Rw7G004740

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009576
Physical Location & Seq
Reverse (-)
3923697 .. 3929400
5704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004740.1

Sequence Viewer

Length: 4410 bp
ATGTATGGCCAAGCTAATTATGGTGCGCCGTTTGGCCAGGGTCAGCCGCCGATGCCACCTGCAAACCCACAGGGTCCGCCTCCACCTTCCCTTCAGTTCCAACAAGGCTCTCCGGCACCACTGCCAAATGTAGTTCAGCAGGCTATATCTGCAGTCCCACCTCAGATAGGTCAGCCGGGTCCTTACTTATATCAGGGTTCTGTTGCCCCACCTCCCGCTGCTCCGTTCAGTGGGATGCCAAATACAGGTCAATCTTACGGACACGCCAATCCAGCAGTCCATGGAAGCACATGGCATAACGTGCAACATGCTTCAGCAACAGGAAACCAGAATTTCCAACCGATTCATCCACCAGCACTTGTGACTCCTCATGCTTTGTCTCCTTACCCAAACATGTCACAGGCTGCAATACCACATGGAGCATTACCTCCTCCTCCTCCTCCTCCTCTCCCGTCGACTAATACTACTTCTGGTTGTGCTGCACAAGGACCAGCATCGTATAAAGCTTTGTCTCCAGCACAACCACAGGCTGGTCTTCCGCATGAGGGCTCCCATAATTTTGAAGGTGGAAGTGAGTGTGAAGCAGGTTCTCTAGCTAGAGATGGAGTATCATCAAATGGAAGTGTGATGTTGGATTTTTCTTCACCTCCACCTAAGCCATCAGATAAGATTGATTCTCTCTGCCAGCTTACTGCTATGAATGAAGGGAAAATTGAATCACCATTGAAGTCTTCGTGGATTGACTCTTCATCTCAACCTGACCATTTTATCATCTCTTCAGGTTATAGCTTGCCTGCTGATTCTGACATGGAGATGGAAGATGATATCACCTTGTCTGACGGAGATCAGGAAGTTCATGATTCATCTAACACTCTAAACCGCAAGTCTGATGTCAGTCATGGGGAGCTTGATGTCAAAAAGCACCTACATGGAGCACAGAGTTCACTAGGATGGACTGCAGCCCAGGGTGTCTCATGTGAAAATGTGTCGTCCTCTTTGTCCCAATGCCAATTGATGATTGAAAAGGCGCCATCTAGAGTTGATATTTATTCAACTGAAGCTTCTGAATCCCCTTTGGCAAGTGAGCGAGATAAAACTTCTATTCCCATAGCTGATGATCAGAACACACTTGATGCTTCTGCAGCAGCTGAGGCAATAAATTCAGACGGGTTTTCTAACCAGATCACCGCAGTTAACAGTCCATTTAGACTTCTACAAGACTATACTTCTGAAAACAGCTCAGAAAATGATCCTCATGCTTTCTTTGAAGATGCTAATGTTGTTATAGCTTCATCATCAGTTACAGCTAGTGTTAAAAGTAGCCATAAAGATGCTGGGTCTCAATTTGCGACAGGATCTAAGAGCCCGTGCATGACTGATAAAATGTCTAGTCTGCAATATGAATCCAGGAGGTCCAAATTTTCCTTGGATACAAAAAAAGAGGTTAAGGGTACCGGTACAACATTAATCATTAACAGTCATGAGGCCTTCCAGGGAAAAGAGGCGTTGAGTGGTGCTCCTATTGATATAGTTTCCAAAAGGGATGAGTCTCAGGAGGGGCAAAAGACCAAGTCTGAATCTGTTCTGCCGAAGGTGGATGAGTATGGGAGATTGGTCAGAGAAGGTTCCACTGACAGTAACTCTGATGGTTCACGTTATAATAAGAGGCGTAAAAGAGGCAGAAGCAGAAGCCGCAGCCACAGTCGCAGCCGTATCAGGAGCCGCAGCCACAGCCGCAGCCGCAGCCGTATCCGGAGCCGGAGCCGCAGCCGCAGTTGTAGCCGGTCTCCTCTTGACAGCAGGAGGAGGAGGAGGAGTCCTCGGAGGAGAAGAGAGAAGCGAAACCGTTCTCCCAGTTGGTCTTCTAGGAATCATAGAAGCAGGAGCAGGTCTCCCACTTTTAGGCGTGCAGGTGATTTCAGAGATGAAAATAAGAGACAGGACAGGCGCCACATTCCAGAGTGCTTTGACTTCCTTAGAGGCAGATGCTTCCGTGGAGCATACTGTCGGTATATGCACCGTGCACATGACCAAAGTGATGGTTCATGGCGCCATAGGAGCAACCAAAAGCATCTAGAAGTTCAGCCTAGTGTGAAGAACTCTAGGATTAAGGAAGAGATTGAAGATAGCTCTGACATGAATCCGCATGGTGAAATCAAAGGTCAAGAGATGCAACAATTTCAAGATGTGGCCGCAAAAGATGGTCAGTTTATTGATCCTGATGAAAATGATTGTGAGAGCTCTAGAGTGACAGCTGCTACAATGCAACTGAAACAAAATTTTCAAGTAAAGTCTGAAGGAACCATCGGTCACAATCCTGAATCTCACCAGCCATCCCCTCAGATGTTCAGCTATGCTGATAATATGAAGTCGTGGGGTGATACTTCTCAGGCTATTGAACAATCTCGAAGCAATAATTCTGCAGGACAGCTTCAGAAGGCTTATTTTTCGTCTCAGCAGATGGAAGCCTCTCTCATATCTGATTCACCACCAGATCGAGCATCCAAGATTTCTCCAAATAAGGTTTCTAGTATTGAACATGCAACAGATGCACTCTTATCAACTCATTCACGTCCCACTGAATGTTCTAATACTCAACCACTTTCATCAGGACAGTTTTTATCACAGTATATGGCTCCTAAAGAGTCACCTCTTCCCAGTTTTTCTGCTGCAAATAGTCCATATCCATCACAGCTGCCTCCTCCTCCTCCTTCACTATCACAAGGTACCAGTGTTGCTCATGTGCCACAGGTGCATAGGGACTACAACCAGAGGCCACCCTATCCAGTTCAGTCCATTCCTACAGGAATGATTCATTCTTATCAAGGTCCCTTACCCAACCAACCTGCCCAATTCTCGGTGTCACAAGATTCACCTTGGACATCCTTGCCGCCGCCACCTCCACGACCACCGTATGATTCATCTTTAAATGCAGGAACTGCTGCACGAGGTGCTTCTTCACAATTTCAGCAGAATAACTTGGCTCCAAGGAGTGACTCCAGTTCTCAGAGTTCTATGAGGCCTTACGGCTCTTACCCAACTGAATCCCCTCATTCTAAGGGTGACTTTCTGCATCAGATGTACCCTACATTGTCAGACCTTCCTCATCCTCTACCAAACAGGGAAGATTTCGGATCAGGCAATCCATCAAATCAACCTTTTGGGGGCCCTGGTCATATGAGAGAAGATCGCTTTACACATGCTCCTGTGCAGGATGTAAATCCTTCACATTCTTTTGCTCAGGGACACCTACACCCTCAACCTGCACCTTCTTCACAGGAGTTAACAAGGATCAAAATGCAAAATTTCTCTGGTGACAATTTTCCATCTGGAGAACTTTTAAATTCATCATCACAAATTCATCCTCATTCACATAACCAACAGCCAAGCTATGGTGTGCAATACTCTGTTGGTGATAGTATTTTGGGTGTGCCTGGGAAGACTGGTGTACAACACCCTGTAGGTGGAAGCATTTTGGGTTTACCTGGGAAAGATGGCCCCATGTCCCGATACCCTCCAGATATGCTGGACAGGAGTCAGTTTTCTCAAGTTCCTGATTTTGGGGCATCTAGAATTCAAACACATCATAATCCTTACGCAGCTACTTTTGAGCAGCCTGTAAGCTCCAAATTCAGTTCTAACATTCTCATTCAAGAAAAGAATGCTCCCGGTGGTAAGATGTTTGATACACCGGTCCAAGTCCCAGTTGATGGGCAAGGTGTTGGCAGTGCTGGGTCAAGACAGACAACTTCCTCGCCGAGTTCTGCTAGAGCTGGTGGTCAGCTTTTGCCCAAGTCAGATTGTGAGCAGTATGATCCACTTTTTGACAGCATTGAGCCATCAGGAAATCCACTCAATAAACATGATCACAGCCAAAAGCATATACCCACCAGTGATTCAAATATGATGGTGAGGCTCAGTGGTTCTTGTGAGCCATTAGATGTAGAAGAGAACAACAAACATACAGAGGTTCGCCCTGTTGCTTCGGCTACATCTCTGGATAATGACGGCTATGGTGAGACAGCAGATGCAGAAGTGGGTGTTGTTGAGGATGAGAGTCTTAGTAATGATGATGGTGCAGCAAACATGGCTGTAGGAGAGATGGAGATTGATCAGGTGAAATCTGGAGGGAAGAGCAAGAAGAAAAAGGATTCCAGATCAACGAGACTTTTCAAGAGTGCTGTTGCAGATTTTGTAAAGGATCTTCTGAAGCCGTCATGGCGGCAGGGTAATATGAGCAAAGAAGCTTTCAAGACCATTGTCAAAAAGACTGTTGATAAGGTTTCTGGAGCCATGAAGAGCCACCAGATACCCAAGTCCGAAGCAAAGATAAATCACTACATTGACTCGTCTCAGCGGAAACTGACAAAGCTTGTGATGGGTTATGTTGATAAGTATGTCAAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

1469

Amino Acids

159.8

Weight (kDa)

7.52

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 1385 - 1453 3.8e-06 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1659
AarI CACCTGC 2 cut(s) 67, 1901
Acc36I ACCTGC 6 cut(s) 67, 575, 1878, 1901, 2854, 3271
Acc65I GGTACC 2 cut(s) 1451, 2726
AccB1I GGYRCC 6 cut(s) 115, 1027, 1451, 1947, 2049, 2726
AccB7I CCANNNNNTGG 3 cut(s) 530, 3392, 3710
AccI GTMKAC 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 1752
AclWI GGATC 7 cut(s) 1244, 1363, 2210, 3142, 3299, 3809, 4209
AcoI YGGCCR 3 cut(s) 7, 34, 2190
AcsI RAATTY 9 cut(s) 331, 1159, 1418, 2278, 3304, 3343, 3357, 3573, 3629
AcuI CTGAAG 7 cut(s) 77, 297, 762, 1077, 2316, 2417, 4229
AcyI GRCGYC 3 cut(s) 1028, 1948, 2050
AdeI CACNNNGTG 1 cut(s) 2951
AfaI GTAC 5 cut(s) 1453, 1459, 2728, 3083, 3450
AflIII ACRYGT 1 cut(s) 393
AgeI ACCGGT 2 cut(s) 1454, 3691
AjiI CACGTC 1 cut(s) 2573
AjnI CCWGG 7 cut(s) 36, 963, 1406, 1491, 3169, 3433, 3484
AjuI GAANNNNNNNTTGG 2 cut(s) 2509, 2541
Alw21I GWGCWC 4 cut(s) 937, 1519, 2026, 2243
Alw44I GTGCAC 1 cut(s) 2022
AlwI GGATC 7 cut(s) 1244, 1363, 2210, 3142, 3299, 3809, 4209
AlwNI CAGNNNCTG 2 cut(s) 1148, 2939
Aor13HI TCCGGA 1 cut(s) 1752
AoxI GGCC 8 cut(s) 7, 34, 1485, 2190, 2774, 3020, 3166, 3496
ApaI GGGCCC 1 cut(s) 3170
ApaLI GTGCAC 1 cut(s) 2022
ApoI RAATTY 9 cut(s) 331, 1159, 1418, 2278, 3304, 3343, 3357, 3573, 3629
AseI ATTAAT 1 cut(s) 1466
AsiGI ACCGGT 2 cut(s) 1454, 3691
Asp700I GAANNNNTTC 2 cut(s) 1581, 1846
Asp718I GGTACC 2 cut(s) 1451, 2726
AspLEI GCGC 4 cut(s) 28, 1030, 1950, 2052
AspS9I GGNCC 9 cut(s) 74, 179, 488, 1413, 2828, 3166, 3167, 3497, 3694
AsuC2I CCSGG 2 cut(s) 177, 3669
AvaII GGWCC 6 cut(s) 74, 179, 488, 1413, 2828, 3694
BaeGI GKGCMC 2 cut(s) 2026, 3170
BaeI ACNNNNGTAYC 6 cut(s) 2718, 2751, 3678, 3711, 4301, 4334
BalI TGGCCA 2 cut(s) 9, 36
BanI GGYRCC 6 cut(s) 115, 1027, 1451, 1947, 2049, 2726
BanII GRGCYC 4 cut(s) 551, 1367, 2243, 3170
BarI GAAGNNNNNNTAC 2 cut(s) 4188, 4220
BauI CACGAG 1 cut(s) 2946
BbsI GAAGAC 4 cut(s) 527, 723, 1854, 3446
Bbv12I GWGCWC 4 cut(s) 937, 1519, 2026, 2243
BbvCI CCTCAGC 1 cut(s) 1149
BceAI ACGGC 6 cut(s) 13, 1695, 1731, 3043, 4024, 4198
BciT130I CCWGG 7 cut(s) 38, 965, 1408, 1493, 3171, 3435, 3486
BciVI GTATCC 2 cut(s) 1423, 1760
BclI TGATCA 3 cut(s) 1117, 3865, 4111
BcnI CCSGG 2 cut(s) 177, 3669
BfmI CTRYAG 7 cut(s) 150, 957, 1140, 2421, 2802, 3459, 4092
BfoI RGCGCY 3 cut(s) 1031, 1951, 2053
BfuAI ACCTGC 6 cut(s) 67, 575, 1878, 1901, 2854, 3271
BfuI GTATCC 2 cut(s) 1423, 1760
BglI GCCNNNNNGGC 1 cut(s) 4219
Bme1390I CCNGG 9 cut(s) 38, 177, 965, 1408, 1493, 3171, 3435, 3486, 3669
Bme18I GGWCC 6 cut(s) 74, 179, 488, 1413, 2828, 3694
BmgBI CACGTC 1 cut(s) 2573
BmgT120I GGNCC 9 cut(s) 74, 179, 488, 1413, 2828, 3166, 3167, 3497, 3694
BmrFI CCNGG 9 cut(s) 38, 177, 965, 1408, 1493, 3171, 3435, 3486, 3669
BmrI ACTGGG 3 cut(s) 1848, 2652, 3698
BmuI ACTGGG 3 cut(s) 1848, 2652, 3698
BoxI GACNNNNGTC 2 cut(s) 3534, 4259
BpiI GAAGAC 4 cut(s) 527, 723, 1854, 3446
BplI GAGNNNNNCTC 6 cut(s) 1501, 1533, 1804, 1836, 1876, 1908
BpmI CTGGAG 6 cut(s) 498, 2983, 3351, 3501, 4146, 4308
Bpu10I CCTNAGC 3 cut(s) 654, 1149, 3240
BpuEI CTTGAG 1 cut(s) 3531
BpuMI CCSGG 2 cut(s) 177, 3669
BsaBI GATNNNNATC 1 cut(s) 3219
BsaHI GRCGYC 3 cut(s) 1028, 1948, 2050
BsaI GGTCTC 3 cut(s) 1344, 1791, 1896
BsaWI WCCGGW 3 cut(s) 1454, 1752, 3691
BsaXI ACNNNNNCTCC 4 cut(s) 1801, 1831, 3187, 3217
Bse118I RCCGGY 3 cut(s) 1454, 1782, 3691
Bse1I ACTGG 8 cut(s) 1854, 2658, 2730, 2786, 3000, 3448, 3704, 3891
Bse8I GATNNNNATC 1 cut(s) 3219
BseAI TCCGGA 1 cut(s) 1752
BseBI CCWGG 7 cut(s) 38, 965, 1408, 1493, 3171, 3435, 3486
BseJI GATNNNNATC 1 cut(s) 3219
BseNI ACTGG 8 cut(s) 1854, 2658, 2730, 2786, 3000, 3448, 3704, 3891
BseSI GKGCMC 2 cut(s) 2026, 3170
BseYI CCCAGC 2 cut(s) 1334, 3731
BsgI GTGCAG 6 cut(s) 465, 1929, 2928, 3230, 3249, 4098
BshFI GGCC 8 cut(s) 9, 36, 1487, 2192, 2776, 3022, 3168, 3498
BshNI GGYRCC 6 cut(s) 115, 1027, 1451, 1947, 2049, 2726
BshTI ACCGGT 2 cut(s) 1454, 3691
BsiHKAI GWGCWC 4 cut(s) 937, 1519, 2026, 2243
BsiSI CCGG 8 cut(s) 113, 176, 1455, 1753, 1759, 1783, 3669, 3692
BslFI GGGAC 8 cut(s) 140, 985, 2559, 2774, 2814, 3258, 3490, 3686
BsmBI CGTCTC 2 cut(s) 2457, 4356
BsmFI GGGAC 8 cut(s) 140, 985, 2559, 2774, 2814, 3258, 3490, 3686
BsmI GAATGC 1 cut(s) 3667
BsnI GGCC 8 cut(s) 9, 36, 1487, 2192, 2776, 3022, 3168, 3498
Bso31I GGTCTC 3 cut(s) 1344, 1791, 1896
Bsp120I GGGCCC 1 cut(s) 3166
Bsp1286I GDGCHC 7 cut(s) 551, 937, 1367, 1519, 2026, 2243, 3170
Bsp13I TCCGGA 1 cut(s) 1752
Bsp1407I TGTACA 1 cut(s) 3448
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 8 cut(s) 9, 36, 1487, 2192, 2776, 3022, 3168, 3498
BspEI TCCGGA 1 cut(s) 1752
BspHI TCATGA 2 cut(s) 856, 1480
BspMAI CTGCAG 4 cut(s) 154, 961, 1144, 2425
BspMI ACCTGC 6 cut(s) 67, 575, 1878, 1901, 2854, 3271
BspPI GGATC 7 cut(s) 1244, 1363, 2210, 3142, 3299, 3809, 4209
BspQI GCTCTTC 2 cut(s) 4127, 4292
BspT107I GGYRCC 6 cut(s) 115, 1027, 1451, 1947, 2049, 2726
BspTNI GGTCTC 3 cut(s) 1344, 1791, 1896
BsrFI RCCGGY 3 cut(s) 1454, 1782, 3691
BsrGI TGTACA 1 cut(s) 3448
BsrI ACTGG 8 cut(s) 1854, 2658, 2730, 2786, 3000, 3448, 3704, 3891
BssAI RCCGGY 3 cut(s) 1454, 1782, 3691
BssNI GRCGYC 3 cut(s) 1028, 1948, 2050
BssSI CACGAG 1 cut(s) 2946
BssT1I CCWWGG 4 cut(s) 280, 1425, 2876, 2987
Bst2BI CACGAG 1 cut(s) 2946
Bst2UI CCWGG 7 cut(s) 38, 965, 1408, 1493, 3171, 3435, 3486
Bst6I CTCTTC 8 cut(s) 751, 781, 1825, 2109, 2658, 3942, 4127, 4292
BstACI GRCGYC 3 cut(s) 1028, 1948, 2050
BstAPI GCANNNNNTGC 4 cut(s) 301, 2549, 2939, 2951
BstAUI TGTACA 1 cut(s) 3448
BstC8I GCNNGC 5 cut(s) 141, 686, 791, 795, 1908
BstDSI CCRYGG 2 cut(s) 280, 1993
BstENI CCTNNNNNAGG 1 cut(s) 165
BstH2I RGCGCY 3 cut(s) 1031, 1951, 2053
BstHHI GCGC 4 cut(s) 28, 1030, 1950, 2052
BstNI CCWGG 7 cut(s) 38, 965, 1408, 1493, 3171, 3435, 3486
BstNSI RCATGY 4 cut(s) 311, 397, 2543, 3203
BstPAI GACNNNNGTC 2 cut(s) 3534, 4259
BstSCI CCNGG 9 cut(s) 36, 175, 963, 1406, 1491, 3169, 3433, 3484, 3667
BstSFI CTRYAG 7 cut(s) 150, 957, 1140, 2421, 2802, 3459, 4092
BstSLI GKGCMC 2 cut(s) 2026, 3170
BstV2I GAAGAC 4 cut(s) 527, 723, 1854, 3446
BstX2I RGATCY 2 cut(s) 1355, 4201
BstXI CCANNNNNNTGG 1 cut(s) 2039
BstYI RGATCY 2 cut(s) 1355, 4201
BsuI GTATCC 2 cut(s) 1423, 1760
BsuRI GGCC 8 cut(s) 9, 36, 1487, 2192, 2776, 3022, 3168, 3498
BtgI CCRYGG 2 cut(s) 280, 1993
BtrI CACGTC 1 cut(s) 2573
BtsI GCAGTG 2 cut(s) 119, 3733
BtsIMutI CAGTG 8 cut(s) 119, 235, 1629, 2577, 2737, 3733, 3898, 3925
BveI ACCTGC 6 cut(s) 67, 575, 1878, 1901, 2854, 3271
Cac8I GCNNGC 5 cut(s) 141, 686, 791, 795, 1908
CaiI CAGNNNCTG 2 cut(s) 1148, 2939
CciI TCATGA 2 cut(s) 856, 1480
CfoI GCGC 4 cut(s) 28, 1030, 1950, 2052
Cfr10I RCCGGY 3 cut(s) 1454, 1782, 3691
Cfr13I GGNCC 9 cut(s) 74, 179, 488, 1413, 2828, 3166, 3167, 3497, 3694
Csp6I GTAC 5 cut(s) 1452, 1458, 2727, 3082, 3449
CspAI ACCGGT 2 cut(s) 1454, 3691
CviQI GTAC 5 cut(s) 1452, 1458, 2727, 3082, 3449
DinI GGCGCC 3 cut(s) 1029, 1949, 2051
DraI TTTAAA 2 cut(s) 2928, 3342
DraIII CACNNNGTG 1 cut(s) 2951
EaeI YGGCCR 3 cut(s) 7, 34, 2190
Eam1104I CTCTTC 8 cut(s) 751, 781, 1825, 2109, 2658, 3942, 4127, 4292
EarI CTCTTC 8 cut(s) 751, 781, 1825, 2109, 2658, 3942, 4127, 4292
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 2241
Eco130I CCWWGG 4 cut(s) 280, 1425, 2876, 2987
Eco147I AGGCCT 2 cut(s) 1487, 3022
Eco24I GRGCYC 4 cut(s) 551, 1367, 2243, 3170
Eco31I GGTCTC 3 cut(s) 1344, 1791, 1896
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 6 cut(s) 74, 179, 488, 1413, 2828, 3694
Eco53kI GAGCTC 1 cut(s) 2241
Eco57I CTGAAG 7 cut(s) 77, 297, 762, 1077, 2316, 2417, 4229
EcoICRI GAGCTC 1 cut(s) 2241
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 4 cut(s) 179, 2828, 3166, 3167
EcoRI GAATTC 1 cut(s) 3573
EcoRII CCWGG 7 cut(s) 36, 963, 1406, 1491, 3169, 3433, 3484
EcoRV GATATC 1 cut(s) 826
EcoT14I CCWWGG 4 cut(s) 280, 1425, 2876, 2987
EcoT38I GRGCYC 4 cut(s) 551, 1367, 2243, 3170
EgeI GGCGCC 3 cut(s) 1029, 1949, 2051
EheI GGCGCC 3 cut(s) 1029, 1949, 2051
ErhI CCWWGG 4 cut(s) 280, 1425, 2876, 2987
Esp3I CGTCTC 2 cut(s) 2457, 4356
FalI AAGNNNNNCTT 2 cut(s) 3050, 3082
FaqI GGGAC 8 cut(s) 140, 985, 2559, 2774, 2814, 3258, 3490, 3686
FauI CCCGC 1 cut(s) 223
FauNDI CATATG 1 cut(s) 3177
FbaI TGATCA 3 cut(s) 1117, 3865, 4111
FblI GTMKAC 1 cut(s) 455
FriOI GRGCYC 4 cut(s) 551, 1367, 2243, 3170
GlaI GCGC 4 cut(s) 27, 1029, 1949, 2051
GsaI CCCAGC 2 cut(s) 1338, 3735
GsuI CTGGAG 6 cut(s) 498, 2983, 3351, 3501, 4146, 4308
HaeII RGCGCY 3 cut(s) 1031, 1951, 2053
HaeIII GGCC 8 cut(s) 9, 36, 1487, 2192, 2776, 3022, 3168, 3498
HapII CCGG 8 cut(s) 113, 176, 1455, 1753, 1759, 1783, 3669, 3692
HhaI GCGC 4 cut(s) 28, 1030, 1950, 2052
Hin1I GRCGYC 3 cut(s) 1028, 1948, 2050
Hin6I GCGC 4 cut(s) 26, 1028, 1948, 2050
HinP1I GCGC 4 cut(s) 26, 1028, 1948, 2050
HincII GTYRAC 3 cut(s) 456, 1195, 3285
HindII GTYRAC 3 cut(s) 456, 1195, 3285
HindIII AAGCTT 4 cut(s) 504, 1059, 4245, 4370
HpaI GTTAAC 2 cut(s) 1195, 3285
HpaII CCGG 8 cut(s) 113, 176, 1455, 1753, 1759, 1783, 3669, 3692
Hpy166II GTNNAC 8 cut(s) 456, 944, 1195, 1652, 2024, 3285, 3449, 3482
Hpy8I GTNNAC 8 cut(s) 456, 944, 1195, 1652, 2024, 3285, 3449, 3482
Hpy99I CGWCG 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 300, 1654, 2572
HpySE526I ACGT 3 cut(s) 300, 1654, 2572
Hsp92I GRCGYC 3 cut(s) 1028, 1948, 2050
HspAI GCGC 4 cut(s) 26, 1028, 1948, 2050
KasI GGCGCC 3 cut(s) 1027, 1947, 2049
Kpn2I TCCGGA 1 cut(s) 1752
KpnI GGTACC 2 cut(s) 1455, 2730
Ksp22I TGATCA 3 cut(s) 1117, 3865, 4111
KspAI GTTAAC 2 cut(s) 1195, 3285
LguI GCTCTTC 2 cut(s) 4127, 4292
MaeII ACGT 3 cut(s) 300, 1654, 2572
MfeI CAATTG 1 cut(s) 1010
MflI RGATCY 2 cut(s) 1355, 4201
MhlI GDGCHC 7 cut(s) 551, 937, 1367, 1519, 2026, 2243, 3170
MlsI TGGCCA 2 cut(s) 9, 36
MluNI TGGCCA 2 cut(s) 9, 36
Mly113I GGCGCC 3 cut(s) 1028, 1948, 2050
MlyI GAGTC 9 cut(s) 358, 737, 1556, 1825, 2654, 2990, 3544, 4066, 4340
MmeI TCCRAC 3 cut(s) 124, 361, 612
Mox20I TGGCCA 2 cut(s) 9, 36
MroI TCCGGA 1 cut(s) 1752
MroXI GAANNNNTTC 2 cut(s) 1581, 1846
MscI TGGCCA 2 cut(s) 9, 36
MseI TTAA 9 cut(s) 1194, 1314, 1446, 1466, 1473, 2109, 2927, 3284, 3341
MslI CAYNNNNRTG 4 cut(s) 812, 927, 949, 1329
Msp20I TGGCCA 2 cut(s) 9, 36
MspA1I CMGCKG 5 cut(s) 218, 1148, 2255, 2695, 4357
MspI CCGG 8 cut(s) 113, 176, 1455, 1753, 1759, 1783, 3669, 3692
MspR9I CCNGG 9 cut(s) 38, 177, 965, 1408, 1493, 3171, 3435, 3486, 3669
MunI CAATTG 1 cut(s) 1010
Mva1269I GAATGC 1 cut(s) 3667
MvaI CCWGG 7 cut(s) 38, 965, 1408, 1493, 3171, 3435, 3486
NarI GGCGCC 3 cut(s) 1028, 1948, 2050
NciI CCSGG 2 cut(s) 177, 3669
NcoI CCATGG 1 cut(s) 280
NdeI CATATG 1 cut(s) 3177
NmeAIII GCCGAG 1 cut(s) 3783
NmuCI GTSAC 9 cut(s) 361, 396, 2248, 2309, 2646, 2862, 2993, 3062, 3314
NspI RCATGY 4 cut(s) 311, 397, 2543, 3203
PagI TCATGA 2 cut(s) 856, 1480
PaqCI CACCTGC 2 cut(s) 67, 1901
PasI CCCWGGG 1 cut(s) 964
PceI AGGCCT 2 cut(s) 1487, 3022
PciI ACATGT 1 cut(s) 393
PciSI GCTCTTC 2 cut(s) 4127, 4292
PctI GAATGC 1 cut(s) 3667
PdmI GAANNNNTTC 2 cut(s) 1581, 1846
PflFI GACNNNGTC 1 cut(s) 1570
PflMI CCANNNNNTGG 3 cut(s) 530, 3392, 3710
PfoI TCCNGGA 1 cut(s) 1406
PinAI ACCGGT 2 cut(s) 1454, 3691
PleI GAGTC 9 cut(s) 358, 737, 1555, 1824, 2653, 2990, 3543, 4065, 4340
PluTI GGCGCC 3 cut(s) 1031, 1951, 2053
PpsI GAGTC 9 cut(s) 358, 737, 1555, 1824, 2653, 2990, 3543, 4065, 4340
PpuMI RGGWCCY 2 cut(s) 179, 2828
PscI ACATGT 1 cut(s) 393
PshAI GACNNNNGTC 2 cut(s) 3534, 4259
PshBI ATTAAT 1 cut(s) 1466
PsiI TTATAA 1 cut(s) 1659
Psp124BI GAGCTC 1 cut(s) 2243
Psp5II RGGWCCY 2 cut(s) 179, 2828
Psp6I CCWGG 7 cut(s) 36, 963, 1406, 1491, 3169, 3433, 3484
PspFI CCCAGC 2 cut(s) 1334, 3731
PspGI CCWGG 7 cut(s) 36, 963, 1406, 1491, 3169, 3433, 3484
PspOMI GGGCCC 1 cut(s) 3166
PspPI GGNCC 9 cut(s) 74, 179, 488, 1413, 2828, 3166, 3167, 3497, 3694
PspPPI RGGWCCY 2 cut(s) 179, 2828
PstI CTGCAG 4 cut(s) 154, 961, 1144, 2425
PstNI CAGNNNCTG 2 cut(s) 1148, 2939
PsuI RGATCY 2 cut(s) 1355, 4201
PsyI GACNNNGTC 1 cut(s) 1570
PvuII CAGCTG 3 cut(s) 1148, 2255, 2695
RsaI GTAC 5 cut(s) 1453, 1459, 2728, 3083, 3450
RsaNI GTAC 5 cut(s) 1452, 1458, 2727, 3082, 3449
RseI CAYNNNNRTG 4 cut(s) 812, 927, 949, 1329
SacI GAGCTC 1 cut(s) 2243
SalI GTCGAC 1 cut(s) 454
SapI GCTCTTC 2 cut(s) 4127, 4292
SaqAI TTAA 9 cut(s) 1194, 1314, 1446, 1466, 1473, 2109, 2927, 3284, 3341
Sau96I GGNCC 9 cut(s) 74, 179, 488, 1413, 2828, 3166, 3167, 3497, 3694
SchI GAGTC 9 cut(s) 358, 737, 1556, 1825, 2654, 2990, 3544, 4066, 4340
ScrFI CCNGG 9 cut(s) 38, 177, 965, 1408, 1493, 3171, 3435, 3486, 3669
SduI GDGCHC 7 cut(s) 551, 937, 1367, 1519, 2026, 2243, 3170
SfcI CTRYAG 7 cut(s) 150, 957, 1140, 2421, 2802, 3459, 4092
SfoI GGCGCC 3 cut(s) 1029, 1949, 2051
SinI GGWCC 6 cut(s) 74, 179, 488, 1413, 2828, 3694
SmiMI CAYNNNNRTG 4 cut(s) 812, 927, 949, 1329
SmlI CTYRAG 1 cut(s) 3546
SmoI CTYRAG 1 cut(s) 3546
SseBI AGGCCT 2 cut(s) 1487, 3022
SspDI GGCGCC 3 cut(s) 1027, 1947, 2049
SstI GAGCTC 1 cut(s) 2243
StuI AGGCCT 2 cut(s) 1487, 3022
StyD4I CCNGG 9 cut(s) 36, 175, 963, 1406, 1491, 3169, 3433, 3484, 3667
StyI CCWWGG 4 cut(s) 280, 1425, 2876, 2987
TaiI ACGT 3 cut(s) 303, 1657, 2575
TaqI TCGA 3 cut(s) 455, 2407, 2497
TaqII GACCGA 1 cut(s) 2297
TatI WGTACW 1 cut(s) 3448
Tru1I TTAA 9 cut(s) 1194, 1314, 1446, 1466, 1473, 2109, 2927, 3284, 3341
Tru9I TTAA 9 cut(s) 1194, 1314, 1446, 1466, 1473, 2109, 2927, 3284, 3341
TscAI CASTG 8 cut(s) 126, 235, 1636, 2584, 2737, 3733, 3898, 3925
TseFI GTSAC 9 cut(s) 361, 396, 2248, 2309, 2646, 2862, 2993, 3062, 3314
Tsp45I GTSAC 9 cut(s) 361, 396, 2248, 2309, 2646, 2862, 2993, 3062, 3314
TspGWI ACGGA 4 cut(s) 213, 273, 855, 1982
TspRI CASTG 8 cut(s) 126, 235, 1636, 2584, 2737, 3733, 3898, 3925
Tth111I GACNNNGTC 1 cut(s) 1570
Van91I CCANNNNNTGG 3 cut(s) 530, 3392, 3710
VneI GTGCAC 1 cut(s) 2022
VpaK11BI GGWCC 6 cut(s) 74, 179, 488, 1413, 2828, 3694
VspI ATTAAT 1 cut(s) 1466
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 9 cut(s) 331, 1159, 1418, 2278, 3304, 3343, 3357, 3573, 3629
XbaI TCTAGA 4 cut(s) 1034, 2074, 2243, 3569
XceI RCATGY 4 cut(s) 311, 397, 2543, 3203
XcmI CCANNNNNNNNNTGG 3 cut(s) 17, 1331, 1423
XmiI GTMKAC 1 cut(s) 455
XmnI GAANNNNTTC 2 cut(s) 1581, 1846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.