Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8135912.1

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 497

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8135912.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atggatgtatcaccagaactcaaaggaactaccatattccttgtgggcatgaagagctccataaagaccagtttggggaaattcctcgccaacttgttacgatactattactttgacagtgatagtttggttgaggaagctgctggcactcaatctgccaccaaatctttaagggagactgacaagagtggtttccaggagtccgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

69

Amino Acids

7.62

Weight (kDa)

5.02

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	57, 140
AluI	AGCT	2 cut(s)	57, 140
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	3
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	2 cut(s)	57, 140
CviKI_1	RGCY	2 cut(s)	57, 140
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	35, 50, 62
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	4 cut(s)	27, 82, 129, 182
Lsp1109I	GCAGC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	2 cut(s)	95, 127
MseI	TTAA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	2 cut(s)	59, 142
SgeI	CNNG	8 cut(s)	26, 53, 61, 81, 98, 106, 156, 196
Sse9I	AATT	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	119
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.