Rw2G054990
NAC Family

inactive shikimate kinase like 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013212
Physical Location & Seq
Forward (+)
82556780 .. 82559731
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054990.1

Sequence Viewer

Length: 879 bp
ATGGAGATAACAAGGACTCTCCTCCCTTCCTCCTCTTGCTCTAGTCTCCACCTCCGCACTCCGCTCCTCCATTTTCACGTCTCGCCTTCGCACCCACAGTCGTTACCCCAGGATGTCCTTCAGTCTCAGACCTCACTTCCCATTCCATCTCGCACCCGCTTCCGGAAACCTCTCGCCGCCTCCGATGGCACCACTTCCGCAACTAAGGTTGCTGTGGATGATCCCTCTCTTGCTGTGAAGAAGAAGGCAATGGATGTATCACCAGAACTCAAAGGAACTACCATATTCCTTGTGGGCATGAAGAGCTCCATAAAGACCAGTTTGGGGAAATTCCTCGCCAACTTGTTACGATACTATTACTTTGACAGTGATAGTTTGGTTGAGGAAGCTGCTGGCACTCAATCTGCCACCAAATCTTTAAGGGAGACTGACAAGAGTGGTTTCCAGGAGTCCGAGACTGAAGTGTTGAAGCAATTATCATCCATGGGTCGGTTAGTGGTCTGTGCTGGAGATGGTGCAACTCAGAGTTCAACAAATCTGGCTCTTTTAAGACATGGGATCACGATATGGATTGACGTACCTTTAGACATTGTGGCCAGGGGTGTGGTCGAAGATCAAACTCAGCTCTCTGCATACAATCTATCTGCTTCCGTATCCTATCCAGAGGTTTTGACTCACCTAAGTACTTCATATGAAGAGTTGAGAGGTGGATATGCAATAGCTGATGCAACCGTATCTCTTCAGCAAGTAGCAGGTAAGTTAGGTTATGATGAAATCGACGATGTAACCACCGAAGACATGGCTTTGGAGGTTCTCAAGGAGGTAGAGAAATTGACCAGAGTGAAAAAGATGATGGAAGCAGCAGCAAGACCTTTTTAA

Protein Analysis

292

Amino Acids

31.74

Weight (kDa)

5.74

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKI PF01202 103 - 224 2.3e-23 Shikimate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26900 AT3G26900 AT3G26900
fragaria_vesca FvH4_6g54030 FvH4_6g54030
malus_domestica MD09G1006100.v1.1 MD17G1010100.v1.1
prunus_persica Prupe.3G310900_v2.0.a1
pyrus_communis pycom17g00460
rosa_chinensis RchiOBHm_Chr2g0176211
rosa_laevigata RLG00000022390
rosa_multiflora Rmu_co8135912.1_g000001
rosa_rugosa Rorug02G0591800
rosa_samantha Rh2AG670400 Rh2BG681900 Rh2CG644700 Rh2DG695500
rosa_wichuraiana Rw2G054990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 64
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 5 cut(s) 55, 62, 157, 177, 198
AclWI GGATC 2 cut(s) 215, 566
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 3 cut(s) 104, 480, 725
AfaI GTAC 2 cut(s) 579, 685
AfiI CCNNNNNNNGG 3 cut(s) 162, 324, 489
AgsI TTSAA 2 cut(s) 469, 531
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 3 cut(s) 108, 444, 596
AluBI AGCT 4 cut(s) 306, 389, 625, 722
AluI AGCT 4 cut(s) 306, 389, 625, 722
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 5 cut(s) 50, 85, 129, 419, 449
AlwI GGATC 2 cut(s) 215, 566
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 1 cut(s) 594
ApeKI GCWGC 3 cut(s) 389, 860, 863
ApoI RAATTY 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 252, 668
BalI TGGCCA 1 cut(s) 596
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 376, 872, 875
BccI CCATC 4 cut(s) 154, 179, 506, 847
BciT130I CCWGG 3 cut(s) 110, 446, 598
BciVI GTATCC 1 cut(s) 664
BcoDI GTCTC 5 cut(s) 50, 85, 129, 419, 449
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 743
BfuI GTATCC 1 cut(s) 664
BisI GCNGC 4 cut(s) 177, 390, 861, 864
BlsI GCNGC 4 cut(s) 178, 391, 862, 865
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 3 cut(s) 110, 446, 598
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 110, 446, 598
BmsI GCATC 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 800
BsaJI CCNNGG 3 cut(s) 108, 483, 597
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 324, 489
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 3 cut(s) 110, 446, 598
BseDI CCNNGG 3 cut(s) 108, 483, 597
BseGI GGATG 4 cut(s) 118, 223, 259, 479
BseLI CCNNNNNNNGG 3 cut(s) 162, 324, 489
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 140, 536, 635
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 3 cut(s) 11, 22, 56
BseXI GCAGC 3 cut(s) 376, 872, 875
BshFI GGCC 1 cut(s) 596
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 162, 324, 489
BsmAI GTCTC 5 cut(s) 50, 85, 129, 419, 449
BsmBI CGTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 3 cut(s) 220, 558, 613
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 5 cut(s) 55, 62, 157, 177, 198
BspANI GGCC 1 cut(s) 596
BspCNI CTCAG 3 cut(s) 139, 535, 634
BspEI TCCGGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 2 cut(s) 215, 566
BspQI GCTCTTC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 3 cut(s) 108, 483, 597
BssMI GATC 3 cut(s) 220, 558, 613
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 110, 446, 598
Bst4CI ACNGT 3 cut(s) 99, 368, 733
Bst6I CTCTTC 3 cut(s) 296, 690, 744
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 5 cut(s) 126, 204, 522, 621, 680
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 4 cut(s) 118, 223, 259, 479
BstKTI GATC 3 cut(s) 223, 561, 616
BstMAI GTCTC 5 cut(s) 50, 85, 129, 419, 449
BstMBI GATC 3 cut(s) 220, 558, 613
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 3 cut(s) 110, 446, 598
BstSCI CCNGG 3 cut(s) 108, 444, 596
BstV1I GCAGC 3 cut(s) 376, 872, 875
BstV2I GAAGAC 1 cut(s) 801
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 1 cut(s) 596
BtgI CCRYGG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 4 cut(s) 118, 223, 259, 479
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 578, 684
CviAII CATG 4 cut(s) 298, 484, 554, 799
CviJI RGCY 7 cut(s) 306, 389, 542, 596, 625, 722, 803
CviKI_1 RGCY 7 cut(s) 306, 389, 542, 596, 625, 722, 803
CviQI GTAC 2 cut(s) 578, 684
DdeI CTNAG 5 cut(s) 126, 204, 522, 621, 680
DpnI GATC 3 cut(s) 222, 560, 615
DpnII GATC 3 cut(s) 220, 558, 613
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 3 cut(s) 296, 690, 744
EarI CTCTTC 3 cut(s) 296, 690, 744
Ecl136II GAGCTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 306
Eco57I CTGAAG 3 cut(s) 104, 480, 725
EcoICRI GAGCTC 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 108, 444, 596
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 4 cut(s) 301, 487, 557, 802
FatI CATG 4 cut(s) 297, 483, 553, 798
FauI CCCGC 1 cut(s) 164
FauNDI CATATG 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 177, 390, 861, 864
FokI GGATG 4 cut(s) 125, 230, 266, 466
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 4 cut(s) 177, 390, 861, 864
FspBI CTAG 1 cut(s) 42
GluI GCNGC 4 cut(s) 177, 390, 861, 864
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 596
HapII CCGG 1 cut(s) 163
Hin1II CATG 4 cut(s) 301, 487, 557, 802
HinfI GANTC 3 cut(s) 16, 449, 673
HpaII CCGG 1 cut(s) 163
HphI GGTGA 2 cut(s) 252, 668
Hpy188I TCNGA 4 cut(s) 129, 184, 454, 525
Hpy188III TCNNGA 3 cut(s) 163, 562, 662
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 4 cut(s) 36, 96, 128, 238
HpyCH4III ACNGT 3 cut(s) 99, 368, 733
HpyCH4IV ACGT 2 cut(s) 78, 576
HpyCH4V TGCA 4 cut(s) 518, 632, 716, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 5 cut(s) 126, 204, 522, 621, 680
HpySE526I ACGT 2 cut(s) 78, 576
Hsp92II CATG 4 cut(s) 301, 487, 557, 802
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 220, 558, 613
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 69, 311
Lsp1109I GCAGC 3 cut(s) 376, 872, 875
LweI GCATC 1 cut(s) 715
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 78, 576
MaeIII GTNAC 3 cut(s) 102, 345, 784
MalI GATC 3 cut(s) 222, 560, 615
MbiI CCGCTC 1 cut(s) 64
MboI GATC 3 cut(s) 220, 558, 613
MboII GAAGA 7 cut(s) 250, 253, 313, 623, 707, 731, 806
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 3 cut(s) 329, 473, 830
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 3 cut(s) 10, 458, 667
Mox20I TGGCCA 1 cut(s) 596
MroI TCCGGA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 596
MseI TTAA 3 cut(s) 419, 548, 877
Msp20I TGGCCA 1 cut(s) 596
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 3 cut(s) 110, 446, 598
MvaI CCWGG 3 cut(s) 110, 446, 598
MwoI GCNNNNNNNGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 691
NdeII GATC 3 cut(s) 220, 558, 613
NlaIII CATG 4 cut(s) 301, 487, 557, 802
NlaIV GGNNCC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 4 cut(s) 178, 391, 862, 865
PleI GAGTC 3 cut(s) 10, 457, 667
PpsI GAGTC 3 cut(s) 10, 457, 667
Psp124BI GAGCTC 1 cut(s) 308
Psp6I CCWGG 3 cut(s) 108, 444, 596
PspGI CCWGG 3 cut(s) 108, 444, 596
PspN4I GGNNCC 1 cut(s) 190
RsaI GTAC 2 cut(s) 579, 685
RsaNI GTAC 2 cut(s) 578, 684
SacI GAGCTC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 419, 548, 877
SatI GCNGC 4 cut(s) 177, 390, 861, 864
Sau3AI GATC 3 cut(s) 220, 558, 613
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 3 cut(s) 10, 458, 667
ScrFI CCNGG 3 cut(s) 110, 446, 598
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 3 cut(s) 329, 473, 830
SsiI CCGC 5 cut(s) 55, 62, 157, 177, 198
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 108, 444, 596
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 3 cut(s) 99, 368, 733
TaiI ACGT 2 cut(s) 81, 579
TaqI TCGA 2 cut(s) 609, 777
TasI AATT 3 cut(s) 329, 473, 830
TatI WGTACW 1 cut(s) 683
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 419, 548, 877
Tru9I TTAA 3 cut(s) 419, 548, 877
TscAI CASTG 1 cut(s) 373
TseI GCWGC 3 cut(s) 389, 860, 863
TspDTI ATGAA 4 cut(s) 314, 678, 708, 786
TspGWI ACGGA 1 cut(s) 640
TspRI CASTG 1 cut(s) 373
XapI RAATTY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 289, 796
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.