Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Reverse (-)

9911873 .. 9914518

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGATCTTCTCTGCGTCTGCTTCTCTAACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACTCTCTGCAAGCCGTTGCTGTCTTCTTCTTCTACTAGACTCATTTCTTGTCACAGTCGTATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGATTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGGAGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTTGGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGGTGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGAGACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGGTGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGATGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCCTGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGCAGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGCAGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGTGAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

280

Amino Acids

30.47

Weight (kDa)

5.05

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	100 - 263	5.5e-26	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	180, 380, 509
AclWI	GGATC	5 cut(s)	200, 206, 219, 557, 569
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	3 cut(s)	471, 479, 777
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	412, 437, 707, 734
Alw26I	GTCTC	3 cut(s)	162, 168, 440
AlwI	GGATC	5 cut(s)	200, 206, 219, 557, 569
AlwNI	CAGNNNCTG	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	728
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	511
BamHI	GGATCC	1 cut(s)	211
BbsI	GAAGAC	4 cut(s)	47, 102, 741, 765
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	497, 811
BceAI	ACGGC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	162, 168, 440
BfaI	CTAG	3 cut(s)	123, 725, 841
BfuI	GTATCC	1 cut(s)	703
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	381, 464
BlsI	GCNGC	2 cut(s)	382, 465
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	4 cut(s)	47, 102, 741, 765
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	3 cut(s)	60, 387, 541
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	43, 193
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	564
BseGI	GGATG	1 cut(s)	601
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	3 cut(s)	321, 618, 627
BseNI	ACTGG	2 cut(s)	43, 193
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	3 cut(s)	162, 168, 440
BsmBI	CGTCTC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
BspACI	CCGC	3 cut(s)	180, 380, 509
BspCNI	CTCAG	3 cut(s)	322, 619, 626
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	5 cut(s)	200, 206, 219, 557, 569
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	43, 193
BssMI	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
Bst4CI	ACNGT	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	4 cut(s)	330, 539, 613, 627
BstF5I	GGATG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	7 cut(s)	9, 175, 195, 214, 372, 552, 564
BstMAI	GTCTC	3 cut(s)	162, 168, 440
BstMBI	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	4 cut(s)	47, 102, 741, 765
BstX2I	RGATCY	3 cut(s)	6, 211, 549
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	3 cut(s)	6, 211, 549
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	703
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	202, 582
Cac8I	GCNNGC	1 cut(s)	98
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	6
DdeI	CTNAG	4 cut(s)	330, 539, 613, 627
DpnI	GATC	7 cut(s)	8, 174, 194, 213, 371, 551, 563
DpnII	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
EciI	GGCGGA	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	3 cut(s)	471, 479, 777
EcoRV	GATATC	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	162
FaiI	YATR	7 cut(s)	149, 242, 248, 275, 476, 557, 559
FauNDI	CATATG	1 cut(s)	557
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	381, 464
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	381, 464
FspBI	CTAG	3 cut(s)	123, 725, 841
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	381, 464
GsuI	CTGGAG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	4 cut(s)	320, 405, 517, 825
HinfI	GANTC	6 cut(s)	42, 126, 206, 440, 602, 775
Hpy166II	GTNNAC	1 cut(s)	798
Hpy188I	TCNGA	5 cut(s)	211, 445, 616, 757, 780
Hpy188III	TCNNGA	4 cut(s)	437, 575, 666, 831
Hpy8I	GTNNAC	1 cut(s)	798
HpyAV	CCTTC	3 cut(s)	406, 421, 630
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	96, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	4 cut(s)	330, 539, 613, 627
HspAI	GCGC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
LmnI	GCTCC	2 cut(s)	157, 266
LpnPI	CCDG	8 cut(s)	24, 174, 266, 267, 369, 483, 560, 639
Lsp1109I	GCAGC	1 cut(s)	475
MaeI	CTAG	3 cut(s)	123, 725, 841
MaeIII	GTNAC	4 cut(s)	137, 653, 674, 748
MalI	GATC	7 cut(s)	8, 174, 194, 213, 371, 551, 563
MboI	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
MboII	GAAGA	9 cut(s)	47, 50, 102, 105, 108, 746, 770, 820, 833
MflI	RGATCY	3 cut(s)	6, 211, 549
MluCI	AATT	3 cut(s)	288, 364, 728
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	60, 84, 193, 225, 325, 370, 582
MseI	TTAA	3 cut(s)	35, 291, 303
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeI	CATATG	1 cut(s)	557
NdeII	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	137
PfeI	GAWTC	5 cut(s)	42, 206, 440, 602, 775
PkrI	GCNGC	2 cut(s)	382, 465
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	6, 211, 549
SaqAI	TTAA	3 cut(s)	35, 291, 303
SatI	GCNGC	2 cut(s)	381, 464
Sau3AI	GATC	7 cut(s)	6, 172, 192, 211, 369, 549, 561
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	3 cut(s)	75, 402, 520
SmoI	CTYRAG	3 cut(s)	75, 402, 520
Sse9I	AATT	3 cut(s)	288, 364, 728
SsiI	CCGC	3 cut(s)	180, 380, 509
SspMI	CTAG	3 cut(s)	123, 725, 841
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	82, 564, 832
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	288, 364, 728
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	5 cut(s)	42, 206, 440, 602, 775
Tru1I	TTAA	3 cut(s)	35, 291, 303
Tru9I	TTAA	3 cut(s)	35, 291, 303
TscAI	CASTG	2 cut(s)	202, 589
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	202, 589
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	728
XspI	CTAG	3 cut(s)	123, 725, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.