AT3G27150

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10009442 .. 10011807
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27150.2

Sequence Viewer

Length: 1269 bp
ATGTTGACGCTAGGAGAAGATCAAATCGGTAGAATTGGGGCAAGCTCTAGCTGGTCTAGGTCGAAGAAGCTTCGGGTTCATCGCTACGAGATTCCTGATCTAAACGTAGAACCTAGTTTGGATTGGGATGGGGAAGAAACAGGGGAGGCCACTAAGGCTCTGAGCAGTACATGTTTGAAACCTAAGGATGCAGATTATTGTTTACTAAATGTTCCTCAGCTCGTATACGAGTTAGAGGTCGAGATACTCGCACGCGTGCCGCGTTTCGAGTATTGGAAACTAAAGTTACTTAATAAGGGGTTTTCGCGTTTGCTAAAGAGTGATGAGATTTTCAAGGTGAGGCGCGAGCGCGGTGTAGTTGAACCGTCTGTCTTTATGTTGTCGAGTGGTGATACGTGTTGGACGATGTTTGACAAGGGCTTTGGGAACTGCCAGAAGCTTCCGGAACTTCCTTCTGACATATGCTTCCTCCATGGAGATAAAGAATCGCTTTGCGCTGGAACTCATTTGATTGTCACTGGGAAAGAGGAGAAGAGCATTGCGCTATGGCGGTACGAGTTGGAGACGAGCAAATGGTTCAAAGGTCCCGCGATGATCACACCGCGAATCTTGTTTGCTTCTGCTACTTGTGGGACTGTTGTGTTTGTAGCTGGTGGGTTGAAAATTGAAGGAAACGGGACCATGGAAGTTGTGGACAGCGTTGAGAAGTATGACTCTAAGACCAAAACGTGGACGCTTCTACGCGGAATGCATAAGCGGCGGAAATTCTGCTCTGGGTGTTACTTGCGTGGCAAGTTTTATGTTCTCGGAGGCCGGGATGAGAATGGTCAAAACCTAACTTGCGGAGAAAGTTACGACGAGAAGACGAACACATGGGAACTCATACCGGACATTCTCAAAGACATGTCTTTCTCTTCTGTCCAATCTCCACCGCTCATCGCAGTGGTTGGGGATGATCTTTACTCATTGGAAACCTCGGCGAACGAGCTCCGCGTTTATGATGCAAATGCAAACTCTTGGAAGAAGCTTGGAGATGTGCCCGTGAGGGCTAAGTCTAATGGAGGATGGGGCGTTGCGTTTAAGTCACTTGGAGATAAGTTGCTTGTGATTGGAGCATCAGCCGGTCCGTCTAGGGCCGAGACAATGTCGGTTTACACGAGCCGTCCATCCGCAAATCCTGCGAACAAGCTGTATTGGGAGGAGTCTAAACGTTGCTGTGGCGTTAGGTTCAATCATTTTATCCTAAACTGTTGTGTAATGATTGCGTAA

Protein Analysis

422

Amino Acids

47.18

Weight (kDa)

8.1

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 146 - 252 3.4e-06 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 175 - 371 1.8e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 176 - 371 1.5e-15 FKB95, Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 212 - 293 5.4e-07 Attractin/LZTR1 beta-propeller
Kelch_1 PF01344 253 - 297 2.2e-10 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 729
AccBSI CCGCTC 1 cut(s) 934
AccI GTMKAC 1 cut(s) 225
AccII CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
AccIII TCCGGA 1 cut(s) 442
AclI AACGTT 1 cut(s) 1210
AcsI RAATTY 1 cut(s) 764
AfaI GTAC 2 cut(s) 169, 554
AfiI CCNNNNNNNGG 1 cut(s) 729
AflIII ACRYGT 4 cut(s) 170, 253, 395, 903
AgsI TTSAA 7 cut(s) 178, 334, 362, 580, 661, 668, 1231
AluBI AGCT 9 cut(s) 45, 51, 70, 220, 439, 650, 988, 1027, 1189
AluI AGCT 9 cut(s) 45, 51, 70, 220, 439, 650, 988, 1027, 1189
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 2 cut(s) 557, 1133
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 3 cut(s) 147, 811, 1134
ApoI RAATTY 1 cut(s) 764
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AspLEI GCGC 4 cut(s) 345, 351, 497, 544
AspS9I GGNCC 4 cut(s) 584, 678, 1124, 1134
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 349, 401
AvaII GGWCC 3 cut(s) 584, 678, 1124
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 1041
BanII GRGCYC 1 cut(s) 990
BauI CACGAG 1 cut(s) 1156
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 1 cut(s) 990
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 122, 1059, 1174
BceAI ACGGC 1 cut(s) 1146
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 557, 1133
BfaI CTAG 5 cut(s) 11, 48, 57, 114, 1131
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 2 cut(s) 260, 758
BlsI GCNGC 2 cut(s) 261, 759
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 3 cut(s) 584, 678, 1124
BmgT120I GGNCC 4 cut(s) 584, 678, 1124, 1134
BmiI GGNNCC 2 cut(s) 586, 679
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 3 cut(s) 178, 991, 1124
BmuI ACTGGG 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 869
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 472, 681, 975
BsaWI WCCGGW 2 cut(s) 442, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse118I RCCGGY 1 cut(s) 1121
Bse1I ACTGG 1 cut(s) 523
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 472, 681, 975
BseGI GGATG 6 cut(s) 133, 193, 823, 958, 1070, 1166
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 152, 230
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 542, 1214
BseSI GKGCMC 1 cut(s) 1041
Bsh1236I CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
BshFI GGCC 3 cut(s) 149, 813, 1136
BsiHKAI GWGCWC 1 cut(s) 990
BsiSI CCGG 4 cut(s) 443, 814, 887, 1122
BslFI GGGAC 3 cut(s) 570, 646, 691
BslI CCNNNNNNNGG 1 cut(s) 729
BsmAI GTCTC 2 cut(s) 557, 1133
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 3 cut(s) 570, 646, 691
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 3 cut(s) 149, 813, 1136
Bsp1286I GDGCHC 2 cut(s) 990, 1041
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 4 cut(s) 19, 97, 594, 955
Bsp19I CCATGG 2 cut(s) 472, 681
BspANI GGCC 3 cut(s) 149, 813, 1136
BspCNI CTCAG 2 cut(s) 153, 229
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
BspLI GGNNCC 2 cut(s) 586, 679
BspQI GCTCTTC 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 934
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 1121
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 1121
BssECI CCNNGG 3 cut(s) 472, 681, 975
BssMI GATC 4 cut(s) 19, 97, 594, 955
BssNAI GTATAC 1 cut(s) 226
BssSI CACGAG 1 cut(s) 1156
BssT1I CCWWGG 2 cut(s) 472, 681
Bst1107I GTATAC 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 1156
Bst4CI ACNGT 3 cut(s) 366, 637, 1250
Bst6I CTCTTC 2 cut(s) 527, 919
BstAPI GCANNNNNTGC 1 cut(s) 1178
BstBAI YACGTR 1 cut(s) 396
BstC8I GCNNGC 4 cut(s) 43, 253, 257, 347
BstDEI CTNAG 6 cut(s) 153, 161, 183, 216, 717, 1050
BstDSI CCRYGG 2 cut(s) 472, 681
BstF5I GGATG 6 cut(s) 133, 193, 823, 958, 1070, 1166
BstFNI CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
BstHHI GCGC 4 cut(s) 345, 351, 497, 544
BstKTI GATC 4 cut(s) 22, 100, 597, 958
BstMAI GTCTC 2 cut(s) 557, 1133
BstMBI GATC 4 cut(s) 19, 97, 594, 955
BstMWI GCNNNNNNNGC 3 cut(s) 155, 757, 1178
BstNSI RCATGY 2 cut(s) 174, 907
BstSCI CCNGG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 1041
BstUI CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
BstV2I GAAGAC 1 cut(s) 869
BstZ17I GTATAC 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 149, 813, 1136
BtgI CCRYGG 2 cut(s) 472, 681
BtgZI GCGATG 3 cut(s) 65, 605, 922
BtsCI GGATG 6 cut(s) 133, 193, 823, 958, 1070, 1166
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 2 cut(s) 516, 948
Cac8I GCNNGC 4 cut(s) 43, 253, 257, 347
CfoI GCGC 4 cut(s) 345, 351, 497, 544
Cfr10I RCCGGY 1 cut(s) 1121
Cfr13I GGNCC 4 cut(s) 584, 678, 1124, 1134
CpoI CGGWCCG 1 cut(s) 1124
CseI GACGC 2 cut(s) 16, 742
Csp6I GTAC 2 cut(s) 168, 553
CspI CGGWCCG 1 cut(s) 1124
CviAII CATG 5 cut(s) 171, 473, 682, 873, 904
CviQI GTAC 2 cut(s) 168, 553
DdeI CTNAG 6 cut(s) 153, 161, 183, 216, 717, 1050
DpnI GATC 4 cut(s) 21, 99, 596, 957
DpnII GATC 4 cut(s) 19, 97, 594, 955
Eam1104I CTCTTC 2 cut(s) 527, 919
EarI CTCTTC 2 cut(s) 527, 919
EciI GGCGGA 1 cut(s) 775
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 2 cut(s) 472, 681
Eco24I GRGCYC 1 cut(s) 990
Eco47I GGWCC 3 cut(s) 584, 678, 1124
Eco53kI GAGCTC 1 cut(s) 988
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 988
EcoO109I RGGNCCY 1 cut(s) 584
EcoT14I CCWWGG 2 cut(s) 472, 681
EcoT22I ATGCAT 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 2 cut(s) 472, 681
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 5 cut(s) 174, 476, 685, 876, 907
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 3 cut(s) 570, 646, 691
FatI CATG 5 cut(s) 170, 472, 681, 872, 903
FauI CCCGC 1 cut(s) 595
FauNDI CATATG 1 cut(s) 461
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 260, 758
FokI GGATG 6 cut(s) 140, 200, 830, 965, 1077, 1153
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 2 cut(s) 260, 758
FspBI CTAG 5 cut(s) 11, 48, 57, 114, 1131
GlaI GCGC 4 cut(s) 344, 350, 496, 543
GluI GCNGC 2 cut(s) 260, 758
HaeIII GGCC 3 cut(s) 149, 813, 1136
HapII CCGG 4 cut(s) 443, 814, 887, 1122
HgaI GACGC 2 cut(s) 16, 742
HhaI GCGC 4 cut(s) 345, 351, 497, 544
Hin1II CATG 5 cut(s) 174, 476, 685, 876, 907
Hin6I GCGC 4 cut(s) 343, 349, 495, 542
HinP1I GCGC 4 cut(s) 343, 349, 495, 542
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 3 cut(s) 68, 437, 1025
HinfI GANTC 5 cut(s) 91, 485, 606, 713, 1202
HpaII CCGG 4 cut(s) 443, 814, 887, 1122
HphI GGTGA 2 cut(s) 349, 401
Hpy166II GTNNAC 6 cut(s) 6, 203, 226, 694, 732, 1153
Hpy188I TCNGA 3 cut(s) 162, 457, 809
Hpy188III TCNNGA 3 cut(s) 95, 241, 443
Hpy8I GTNNAC 6 cut(s) 6, 203, 226, 694, 732, 1153
Hpy99I CGWCG 1 cut(s) 860
HpyAV CCTTC 2 cut(s) 462, 662
HpyCH4III ACNGT 3 cut(s) 366, 637, 1250
HpyCH4IV ACGT 4 cut(s) 105, 395, 728, 1210
HpyCH4V TGCA 4 cut(s) 191, 751, 1004, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 757, 1178
HpyF3I CTNAG 6 cut(s) 153, 161, 183, 216, 717, 1050
HpySE526I ACGT 4 cut(s) 105, 395, 728, 1210
Hsp92II CATG 5 cut(s) 174, 476, 685, 876, 907
HspAI GCGC 4 cut(s) 343, 349, 495, 542
Kpn2I TCCGGA 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 4 cut(s) 19, 97, 594, 955
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 2 cut(s) 993, 1112
LweI GCATC 3 cut(s) 178, 991, 1124
MaeI CTAG 5 cut(s) 11, 48, 57, 114, 1131
MaeII ACGT 4 cut(s) 105, 395, 728, 1210
MaeIII GTNAC 5 cut(s) 285, 514, 779, 851, 1083
MalI GATC 4 cut(s) 21, 99, 596, 957
MbiI CCGCTC 1 cut(s) 934
MboI GATC 4 cut(s) 19, 97, 594, 955
MboII GAAGA 7 cut(s) 29, 76, 146, 544, 874, 906, 1033
MhlI GDGCHC 2 cut(s) 990, 1041
MluCI AATT 3 cut(s) 33, 663, 764
MluI ACGCGT 1 cut(s) 253
MlyI GAGTC 2 cut(s) 707, 1211
MmeI TCCRAC 2 cut(s) 380, 540
Mph1103I ATGCAT 1 cut(s) 753
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 291, 1080
MslI CAYNNNNRTG 1 cut(s) 941
MspI CCGG 4 cut(s) 443, 814, 887, 1122
MspR9I CCNGG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 753
MvnI CGCG 9 cut(s) 255, 262, 307, 345, 351, 590, 604, 744, 993
MwoI GCNNNNNNNGC 3 cut(s) 155, 757, 1178
NciI CCSGG 1 cut(s) 815
NcoI CCATGG 2 cut(s) 472, 681
NdeI CATATG 1 cut(s) 461
NdeII GATC 4 cut(s) 19, 97, 594, 955
NlaIII CATG 5 cut(s) 174, 476, 685, 876, 907
NlaIV GGNNCC 2 cut(s) 586, 679
NmeAIII GCCGAG 2 cut(s) 956, 1162
NmuCI GTSAC 2 cut(s) 514, 1083
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 2 cut(s) 174, 907
PciI ACATGT 2 cut(s) 170, 903
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 4 cut(s) 259, 401, 990, 1154
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 91, 485, 606
PflFI GACNNNGTC 1 cut(s) 1144
PflMI CCANNNNNTGG 1 cut(s) 729
PkrI GCNGC 2 cut(s) 261, 759
PleI GAGTC 2 cut(s) 707, 1210
PpsI GAGTC 2 cut(s) 707, 1210
Ppu21I YACGTR 1 cut(s) 396
PpuMI RGGWCCY 1 cut(s) 584
PscI ACATGT 2 cut(s) 170, 903
Psp124BI GAGCTC 1 cut(s) 990
Psp1406I AACGTT 1 cut(s) 1210
Psp5II RGGWCCY 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 586, 679
PspPI GGNCC 4 cut(s) 584, 678, 1124, 1134
PspPPI RGGWCCY 1 cut(s) 584
PsyI GACNNNGTC 1 cut(s) 1144
RsaI GTAC 2 cut(s) 169, 554
RsaNI GTAC 2 cut(s) 168, 553
RseI CAYNNNNRTG 1 cut(s) 941
Rsr2I CGGWCCG 1 cut(s) 1124
RsrII CGGWCCG 1 cut(s) 1124
SacI GAGCTC 1 cut(s) 990
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 2 cut(s) 291, 1080
SatI GCNGC 2 cut(s) 260, 758
Sau3AI GATC 4 cut(s) 19, 97, 594, 955
Sau96I GGNCC 4 cut(s) 584, 678, 1124, 1134
SchI GAGTC 2 cut(s) 707, 1211
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 990, 1041
SfaNI GCATC 3 cut(s) 178, 991, 1124
SinI GGWCC 3 cut(s) 584, 678, 1124
SmiMI CAYNNNNRTG 1 cut(s) 941
Sse9I AATT 3 cut(s) 33, 663, 764
SspMI CTAG 5 cut(s) 11, 48, 57, 114, 1131
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 2 cut(s) 472, 681
TaaI ACNGT 3 cut(s) 366, 637, 1250
TaiI ACGT 4 cut(s) 108, 398, 731, 1213
TaqI TCGA 4 cut(s) 62, 240, 267, 383
TasI AATT 3 cut(s) 33, 663, 764
TatI WGTACW 1 cut(s) 167
TauI GCSGC 2 cut(s) 262, 760
TfiI GAWTC 3 cut(s) 91, 485, 606
Tru1I TTAA 2 cut(s) 291, 1080
Tru9I TTAA 2 cut(s) 291, 1080
TscAI CASTG 2 cut(s) 523, 948
TseFI GTSAC 2 cut(s) 514, 1083
Tsp45I GTSAC 2 cut(s) 514, 1083
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 2 cut(s) 523, 948
Tth111I GACNNNGTC 1 cut(s) 1144
Van91I CCANNNNNTGG 1 cut(s) 729
VpaK11BI GGWCC 3 cut(s) 584, 678, 1124
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 174, 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 5 cut(s) 11, 48, 57, 114, 1131
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.