Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Forward (+)

26989688 .. 26992108

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGATAACAAGGACCCTCCTCCATTCCTCTTGCTCTAAGCTCCCATTCCAAAATCCCTTCCTCCACTTTCAATCTCAAGTGGTGGCTTCGAGTTTCTCAAGCCGACGTGAGATAACAAAGACCTCCTCAATTCCCATTATATCTCGCACCCACTTCCGAAAACCCGTCGCAGCGTCATGCTCTGCCTCCGATGGCAGCAATTCCAGTTCAGCAACCAAGGTTTCTGTAGCTGACCCCTCTGTTGCATTGAAGAAGAAGGCAATGGATATATCCCCCGAACTCAAAGGAACTTCCATATTTCTTGTGGGCATGAAGAGCTCCATAAAAACTAGTTTGGGGAAACTCCTAGCCAATGTGTTACGGTATTATTACTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCTGGCGGTGAATCTGCTGCCAAATCTCTAAGGGAGACTGATAAGAATGGTTTTCATGAGTCTGAGACTGAAGTATTGAAGCAATTATCATCCATGGGTCGATTGGTGGTTTGTGCTGGAGATGGTGCGGTTCAGAGTTCAGCTAATCTGGCTCTTCTGAGATATGGGATCTCCATATGGATTGATATACCTGTAGACTTGGTTGCGAGGGGGGTGATCGAAGATCAAAGTCAGCTTCCTGCGTTCAACCTATCTGCTTCAGCATCTTATCCAGAGGTTTTGACTCACCTAAGTACTTCAAATGAAGAAGTCAGAGGTGGATATGAAACAGCTGATGCAACGATTTCCGTTGAAAAACTAGCGTGTAAATTAAGTTATGATGACTTCGGTGATGTAACCACTGAAGACATGGCTTTGGAGGTTCTCAAGGAGATAGAAAAATTGACTAGAGTAAAGAAGATGATGGAAGCAGCAGCAAGACCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

298

Amino Acids

32.15

Weight (kDa)

6.02

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	2 cut(s)	411, 533
AclWI	GGATC	1 cut(s)	581
AcuI	CTGAAG	3 cut(s)	495, 648, 828
AfaI	GTAC	1 cut(s)	700
AgsI	TTSAA	6 cut(s)	74, 253, 484, 652, 705, 758
AhlI	ACTAGT	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	110
AluBI	AGCT	7 cut(s)	43, 233, 321, 404, 548, 640, 737
AluI	AGCT	7 cut(s)	43, 233, 321, 404, 548, 640, 737
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	2 cut(s)	434, 464
AlwI	GGATC	1 cut(s)	581
ApeKI	GCWGC	6 cut(s)	173, 198, 404, 422, 875, 878
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	4 cut(s)	425, 631, 683, 806
AvaII	GGWCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	6 cut(s)	185, 210, 391, 409, 887, 890
BccI	CCATC	3 cut(s)	188, 521, 862
BcoDI	GTCTC	2 cut(s)	434, 464
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	4 cut(s)	333, 350, 764, 852
BfmI	CTRYAG	2 cut(s)	228, 597
BisI	GCNGC	6 cut(s)	174, 199, 405, 423, 876, 879
BlsI	GCNGC	6 cut(s)	175, 200, 406, 424, 877, 880
BmcAI	AGTACT	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	2 cut(s)	677, 730
BpiI	GAAGAC	1 cut(s)	816
BpmI	CTGGAG	1 cut(s)	543
BpuEI	CTTGAG	3 cut(s)	63, 85, 815
BsaJI	CCNNGG	2 cut(s)	219, 498
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	219, 498
BseGI	GGATG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	459, 554
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	11, 118
BseXI	GCAGC	6 cut(s)	185, 210, 391, 409, 887, 890
BsiHKAI	GWGCWC	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	434, 464
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	573, 621, 628
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	2 cut(s)	411, 533
BspCNI	CTCAG	2 cut(s)	460, 555
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	581
BspQI	GCTCTTC	2 cut(s)	311, 564
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	219, 498
BssMI	GATC	3 cut(s)	573, 621, 628
BssT1I	CCWWGG	2 cut(s)	219, 498
Bst4CI	ACNGT	2 cut(s)	366, 383
Bst6I	CTCTTC	2 cut(s)	311, 564
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	39, 434, 468, 563, 695
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	3 cut(s)	576, 624, 631
BstMAI	GTCTC	2 cut(s)	434, 464
BstMBI	GATC	3 cut(s)	573, 621, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 554
BstSFI	CTRYAG	2 cut(s)	228, 597
BstV1I	GCAGC	6 cut(s)	185, 210, 391, 409, 887, 890
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	388, 804
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	5 cut(s)	180, 313, 461, 499, 814
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	5 cut(s)	39, 434, 468, 563, 695
DpnI	GATC	3 cut(s)	575, 623, 630
DpnII	GATC	3 cut(s)	573, 621, 628
Eam1104I	CTCTTC	2 cut(s)	311, 564
EarI	CTCTTC	2 cut(s)	311, 564
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	219, 498
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	3 cut(s)	495, 648, 828
EcoICRI	GAGCTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	219, 498
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	219, 498
FaeI	CATG	5 cut(s)	183, 316, 464, 502, 817
FatI	CATG	5 cut(s)	179, 312, 460, 498, 813
FauNDI	CATATG	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	6 cut(s)	174, 199, 405, 423, 876, 879
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	6 cut(s)	174, 199, 405, 423, 876, 879
FspBI	CTAG	4 cut(s)	333, 350, 764, 852
GluI	GCNGC	6 cut(s)	174, 199, 405, 423, 876, 879
GsuI	CTGGAG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	183, 316, 464, 502, 817
HinfI	GANTC	3 cut(s)	416, 464, 688
HphI	GGTGA	4 cut(s)	425, 631, 683, 806
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	6 cut(s)	161, 193, 469, 540, 564, 719
Hpy188III	TCNNGA	2 cut(s)	461, 677
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	2 cut(s)	111, 173
HpyAV	CCTTC	2 cut(s)	70, 253
HpyCH4III	ACNGT	2 cut(s)	366, 383
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	248, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 554
HpyF3I	CTNAG	5 cut(s)	39, 434, 468, 563, 695
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	5 cut(s)	183, 316, 464, 502, 817
Kzo9I	GATC	3 cut(s)	573, 621, 628
LguI	GCTCTTC	2 cut(s)	311, 564
LmnI	GCTCC	2 cut(s)	48, 326
LpnPI	CCDG	7 cut(s)	220, 393, 507, 539, 609, 657, 690
Lsp1109I	GCAGC	6 cut(s)	185, 210, 391, 409, 887, 890
LweI	GCATC	2 cut(s)	677, 730
MaeI	CTAG	4 cut(s)	333, 350, 764, 852
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	360, 799
MalI	GATC	3 cut(s)	575, 623, 630
MboI	GATC	3 cut(s)	573, 621, 628
MboII	GAAGA	8 cut(s)	265, 268, 328, 551, 638, 722, 821, 874
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	5 cut(s)	132, 202, 488, 773, 845
MlyI	GAGTC	2 cut(s)	473, 682
MseI	TTAA	2 cut(s)	776, 892
MspA1I	CMGCKG	1 cut(s)	737
MwoI	GCNNNNNNNGC	2 cut(s)	318, 554
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	3 cut(s)	573, 621, 628
NlaIII	CATG	5 cut(s)	183, 316, 464, 502, 817
NlaIV	GGNNCC	1 cut(s)	17
PagI	TCATGA	1 cut(s)	460
PciSI	GCTCTTC	2 cut(s)	311, 564
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	6 cut(s)	175, 200, 406, 424, 877, 880
PleI	GAGTC	2 cut(s)	472, 682
PpsI	GAGTC	2 cut(s)	472, 682
PpuMI	RGGWCCY	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	15
PspPPI	RGGWCCY	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	323
SapI	GCTCTTC	2 cut(s)	311, 564
SaqAI	TTAA	2 cut(s)	776, 892
SatI	GCNGC	6 cut(s)	174, 199, 405, 423, 876, 879
Sau3AI	GATC	3 cut(s)	573, 621, 628
Sau96I	GGNCC	1 cut(s)	15
ScaI	AGTACT	1 cut(s)	700
SchI	GAGTC	2 cut(s)	473, 682
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	677, 730
SfcI	CTRYAG	2 cut(s)	228, 597
SinI	GGWCC	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	78, 100, 830
SmoI	CTYRAG	3 cut(s)	78, 100, 830
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	5 cut(s)	132, 202, 488, 773, 845
SsiI	CCGC	2 cut(s)	411, 533
SspMI	CTAG	4 cut(s)	333, 350, 764, 852
SstI	GAGCTC	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	219, 498
TaaI	ACNGT	2 cut(s)	366, 383
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	92, 505, 624
TasI	AATT	5 cut(s)	132, 202, 488, 773, 845
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	776, 892
Tru9I	TTAA	2 cut(s)	776, 892
TscAI	CASTG	2 cut(s)	388, 811
TseI	GCWGC	6 cut(s)	173, 198, 404, 422, 875, 878
TspDTI	ATGAA	4 cut(s)	329, 449, 723, 744
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	2 cut(s)	388, 811
VpaK11BI	GGWCC	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	3 cut(s)	304, 505, 811
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	4 cut(s)	333, 350, 764, 852
ZrmI	AGTACT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.