Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Reverse (-)

323733 .. 325359

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00460.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGATAACAAGGAGCTTCCTCCTCCATTCTTCTTGCTCCAAGCTCTCATTCCGCACTCCCTTACGCCACTCTCGAGTTGTGGCTTCCAGTTTCTCAATTCCGATTACCTCTCGCACCCACATCCGAAAACCTCTCGCCGCTTCATGCTCCGCCTTCGACGGCGGCGATTCCAGCTCAGCAGCCAAGGTTTCTGTAGCTGACCTCTCTTCTGCAGTAAAGAACAAGGCAATGGATATAACCCCTGAGCTGAAAGGAACTTCCATATTTCTTGTGGGCATGAAGAGCTCCATGAAAACCAGTTTGGGGAAGCTCCTAGCCAATGTGTTGCAATATTATTACTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCAGGAGGTGAATCTGCTGCCAAATTGCTTACGGTGGCTGACACAAATGGTTTTCGGGAATCCGAGACTGAAGTATTGAAGCAACTGTCATCCATGGATCGATTGGTGGTTTGTGCCGGAGATGGTGCAGTTCAAAGTTCAACTAATCTGGCTCTTCTGAGGTATGGAATCTCTATATGGATTGATGTACCTGTAGACTTGGTGGCCAGGGGCATGATCGAAGATCAAAGTCAGCTTCCTGCACTCAACTTATCTGCTTCAGCATCTTATCAAGAGGTTTTGACTCACCTAAGTACTTCGTACGAAGAAGTGAGAGGTGGATACGAAACAGCTGATGCAACCGTTTCCGTTGAAAAACTAGCTTATAAATTAGGTTATGATGACCTTGGTGATGTAACGACAGAAAACATGGATTTGGAGGTAACGAGTGTAGTTTTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

272

Amino Acids

29.06

Weight (kDa)

4.99

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	4 cut(s)	55, 141, 153, 165
AclWI	GGATC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	462, 615
AfaI	GTAC	3 cut(s)	561, 667, 674
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	4 cut(s)	451, 506, 513, 725
AjnI	CCWGG	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	4 cut(s)	35, 67, 287, 319
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	182, 371, 389
AsuHPI	GGTGA	3 cut(s)	392, 650, 773
AvaI	CYCGRG	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	194, 358, 376
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	317, 731
BfmI	CTRYAG	4 cut(s)	195, 213, 372, 564
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	5 cut(s)	141, 166, 183, 372, 390
BlpI	GCTNAGC	1 cut(s)	178
BlsI	GCNGC	5 cut(s)	142, 167, 184, 373, 391
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	2 cut(s)	644, 697
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	472
BsaJI	CCNNGG	4 cut(s)	186, 465, 579, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	90, 300
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	472
BseDI	CCNNGG	4 cut(s)	186, 465, 579, 757
BseGI	GGATG	2 cut(s)	123, 461
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	192, 237, 521
BseNI	ACTGG	2 cut(s)	90, 300
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	194, 358, 376
BsgI	GTGCAG	2 cut(s)	519, 597
BshFI	GGCC	1 cut(s)	578
BshVI	ATCGAT	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	489
BsiWI	CGTACG	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	469, 588, 595
Bsp1720I	GCTNAGC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	4 cut(s)	55, 141, 153, 165
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	3 cut(s)	191, 238, 522
BspDI	ATCGAT	1 cut(s)	472
BspMAI	CTGCAG	2 cut(s)	217, 376
BspPI	GGATC	1 cut(s)	477
BspQI	GCTCTTC	2 cut(s)	278, 531
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	90, 300
BssECI	CCNNGG	4 cut(s)	186, 465, 579, 757
BssMI	GATC	3 cut(s)	469, 588, 595
BssT1I	CCWWGG	3 cut(s)	186, 465, 757
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	4 cut(s)	350, 406, 459, 715
Bst6I	CTCTTC	3 cut(s)	214, 278, 531
BstDEI	CTNAG	4 cut(s)	178, 246, 530, 662
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	123, 461
BstKTI	GATC	3 cut(s)	472, 591, 598
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	469, 588, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 285
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	4 cut(s)	195, 213, 372, 564
BstV1I	GCAGC	3 cut(s)	194, 358, 376
Bsu15I	ATCGAT	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	578
BsuTUI	ATCGAT	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	123, 461
BtsIMutI	CAGTG	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	472
Csp6I	GTAC	3 cut(s)	560, 666, 673
CviAII	CATG	6 cut(s)	147, 280, 292, 466, 586, 781
CviQI	GTAC	3 cut(s)	560, 666, 673
DdeI	CTNAG	4 cut(s)	178, 246, 530, 662
DpnI	GATC	3 cut(s)	471, 590, 597
DpnII	GATC	3 cut(s)	469, 588, 595
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	3 cut(s)	214, 278, 531
EarI	CTCTTC	3 cut(s)	214, 278, 531
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	3 cut(s)	186, 465, 757
Eco24I	GRGCYC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	462, 615
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	3 cut(s)	186, 465, 757
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	3 cut(s)	186, 465, 757
FaeI	CATG	6 cut(s)	150, 283, 295, 469, 589, 784
FatI	CATG	6 cut(s)	146, 279, 291, 465, 585, 780
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	141, 166, 183, 372, 390
FokI	GGATG	2 cut(s)	110, 448
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	5 cut(s)	141, 166, 183, 372, 390
FspBI	CTAG	2 cut(s)	317, 731
GluI	GCNGC	5 cut(s)	141, 166, 183, 372, 390
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	6 cut(s)	150, 283, 295, 469, 589, 784
HinfI	GANTC	5 cut(s)	170, 383, 431, 540, 655
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	3 cut(s)	392, 650, 773
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	4 cut(s)	105, 128, 436, 531
Hpy188III	TCNNGA	3 cut(s)	75, 428, 644
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	4 cut(s)	350, 406, 459, 715
HpyCH4V	TGCA	6 cut(s)	215, 331, 374, 500, 614, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 285
HpyF3I	CTNAG	4 cut(s)	178, 246, 530, 662
Hsp92II	CATG	6 cut(s)	150, 283, 295, 469, 589, 784
Kzo9I	GATC	3 cut(s)	469, 588, 595
LguI	GCTCTTC	2 cut(s)	278, 531
LmnI	GCTCC	5 cut(s)	15, 44, 155, 293, 318
Lsp1109I	GCAGC	3 cut(s)	194, 358, 376
LweI	GCATC	2 cut(s)	644, 697
MaeI	CTAG	2 cut(s)	317, 731
MaeIII	GTNAC	2 cut(s)	766, 793
MalI	GATC	3 cut(s)	471, 590, 597
MboI	GATC	3 cut(s)	469, 588, 595
MboII	GAAGA	6 cut(s)	24, 201, 295, 518, 605, 689
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	3 cut(s)	99, 395, 740
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	649
Mox20I	TGGCCA	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	2 cut(s)	174, 285
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	469, 588, 595
NlaIII	CATG	6 cut(s)	150, 283, 295, 469, 589, 784
PaeR7I	CTCGAG	1 cut(s)	75
PciSI	GCTCTTC	2 cut(s)	278, 531
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 165
PfeI	GAWTC	4 cut(s)	170, 383, 431, 540
Pfl23II	CGTACG	1 cut(s)	672
PkrI	GCNGC	5 cut(s)	142, 167, 184, 373, 391
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspLI	CGTACG	1 cut(s)	672
PstI	CTGCAG	2 cut(s)	217, 376
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	3 cut(s)	561, 667, 674
RsaNI	GTAC	3 cut(s)	560, 666, 673
SacI	GAGCTC	1 cut(s)	290
SapI	GCTCTTC	2 cut(s)	278, 531
SatI	GCNGC	5 cut(s)	141, 166, 183, 372, 390
Sau3AI	GATC	3 cut(s)	469, 588, 595
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	2 cut(s)	644, 697
SfcI	CTRYAG	4 cut(s)	195, 213, 372, 564
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	99, 395, 740
SsiI	CCGC	4 cut(s)	55, 141, 153, 165
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	2 cut(s)	317, 731
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	578
StyI	CCWWGG	3 cut(s)	186, 465, 757
TaaI	ACNGT	4 cut(s)	350, 406, 459, 715
TaqI	TCGA	4 cut(s)	76, 159, 472, 591
TasI	AATT	3 cut(s)	99, 395, 740
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	2 cut(s)	143, 168
TfiI	GAWTC	4 cut(s)	170, 383, 431, 540
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	3 cut(s)	182, 371, 389
TspDTI	ATGAA	3 cut(s)	135, 296, 308
TspGWI	ACGGA	1 cut(s)	709
TspRI	CASTG	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 472
XhoI	CTCGAG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	2 cut(s)	317, 731
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.