Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Reverse (-)

71388079 .. 71391210

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0591800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTGGCGGACAAGGCGAAGAAGGCCAAGCTCGCCGAGAGAGCTCCGGAGGAGAACGCCGAAGCCGATCACATTGACGGCGACCTCGTGCTTTCCATCGAGAAATTGCAGGAGGCTCAAGACGACCTCGAGAAGGTTAATGAAGAAGCCAGTGACAAGGTGTTGGAAGTTGAGCAGAAGTATAATGTGATACGCAGACCGGTCTATTTGAAACGGAATGAAATAATAAAAACCATTCCTGACTTCTGGCTAACTGCTTTCCTTAGCCATCCTGCACTAAGCGATCTATTGAGTGAGGAAGACCAGAAGATCTTCAAATATTTAAGTTCTCTTGATGTGGAGGACTTCAAAGATGTTAAGTCAGGTTATGCTATCAGATTTAACTTTAACGAGAATCCTTATTTTGAAGATACAAAGCTGACTAAAACCTTCACATTCTTTGATGATGGGACAACTAAAATTGCTGGCACCACCATCAAGTGGAAGGAGGGCATGGGTACAGCAAATGGAGCCAATCACGGGAAAAAGGGAAACAAACGACCACCTGCTGAGGAGAGCTTCTTCAGTTGGTTTAGTGAGACTGAGCAGAAAGATATAGCTGAGTTTCAGGATGAGGTGGCAGAGATAATTAAGGAGGATTTATGGCCCAATCCTCTAAAGTACTTCAACAATGAGGCAGATGAAGAGGACTCTGAAGGTGATGAAGAGGAGAATGGTGATGATGATGACAATAATGGAGAAGAAGATACTGAGGGAGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

254

Amino Acids

29.03

Weight (kDa)

4.34

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	77 - 224	1.6e-26	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	547, 714
AfaI	GTAC	2 cut(s)	499, 662
AfiI	CCNNNNNNNGG	3 cut(s)	133, 480, 519
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	211, 316, 349, 407, 667
AluBI	AGCT	6 cut(s)	31, 44, 418, 558, 599, 762
AluI	AGCT	6 cut(s)	31, 44, 418, 558, 599, 762
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	24, 644
AsiGI	ACCGGT	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	710, 728
AvaI	CYCGRG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	46
BbvCI	CCTCAGC	1 cut(s)	549
BccI	CCATC	4 cut(s)	104, 276, 440, 482
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	469, 511
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	2 cut(s)	263, 549
BpuEI	CTTGAG	1 cut(s)	102
BsaWI	WCCGGW	2 cut(s)	46, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 480, 519
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	2 cut(s)	268, 616
BseLI	CCNNNNNNNGG	3 cut(s)	133, 480, 519
BseMII	CTCAG	4 cut(s)	540, 573, 591, 741
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	3 cut(s)	65, 566, 722
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	26, 646
BshNI	GGYRCC	1 cut(s)	467
BshTI	ACCGGT	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	47, 200
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	133, 480, 519
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	26, 646
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	67, 283, 309
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	26, 646
BspCNI	CTCAG	4 cut(s)	541, 574, 592, 742
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	469, 511
BspMI	ACCTGC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	199
BssMI	GATC	3 cut(s)	67, 283, 309
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst6I	CTCTTC	2 cut(s)	678, 699
BstC8I	GCNNGC	2 cut(s)	33, 466
BstDEI	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	268, 616
BstKTI	GATC	3 cut(s)	70, 286, 312
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	3 cut(s)	67, 283, 309
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 41, 509
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	26, 646
BtsCI	GGATG	2 cut(s)	268, 616
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	33, 466
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	498, 661
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	2 cut(s)	498, 661
DdeI	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
DpnI	GATC	3 cut(s)	69, 285, 311
DpnII	GATC	3 cut(s)	67, 283, 309
Eam1104I	CTCTTC	2 cut(s)	678, 699
EarI	CTCTTC	2 cut(s)	678, 699
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	547, 714
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	496
FaiI	YATR	5 cut(s)	183, 369, 494, 596, 643
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	1 cut(s)	492
FokI	GGATG	2 cut(s)	255, 623
FriOI	GRGCYC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	26, 646
HapII	CCGG	2 cut(s)	47, 200
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	2 cut(s)	394, 689
HpaII	CCGG	2 cut(s)	47, 200
HphI	GGTGA	2 cut(s)	710, 728
Hpy188I	TCNGA	2 cut(s)	377, 694
Hpy188III	TCNNGA	7 cut(s)	47, 100, 119, 130, 239, 332, 608
HpyAV	CCTTC	5 cut(s)	16, 127, 439, 478, 689
HpyCH4V	TGCA	2 cut(s)	109, 275
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 41, 509
HpyF3I	CTNAG	6 cut(s)	263, 278, 549, 582, 600, 750
Hsp92II	CATG	1 cut(s)	496
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	67, 283, 309
LmnI	GCTCC	2 cut(s)	49, 509
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	3 cut(s)	69, 285, 311
MboI	GATC	3 cut(s)	67, 283, 309
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	3 cut(s)	104, 459, 627
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
MspI	CCGG	2 cut(s)	47, 200
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 41, 509
NdeII	GATC	3 cut(s)	67, 283, 309
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	2 cut(s)	469, 511
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 84
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	480
PinAI	ACCGGT	1 cut(s)	199
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	469, 511
PspPI	GGNCC	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	499, 662
RsaNI	GTAC	2 cut(s)	498, 661
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
Sau3AI	GATC	3 cut(s)	67, 283, 309
Sau96I	GGNCC	1 cut(s)	645
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	117, 128
SmoI	CTYRAG	2 cut(s)	117, 128
Sse9I	AATT	3 cut(s)	104, 459, 627
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	46
TaqI	TCGA	2 cut(s)	99, 129
TasI	AATT	3 cut(s)	104, 459, 627
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
Tru9I	TTAA	6 cut(s)	138, 323, 357, 381, 387, 630
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	156, 234, 696, 717
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.