Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013212

Physical Location & Seq

Genomic Coordinates Reverse (-)

625644 .. 628068

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1010100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGATAACAAGGAGCTTCCTCCTCCATTCTTCTTGCTCCGAGCTCCCACTCCGCACTCCCTTCCGCCACTCTCAAGTTGCGGCTTCCAGTTTCTCAATTCCGATTACCTCTCGCACCCACATCCGAAAACCTCTCGCCACTTCATGCTCCGCCTCCGACGGCGGCGATTCCAGCTCAGCAGCCAAGGTTTCTGTAGCTGACCTCTCTTCTGCAGTAAAGAACAAGGCAATGGATATAACCCCTGAGCTGAAGGGAACTTCCATATTTCTTGTGGGCATGAAGAGCTCCATGAAAACCAGTTTGGGGAAGCTCCTAGCCAATGCGTTGCGATATTATTACTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCTGGAGGTGAATCTGCTGCCAAATCGCTTAGGGTGGCTGACATAAATGGTTTTCGGGAATCCGAGCAACTGTCATCCATGGGTCGATTGGTGGTTTGTGCCGGAGATGGTGCGGTTCAGAGTTCAACTAATCTGGCTCTTCTGAGGTATGGAATCTCTGTATGGATTGATGTACCTGTAGACTTGGTGGCCAGTGGCATGGTCGAAGATCAAAGTCAGCTTCCTGCACTCAACCTATCTGCTTCAGCATCTTATCAAGAGGTTTTGACTCACCTAAGTACTTCGTATGAAGAAGCGAGAGGTGGATACGAAACAGCTGATGCAACCGTTTCCGTTGAAGAACTAGCTTATCAATTAGGTTATGATGACCTTGGTGATGTAACGACAGAAAACATGGCTTTGGAGGTTCTCAAGGAGATAGAGAAACTGACCAGAGTAAAGAAGATGATGGAAGCGGCCGCGAGACCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

282

Amino Acids

30.1

Weight (kDa)

5.05

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	98 - 224	2.8e-17	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26900 AT3G26900 AT3G26900
fragaria_vesca	FvH4_6g54030 FvH4_6g54030
malus_domestica	MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica	Prupe.3G310900_v2.0.a1
pyrus_communis	pycom17g00460
rosa_chinensis	RchiOBHm_Chr2g0176211
rosa_laevigata	RLG00000022390
rosa_multiflora	Rmu_co8135912.1_g000001
rosa_rugosa	Rorug02G0591800
rosa_samantha	Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana	Rw2G054990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	1 cut(s)	833
AciI	CCGC	8 cut(s)	55, 67, 83, 153, 165, 485, 827, 831
AcoI	YGGCCR	2 cut(s)	561, 828
AcuI	CTGAAG	2 cut(s)	272, 600
AfaI	GTAC	2 cut(s)	546, 652
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	498, 710
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
Alw21I	GWGCWC	2 cut(s)	48, 290
Alw26I	GTCTC	1 cut(s)	829
AoxI	GGCC	2 cut(s)	561, 828
ApeKI	GCWGC	3 cut(s)	182, 371, 389
AsuHPI	GGTGA	3 cut(s)	392, 635, 758
BalI	TGGCCA	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	48, 290
Bbv12I	GWGCWC	2 cut(s)	48, 290
BbvI	GCAGC	3 cut(s)	194, 358, 376
BccI	CCATC	2 cut(s)	473, 814
BceAI	ACGGC	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	2 cut(s)	317, 716
BfmI	CTRYAG	3 cut(s)	195, 213, 549
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	7 cut(s)	84, 166, 183, 372, 390, 828, 831
BlpI	GCTNAGC	1 cut(s)	178
BlsI	GCNGC	7 cut(s)	85, 167, 184, 373, 391, 829, 832
BmcAI	AGTACT	1 cut(s)	652
BmsI	GCATC	2 cut(s)	629, 682
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	246, 401
Bpu1102I	GCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	60, 767
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	3 cut(s)	186, 450, 742
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	3 cut(s)	90, 300, 564
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	186, 450, 742
BseGI	GGATG	2 cut(s)	123, 446
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	192, 237, 506
BseNI	ACTGG	3 cut(s)	90, 300, 564
BseRI	GAGGAG	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	828
BseXI	GCAGC	3 cut(s)	194, 358, 376
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	833
Bsh1285I	CGRYCG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	563, 830
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	2 cut(s)	48, 290
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	829
BsnI	GGCC	2 cut(s)	563, 830
Bso31I	GGTCTC	1 cut(s)	829
Bsp1286I	GDGCHC	2 cut(s)	48, 290
Bsp143I	GATC	1 cut(s)	580
Bsp1720I	GCTNAGC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	8 cut(s)	55, 67, 83, 153, 165, 485, 827, 831
BspANI	GGCC	2 cut(s)	563, 830
BspCNI	CTCAG	3 cut(s)	191, 238, 507
BspFNI	CGCG	1 cut(s)	833
BspMAI	CTGCAG	1 cut(s)	217
BspQI	GCTCTTC	2 cut(s)	278, 516
BspTNI	GGTCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	90, 300, 564
BssECI	CCNNGG	3 cut(s)	186, 450, 742
BssMI	GATC	1 cut(s)	580
BssT1I	CCWWGG	3 cut(s)	186, 450, 742
Bst4CI	ACNGT	3 cut(s)	350, 444, 700
Bst6I	CTCTTC	3 cut(s)	214, 278, 516
BstDEI	CTNAG	5 cut(s)	178, 246, 401, 515, 647
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	123, 446
BstFNI	CGCG	1 cut(s)	833
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	1 cut(s)	580
BstMCI	CGRYCG	1 cut(s)	831
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 285
BstSFI	CTRYAG	3 cut(s)	195, 213, 549
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	3 cut(s)	194, 358, 376
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstZI	CGGCCG	1 cut(s)	828
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	563, 830
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	123, 446
BtsIMutI	CAGTG	2 cut(s)	355, 571
CciNI	GCGGCCGC	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	545, 651
CviAII	CATG	6 cut(s)	147, 280, 292, 451, 571, 766
CviQI	GTAC	2 cut(s)	545, 651
DdeI	CTNAG	5 cut(s)	178, 246, 401, 515, 647
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	561, 828
EagI	CGGCCG	1 cut(s)	828
Eam1104I	CTCTTC	3 cut(s)	214, 278, 516
EarI	CTCTTC	3 cut(s)	214, 278, 516
EciI	GGCGGA	2 cut(s)	56, 142
Ecl136II	GAGCTC	2 cut(s)	46, 288
EclXI	CGGCCG	1 cut(s)	828
Eco130I	CCWWGG	3 cut(s)	186, 450, 742
Eco24I	GRGCYC	2 cut(s)	48, 290
Eco31I	GGTCTC	1 cut(s)	829
Eco52I	CGGCCG	1 cut(s)	828
Eco53kI	GAGCTC	2 cut(s)	46, 288
Eco57I	CTGAAG	2 cut(s)	272, 600
EcoICRI	GAGCTC	2 cut(s)	46, 288
EcoT14I	CCWWGG	3 cut(s)	186, 450, 742
EcoT38I	GRGCYC	2 cut(s)	48, 290
ErhI	CCWWGG	3 cut(s)	186, 450, 742
FaeI	CATG	6 cut(s)	150, 283, 295, 454, 574, 769
FatI	CATG	6 cut(s)	146, 279, 291, 450, 570, 765
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	7 cut(s)	84, 166, 183, 372, 390, 828, 831
FokI	GGATG	2 cut(s)	110, 433
FriOI	GRGCYC	2 cut(s)	48, 290
Fsp4HI	GCNGC	7 cut(s)	84, 166, 183, 372, 390, 828, 831
FspBI	CTAG	2 cut(s)	317, 716
GluI	GCNGC	7 cut(s)	84, 166, 183, 372, 390, 828, 831
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	563, 830
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	6 cut(s)	150, 283, 295, 454, 574, 769
HinfI	GANTC	5 cut(s)	170, 383, 431, 525, 640
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	3 cut(s)	392, 635, 758
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	43, 105, 128, 160, 436, 492, 516
Hpy188III	TCNNGA	2 cut(s)	428, 629
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	73, 247
HpyCH4III	ACNGT	3 cut(s)	350, 444, 700
HpyCH4V	TGCA	3 cut(s)	215, 599, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 285
HpyF3I	CTNAG	5 cut(s)	178, 246, 401, 515, 647
Hsp92II	CATG	6 cut(s)	150, 283, 295, 454, 574, 769
Kzo9I	GATC	1 cut(s)	580
LguI	GCTCTTC	2 cut(s)	278, 516
LmnI	GCTCC	6 cut(s)	15, 44, 51, 155, 293, 318
Lsp1109I	GCAGC	3 cut(s)	194, 358, 376
LweI	GCATC	2 cut(s)	629, 682
MaeI	CTAG	2 cut(s)	317, 716
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	8 cut(s)	24, 201, 295, 503, 590, 674, 722, 826
MhlI	GDGCHC	2 cut(s)	48, 290
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	2 cut(s)	99, 725
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	1 cut(s)	844
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	2 cut(s)	174, 285
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	6 cut(s)	150, 283, 295, 454, 574, 769
NotI	GCGGCCGC	1 cut(s)	828
PciSI	GCTCTTC	2 cut(s)	278, 516
PfeI	GAWTC	4 cut(s)	170, 383, 431, 525
PkrI	GCNGC	7 cut(s)	85, 167, 184, 373, 391, 829, 832
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp124BI	GAGCTC	2 cut(s)	48, 290
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	546, 652
RsaNI	GTAC	2 cut(s)	545, 651
SacI	GAGCTC	2 cut(s)	48, 290
SapI	GCTCTTC	2 cut(s)	278, 516
SaqAI	TTAA	1 cut(s)	844
SatI	GCNGC	7 cut(s)	84, 166, 183, 372, 390, 828, 831
Sau3AI	GATC	1 cut(s)	580
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	1 cut(s)	634
SduI	GDGCHC	2 cut(s)	48, 290
SfaNI	GCATC	2 cut(s)	629, 682
SfcI	CTRYAG	3 cut(s)	195, 213, 549
SmlI	CTYRAG	2 cut(s)	75, 782
SmoI	CTYRAG	2 cut(s)	75, 782
Sse9I	AATT	2 cut(s)	99, 725
SsiI	CCGC	8 cut(s)	55, 67, 83, 153, 165, 485, 827, 831
SspMI	CTAG	2 cut(s)	317, 716
SstI	GAGCTC	2 cut(s)	48, 290
StyI	CCWWGG	3 cut(s)	186, 450, 742
TaaI	ACNGT	3 cut(s)	350, 444, 700
TaqI	TCGA	2 cut(s)	457, 576
TasI	AATT	2 cut(s)	99, 725
TatI	WGTACW	1 cut(s)	650
TauI	GCSGC	4 cut(s)	86, 168, 830, 833
TfiI	GAWTC	4 cut(s)	170, 383, 431, 525
Tru1I	TTAA	1 cut(s)	844
Tru9I	TTAA	1 cut(s)	844
TscAI	CASTG	2 cut(s)	355, 571
TseI	GCWGC	3 cut(s)	182, 371, 389
TspDTI	ATGAA	4 cut(s)	135, 296, 308, 675
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	2 cut(s)	355, 571
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 457
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	2 cut(s)	317, 716
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.