGTG 2 cut(s) 119, 3730
BtsIMutI CAGTG 8 cut(s) 119, 238, 1632, 2574, 2734, 3730, 3895, 3922
BveI ACCTGC 7 cut(s) 67, 312, 578, 1875, 1898, 2851, 3268
Cac8I GCNNGC 5 cut(s) 141, 689, 794, 798, 1905
CaiI CAGNNNCTG 2 cut(s) 1151, 2936
CciI TCATGA 2 cut(s) 859, 1483
CfoI GCGC 4 cut(s) 28, 1033, 1947, 2049
Cfr10I RCCGGY 4 cut(s) 533, 1457, 1779, 3688
Cfr13I GGNCC 9 cut(s) 74, 179, 491, 1416, 2825, 3163, 3164, 3494, 3691
Csp6I GTAC 5 cut(s) 1455, 1461, 2724, 3079, 3446
CspAI ACCGGT 2 cut(s) 1457, 3688
CviQI GTAC 5 cut(s) 1455, 1461, 2724, 3079, 3446
DinI GGCGCC 3 cut(s) 1032, 1946, 2048
DraI TTTAAA 2 cut(s) 2925, 3339
DraIII CACNNNGTG 1 cut(s) 2948
EaeI YGGCCR 3 cut(s) 7, 34, 2187
Eam1104I CTCTTC 8 cut(s) 754, 784, 1822, 2106, 2655, 3939, 4124, 4289
EarI CTCTTC 8 cut(s) 754, 784, 1822, 2106, 2655, 3939, 4124, 4289
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 2238
Eco130I CCWWGG 4 cut(s) 283, 1428, 2873, 2984
Eco147I AGGCCT 2 cut(s) 1490, 3019
Eco24I GRGCYC 4 cut(s) 554, 1370, 2240, 3167
Eco31I GGTCTC 3 cut(s) 1347, 1788, 1893
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 6 cut(s) 74, 179, 491, 1416, 2825, 3691
Eco53kI GAGCTC 1 cut(s) 2238
Eco57I CTGAAG 8 cut(s) 77, 300, 765, 1080, 2313, 2414, 2980, 4226
EcoICRI GAGCTC 1 cut(s) 2238
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 4 cut(s) 179, 2825, 3163, 3164
EcoRI GAATTC 1 cut(s) 3570
EcoRII CCWGG 8 cut(s) 36, 103, 966, 1409, 1494, 3166, 3430, 3481
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 4 cut(s) 283, 1428, 2873, 2984
EcoT38I GRGCYC 4 cut(s) 554, 1370, 2240, 3167
EgeI GGCGCC 3 cut(s) 1032, 1946, 2048
EheI GGCGCC 3 cut(s) 1032, 1946, 2048
ErhI CCWWGG 4 cut(s) 283, 1428, 2873, 2984
Esp3I CGTCTC 3 cut(s) 781, 2454, 4353
FalI AAGNNNNNCTT 2 cut(s) 3047, 3079
FaqI GGGAC 8 cut(s) 140, 988, 2556, 2771, 2811, 3255, 3487, 3683
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 3174
FbaI TGATCA 3 cut(s) 1120, 3862, 4108
FblI GTMKAC 1 cut(s) 458
FriOI GRGCYC 4 cut(s) 554, 1370, 2240, 3167
GlaI GCGC 4 cut(s) 27, 1032, 1946, 2048
GsaI CCCAGC 2 cut(s) 1341, 3732
GsuI CTGGAG 5 cut(s) 501, 3348, 3498, 4143, 4305
HaeII RGCGCY 3 cut(s) 1034, 1948, 2050
HaeIII GGCC 9 cut(s) 9, 36, 533, 1490, 2189, 2773, 3019, 3165, 3495
HapII CCGG 9 cut(s) 113, 176, 534, 1458, 1720, 1750, 1780, 3666, 3689
HhaI GCGC 4 cut(s) 28, 1033, 1947, 2049
Hin1I GRCGYC 3 cut(s) 1031, 1945, 2047
Hin6I GCGC 4 cut(s) 26, 1031, 1945, 2047
HinP1I GCGC 4 cut(s) 26, 1031, 1945, 2047
HincII GTYRAC 3 cut(s) 459, 1198, 3282
HindII GTYRAC 3 cut(s) 459, 1198, 3282
HindIII AAGCTT 4 cut(s) 507, 1062, 4242, 4367
HpaI GTTAAC 2 cut(s) 1198, 3282
HpaII CCGG 9 cut(s) 113, 176, 534, 1458, 1720, 1750, 1780, 3666, 3689
Hpy166II GTNNAC 7 cut(s) 459, 947, 1198, 1655, 2021, 3282, 3446
Hpy8I GTNNAC 7 cut(s) 459, 947, 1198, 1655, 2021, 3282, 3446
Hpy99I CGWCG 1 cut(s) 460
HpyCH4IV ACGT 2 cut(s) 1657, 2569
HpySE526I ACGT 2 cut(s) 1657, 2569
Hsp92I GRCGYC 3 cut(s) 1031, 1945, 2047
HspAI GCGC 4 cut(s) 26, 1031, 1945, 2047
KasI GGCGCC 3 cut(s) 1030, 1944, 2046
Kpn2I TCCGGA 2 cut(s) 1719, 1749
KpnI GGTACC 2 cut(s) 1458, 2727
Ksp22I TGATCA 3 cut(s) 1120, 3862, 4108
KspAI GTTAAC 2 cut(s) 1198, 3282
LguI GCTCTTC 2 cut(s) 4124, 4289
MaeII ACGT 2 cut(s) 1657, 2569
MfeI CAATTG 1 cut(s) 1013
MflI RGATCY 2 cut(s) 1358, 4198
MhlI GDGCHC 7 cut(s) 554, 940, 1370, 1522, 2023, 2240, 3167
MlsI TGGCCA 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 9
Mly113I GGCGCC 3 cut(s) 1031, 1945, 2047
MlyI GAGTC 8 cut(s) 361, 740, 1559, 1822, 2651, 3541, 4063, 4337
MmeI TCCRAC 4 cut(s) 124, 299, 364, 615
Mox20I TGGCCA 1 cut(s) 9
MroI TCCGGA 2 cut(s) 1719, 1749
MroXI GAANNNNTTC 2 cut(s) 1584, 1843
MscI TGGCCA 1 cut(s) 9
MslI CAYNNNNRTG 4 cut(s) 815, 930, 952, 1332
Msp20I TGGCCA 1 cut(s) 9
MspA1I CMGCKG 5 cut(s) 221, 1151, 2252, 2692, 4354
MspI CCGG 9 cut(s) 113, 176, 534, 1458, 1720, 1750, 1780, 3666, 3689
MunI CAATTG 1 cut(s) 1013
Mva1269I GAATGC 2 cut(s) 1964, 3664
MvaI CCWGG 8 cut(s) 38, 105, 968, 1411, 1496, 3168, 3432, 3483
NarI GGCGCC 3 cut(s) 1031, 1945, 2047
NciI CCSGG 2 cut(s) 177, 3666
NcoI CCATGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 3174
NmeAIII GCCGAG 1 cut(s) 3780
NmuCI GTSAC 9 cut(s) 364, 399, 2245, 2306, 2643, 2859, 2990, 3059, 3311
NspI RCATGY 4 cut(s) 314, 400, 2540, 3200
PagI TCATGA 2 cut(s) 859, 1483
PaqCI CACCTGC 2 cut(s) 67, 1898
PasI CCCWGGG 1 cut(s) 967
PceI AGGCCT 2 cut(s) 1490, 3019
PciI ACATGT 1 cut(s) 396
PciSI GCTCTTC 2 cut(s) 4124, 4289
PctI GAATGC 2 cut(s) 1964, 3664
PdmI GAANNNNTTC 2 cut(s) 1584, 1843
PflFI GACNNNGTC 1 cut(s) 1573
PflMI CCANNNNNTGG 2 cut(s) 3389, 3707
PfoI TCCNGGA 1 cut(s) 1409
PinAI ACCGGT 2 cut(s) 1457, 3688
PleI GAGTC 8 cut(s) 361, 740, 1558, 1821, 2650, 3540, 4062, 4337
PluTI GGCGCC 3 cut(s) 1034, 1948, 2050
PpsI GAGTC 8 cut(s) 361, 740, 1558, 1821, 2650, 3540, 4062, 4337
PpuMI RGGWCCY 2 cut(s) 179, 2825
PscI ACATGT 1 cut(s) 396
PshAI GACNNNNGTC 2 cut(s) 3531, 4256
PshBI ATTAAT 1 cut(s) 1469
PsiI TTATAA 1 cut(s) 1662
Psp124BI GAGCTC 1 cut(s) 2240
Psp5II RGGWCCY 2 cut(s) 179, 2825
Psp6I CCWGG 8 cut(s) 36, 103, 966, 1409, 1494, 3166, 3430, 3481
PspFI CCCAGC 2 cut(s) 1337, 3728
PspGI CCWGG 8 cut(s) 36, 103, 966, 1409, 1494, 3166, 3430, 3481
PspOMI GGGCCC 1 cut(s) 3163
PspPI GGNCC 9 cut(s) 74, 179, 491, 1416, 2825, 3163, 3164, 3494, 3691
PspPPI RGGWCCY 2 cut(s) 179, 2825
PstI CTGCAG 4 cut(s) 154, 964, 1147, 2422
PstNI CAGNNNCTG 2 cut(s) 1151, 2936
PsuI RGATCY 2 cut(s) 1358, 4198
PsyI GACNNNGTC 1 cut(s) 1573
PvuII CAGCTG 3 cut(s) 1151, 2252, 2692
RsaI GTAC 5 cut(s) 1456, 1462, 2725, 3080, 3447
RsaNI GTAC 5 cut(s) 1455, 1461, 2724, 3079, 3446
RseI CAYNNNNRTG 4 cut(s) 815, 930, 952, 1332
SacI GAGCTC 1 cut(s) 2240
SalI GTCGAC 1 cut(s) 457
SapI GCTCTTC 2 cut(s) 4124, 4289
Sau96I GGNCC 9 cut(s) 74, 179, 491, 1416, 2825, 3163, 3164, 3494, 3691
SchI GAGTC 8 cut(s) 361, 740, 1559, 1822, 2651, 3541, 4063, 4337
SduI GDGCHC 7 cut(s) 554, 940, 1370, 1522, 2023, 2240, 3167
SfcI CTRYAG 7 cut(s) 150, 960, 1143, 2418, 2799, 3456, 4089
SfoI GGCGCC 3 cut(s) 1032, 1946, 2048
SinI GGWCC 6 cut(s) 74, 179, 491, 1416, 2825, 3691
SmiMI CAYNNNNRTG 4 cut(s) 815, 930, 952, 1332
SmlI CTYRAG 1 cut(s) 3543
SmoI CTYRAG 1 cut(s) 3543
SseBI AGGCCT 2 cut(s) 1490, 3019
SspDI GGCGCC 3 cut(s) 1030, 1944, 2046
SstI GAGCTC 1 cut(s) 2240
StuI AGGCCT 2 cut(s) 1490, 3019
StyI CCWWGG 4 cut(s) 283, 1428, 2873, 2984
TaiI ACGT 2 cut(s) 1660, 2572
TaqI TCGA 3 cut(s) 458, 2404, 2494
TaqII GACCGA 1 cut(s) 2294
TatI WGTACW 1 cut(s) 3445
TscAI CASTG 8 cut(s) 126, 238, 1639, 2581, 2734, 3730, 3895, 3922
TseFI GTSAC 9 cut(s) 364, 399, 2245, 2306, 2643, 2859, 2990, 3059, 3311
Tsp45I GTSAC 9 cut(s) 364, 399, 2245, 2306, 2643, 2859, 2990, 3059, 3311
TspGWI ACGGA 4 cut(s) 216, 276, 858, 1979
TspRI CASTG 8 cut(s) 126, 238, 1639, 2581, 2734, 3730, 3895, 3922
Tth111I GACNNNGTC 1 cut(s) 1573
Van91I CCANNNNNTGG 2 cut(s) 3389, 3707
VneI GTGCAC 1 cut(s) 2019
VpaK11BI GGWCC 6 cut(s) 74, 179, 491, 1416, 2825, 3691
VspI ATTAAT 1 cut(s) 1469
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 9 cut(s) 334, 1162, 1421, 2275, 3301, 3340, 3354, 3570, 3626
XbaI TCTAGA 4 cut(s) 1037, 2071, 2240, 3566
XceI RCATGY 4 cut(s) 314, 400, 2540, 3200
XcmI CCANNNNNNNNNTGG 3 cut(s) 17, 1334, 1426
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 2 cut(s) 1584, 1843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.