Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005792

Physical Location & Seq

Genomic Coordinates Reverse (-)

70724269 .. 70725421

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0584400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTTGGGGTATTTGCTTTATGCCAACCCTTGTTTATTCTTGGTACTAGTCTGCCTTTTCCAGAAAAATTGAAGGTGAAGCTGAAGAAGGGCAGACAGTGCCACTATGCGAAAGCGGTATGGAACTCAGATCATAAGAAGCCTTTTACCGTGAACCTCAGTTCCACTATTGATGCACCTCTGTATGAGTCCCCTGAGGTTTCATTTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCACTTTTTCCAGACATGGAGGACCAGCAAATTAGCAAGGAAGAGTGGAGGATTCAAATCCCAACCATGCAAGTCTTGTTCCTGTCTATCTACTTTGGAATTTACATCAAGTTAAGATTCAAATCCATGGGGAAAGACTACCCTCCTCATGTTCCTCATCACATCCCCAAAATCACTGAGCTTGAAACTACAAGATGGGAACTTGGGGGGATCCCTGAGGAGTACCAGCCGCGTGACTTGAGCTTCTCCTTCAACGGAACCATATATCCTGATAGAAAGCAAGGAACAAAAAGCATACTTAGAGGTCAGTTTGACATAAACATGAGCTTTATTGTATCACCTCTGCTTGGTTGGATTCCTCATACTGTCATGCAGAGCCTTGCAGAAGCGCTGGTTAAGAAAGCGATGGCGGATTCGACCTCAAATTCCAGATTGGTAGAAGACTATGATGAATTCAAGACGGAGAAACTCAAGAATGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

242

Amino Acids

27.96

Weight (kDa)

7.02

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1997	PF09366	69 - 233	2e-21	Protein of unknown function (DUF1997)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27150 AT3G27150 AT5G40680
fragaria_vesca	FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292
malus_domestica	MD09G1011800.v1.1 MD09G1011900.v1.1 MD17G1012500.v1.1
prunus_persica	Prupe.3G305200_v2.0.a1 Prupe.3G305200_v2.0.a1
pyrus_communis	pycom111g01010 pycom111g01020 pycom17g01000
rosa_chinensis	RchiOBHm_Chr2g0175451
rosa_laevigata	RLG00000022328
rosa_multiflora	Rmu_sc0003512.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077320
rosa_rugosa	Rorug02G0584300 Rorug02G0584400 Rorug02G0584500
rosa_samantha	Rh2AG664300 Rh2BG675000 Rh2CG638300 Rh2DG689000
rosa_wichuraiana	Rw2G054440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	475
AciI	CCGC	3 cut(s)	116, 473, 653
AclWI	GGATC	2 cut(s)	448, 461
AcsI	RAATTY	3 cut(s)	342, 667, 695
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	46, 467
AfeI	AGCGCT	1 cut(s)	633
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	6 cut(s)	73, 299, 364, 428, 496, 700
AhlI	ACTAGT	1 cut(s)	47
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 493, 525
AluBI	AGCT	4 cut(s)	82, 424, 486, 570
AluI	AGCT	4 cut(s)	82, 424, 486, 570
AlwI	GGATC	2 cut(s)	448, 461
Aor51HI	AGCGCT	1 cut(s)	633
ApoI	RAATTY	3 cut(s)	342, 667, 695
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	88, 573
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	2 cut(s)	195, 459
BamHI	GGATCC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	690
BccI	CCATC	2 cut(s)	432, 643
BclI	TGATCA	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	635
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	455, 502
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	502, 698
BsaBI	GATNNNNATC	2 cut(s)	299, 364
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse21I	CCTNAGG	2 cut(s)	195, 459
Bse8I	GATNNNNATC	2 cut(s)	299, 364
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	229, 405
BseJI	GATNNNNATC	2 cut(s)	299, 364
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	5 cut(s)	141, 172, 186, 411, 450
BseRI	GAGGAG	2 cut(s)	378, 476
Bsh1236I	CGCG	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	130, 208, 453
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	3 cut(s)	116, 473, 653
BspCNI	CTCAG	5 cut(s)	140, 171, 187, 412, 451
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	455, 502
BspPI	GGATC	2 cut(s)	448, 461
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	130, 208, 453
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	99, 151, 610
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstDEI	CTNAG	6 cut(s)	127, 158, 195, 420, 459, 542
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	229, 405
BstFNI	CGCG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	3 cut(s)	133, 211, 456
BstMBI	GATC	3 cut(s)	130, 208, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu36I	CCTNAGG	2 cut(s)	195, 459
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	229, 405
BtsIMutI	CAGTG	2 cut(s)	104, 417
CfoI	GCGC	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	45, 466
CviAII	CATG	6 cut(s)	259, 310, 370, 392, 565, 613
CviJI	RGCY	7 cut(s)	82, 142, 424, 472, 486, 570, 621
CviKI_1	RGCY	7 cut(s)	82, 142, 424, 472, 486, 570, 621
CviQI	GTAC	2 cut(s)	45, 466
DdeI	CTNAG	6 cut(s)	127, 158, 195, 420, 459, 542
DpnI	GATC	3 cut(s)	132, 210, 455
DpnII	GATC	3 cut(s)	130, 208, 453
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	265
Eco47III	AGCGCT	1 cut(s)	633
Eco57I	CTGAAG	1 cut(s)	104
Eco81I	CCTNAGG	2 cut(s)	195, 459
EcoRI	GAATTC	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	6 cut(s)	262, 313, 373, 395, 568, 616
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	6 cut(s)	258, 309, 369, 391, 564, 612
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	236, 392
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	635
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	6 cut(s)	262, 313, 373, 395, 568, 616
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	5 cut(s)	188, 295, 360, 598, 656
HphI	GGTGA	2 cut(s)	88, 573
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	6 cut(s)	62, 254, 512, 672, 700, 715
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	67, 82, 502
HpyCH4III	ACNGT	3 cut(s)	99, 151, 610
HpyCH4V	TGCA	4 cut(s)	176, 313, 616, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	6 cut(s)	127, 158, 195, 420, 459, 542
Hsp92II	CATG	6 cut(s)	262, 313, 373, 395, 568, 616
HspAI	GCGC	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	130, 208, 453
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	3 cut(s)	132, 210, 455
MboI	GATC	3 cut(s)	130, 208, 453
MboII	GAAGA	3 cut(s)	97, 296, 695
MflI	RGATCY	1 cut(s)	453
MluCI	AATT	5 cut(s)	68, 273, 342, 667, 695
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	575
MseI	TTAA	3 cut(s)	240, 356, 639
MslI	CAYNNNNRTG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	130, 208, 453
NlaIII	CATG	6 cut(s)	262, 313, 373, 395, 568, 616
NlaIV	GGNNCC	2 cut(s)	455, 502
NmuCI	GTSAC	1 cut(s)	476
PfeI	GAWTC	4 cut(s)	295, 360, 598, 656
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	455, 502
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	46, 467
RsaNI	GTAC	2 cut(s)	45, 466
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	240, 356, 639
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	130, 208, 453
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	481, 713
SmoI	CTYRAG	2 cut(s)	481, 713
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	5 cut(s)	68, 273, 342, 667, 695
SsiI	CCGC	3 cut(s)	116, 473, 653
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	99, 151, 610
TaqI	TCGA	1 cut(s)	659
TasI	AATT	5 cut(s)	68, 273, 342, 667, 695
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	4 cut(s)	295, 360, 598, 656
Tru1I	TTAA	3 cut(s)	240, 356, 639
Tru9I	TTAA	3 cut(s)	240, 356, 639
TscAI	CASTG	2 cut(s)	104, 424
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	192, 240, 708
TspGWI	ACGGA	2 cut(s)	513, 719
TspRI	CASTG	2 cut(s)	104, 424
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	342, 667, 695
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.