FvH4_6g53292

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39106154 .. 39109084
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53292.t3

Sequence Viewer

Length: 1263 bp
ATGTCAAAAGAAAACAGAAACTCTAACTTTGGAGGTTCTGGGTTTGGTTACCATACCAGCCCTCCAGAAAAGGTTAGGAGAAGATCAAGCATGAGCAGCAGCTTTGATGGATTCTCATTTTCATCCAAGGAGCTCATGCAGCGTGATTGTGCCTTAACCTTATCATTGGGTACTTTTACAGTGCCTAAACCGAAGGATGCAGATTATTGTGACTCAATCCCTCCCCTCGTTGAAGAGTTGGAGGCCTTGATCTTGGCCAGGGTTCCGAGGTCTGAGTATTGGAAGTTCTTCTTGGTGAACAAGCGCTTCTTGGCGCTTTTGAAGAGTGGAGAGCTGTACAAGATCAGGAGTGAACTCGGCCTCAAAGAGCCGTCTGTTTTCGTGTCCCCTAGCGGCGAGAGAACATGGTGGGAATTCGACAGGCAGTTCAAGTCCTGCAAGAAGCTCCCAATCTTACCCGCAGAGGATTGCTTCATCCGCGGTGATAGGGAATCGCTTTGTGCAGGGACTCATCTACTAGTCTCTGGCAGAGAGATTGAGGGGCTAGTTGTGTGGAGGTATGATATGGAAGCAAACATTTGGTCAAGAGGTCCTTCCATGATCAATCCAAGGTGCTTGTTTGCTTCTGCTACATGTGGTTCCTATGCATATGTAGCCGGTGGGTTTGGAATGGTGGCAACAGGTTGGGAAGTTATGGATTCTGCTGAGAGATACAATCCGGGGACTAAATCCTGGGAGCCTCTCCCAAACATGATCCGAAAGAGAAGGTTTTGCTCCGGCTGTTACATGGACAACAAGTTCCATGTGATTGGTGGGAGAAACCCTGAGGGAAGAGATCTCAGTTGTGCAGAAGCCTTTGATATCGAAAAGAAGACATGGGAACTGATCCCAGACATGTTAGAAGTAGATGGTGCTGAAGACCAAGCTTTGAATAACCAATCCCCGCCTCTCATTGCGGTTGTGAACAACGAGCTCTACTCACTCAAGACCCTCACAAACGAGCTCAAGGTGTACATGAAGAGAAGCAAATCATGGAAGAAGTTGGGAACTGTTCCGGTGAGGGCTGATACTACACTAGGATGGGGAATAGCTTTCAAGTCTCTGGGGAATGAGCTACTCGTCATACAGTCTTCAGCACATGGCCCTTCTCTGTTATACACTTGCTGCCCTGATCCAAATGCTGACGAGTTGCAGTGGGAAGCTCTTGAACATGGCAAAAACCCTACCTGCTTCATCGTCAACTGTTCTGTCATGGCAGCTTGA

Protein Analysis

421

Amino Acids

47.14

Weight (kDa)

6.94

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 179 - 360 9.7e-09 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 184 - 375 6.8e-14 FKB95, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 184 - 298 8.8e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 203 - 251 3e-10 Kelch motif
Kelch_1 PF01344 255 - 299 3.8e-09 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1235
AccII CGCG 1 cut(s) 480
AciI CCGC 6 cut(s) 393, 459, 478, 480, 944, 956
AclWI GGATC 3 cut(s) 748, 880, 1166
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 2 cut(s) 936, 1116
AfaI GTAC 3 cut(s) 172, 338, 1013
AfeI AGCGCT 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 632, 894
AgsI TTSAA 6 cut(s) 233, 322, 430, 931, 1096, 1208
AhlI ACTAGT 1 cut(s) 517
AjnI CCWGG 2 cut(s) 257, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
Alw21I GWGCWC 3 cut(s) 135, 975, 1005
Alw26I GTCTC 2 cut(s) 526, 1104
AlwI GGATC 3 cut(s) 748, 880, 1166
Aor51HI AGCGCT 1 cut(s) 305
AoxI GGCC 4 cut(s) 243, 255, 358, 1141
ApeKI GCWGC 5 cut(s) 96, 99, 139, 1164, 1256
ApoI RAATTY 1 cut(s) 413
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 306, 316
AspS9I GGNCC 2 cut(s) 590, 1142
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 3 cut(s) 307, 494, 1069
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 825
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 3 cut(s) 135, 975, 1005
BbsI GAAGAC 3 cut(s) 878, 924, 1122
Bbv12I GWGCWC 3 cut(s) 135, 975, 1005
BbvI GCAGC 4 cut(s) 108, 111, 151, 1151
BccI CCATC 3 cut(s) 101, 902, 1074
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 2 cut(s) 259, 733
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 526, 1104
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 4 cut(s) 390, 518, 545, 1076
BfoI RGCGCY 2 cut(s) 307, 317
BfuAI ACCTGC 1 cut(s) 1235
BglII AGATCT 1 cut(s) 835
BisI GCNGC 6 cut(s) 97, 100, 140, 394, 1165, 1257
BlsI GCNGC 6 cut(s) 98, 101, 141, 395, 1166, 1258
Bme1390I CCNGG 3 cut(s) 259, 720, 733
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 590, 1142
BmiI GGNNCC 3 cut(s) 264, 640, 738
BmrFI CCNGG 3 cut(s) 259, 720, 733
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 3 cut(s) 878, 924, 1122
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 968, 989
BpuMI CCSGG 1 cut(s) 720
BsaJI CCNNGG 7 cut(s) 126, 258, 266, 478, 608, 719, 732
BsaWI WCCGGW 1 cut(s) 1054
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bse118I RCCGGY 1 cut(s) 656
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 2 cut(s) 259, 733
BseDI CCNNGG 7 cut(s) 126, 258, 266, 478, 608, 719, 732
BseGI GGATG 4 cut(s) 122, 202, 474, 1085
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 4 cut(s) 264, 696, 816, 853
BseXI GCAGC 4 cut(s) 108, 111, 151, 1151
BsgI GTGCAG 2 cut(s) 522, 867
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 4 cut(s) 245, 257, 360, 1143
BsiHKAI GWGCWC 3 cut(s) 135, 975, 1005
BsiSI CCGG 4 cut(s) 657, 719, 777, 1055
BslFI GGGAC 3 cut(s) 370, 520, 736
BsmAI GTCTC 2 cut(s) 526, 1104
BsmFI GGGAC 3 cut(s) 370, 520, 736
BsnI GGCC 4 cut(s) 245, 257, 360, 1143
Bsp1286I GDGCHC 3 cut(s) 135, 975, 1005
Bsp1407I TGTACA 2 cut(s) 336, 1011
Bsp143I GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
BspACI CCGC 6 cut(s) 393, 459, 478, 480, 944, 956
BspANI GGCC 4 cut(s) 245, 257, 360, 1143
BspCNI CTCAG 4 cut(s) 265, 697, 817, 852
BspFNI CGCG 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 264, 640, 738
BspMI ACCTGC 1 cut(s) 1235
BspPI GGATC 3 cut(s) 748, 880, 1166
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 656
BsrGI TGTACA 2 cut(s) 336, 1011
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 7 cut(s) 126, 258, 266, 478, 608, 719, 732
BssMI GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
BssT1I CCWWGG 2 cut(s) 126, 608
Bst2UI CCWGG 2 cut(s) 259, 733
Bst4CI ACNGT 4 cut(s) 181, 1051, 1128, 1244
Bst6I CTCTTC 4 cut(s) 228, 317, 826, 1013
BstAUI TGTACA 2 cut(s) 336, 1011
BstDEI CTNAG 4 cut(s) 273, 705, 825, 839
BstDSI CCRYGG 1 cut(s) 478
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 4 cut(s) 122, 202, 474, 1085
BstFNI CGCG 1 cut(s) 480
BstH2I RGCGCY 2 cut(s) 307, 317
BstHHI GCGC 2 cut(s) 306, 316
BstKTI GATC 8 cut(s) 86, 252, 345, 603, 756, 838, 888, 1174
BstMAI GTCTC 2 cut(s) 526, 1104
BstMBI GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 96, 139, 477, 653
BstNI CCWGG 2 cut(s) 259, 733
BstNSI RCATGY 2 cut(s) 636, 898
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 257, 718, 731
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 4 cut(s) 108, 111, 151, 1151
BstV2I GAAGAC 3 cut(s) 878, 924, 1122
BstX2I RGATCY 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 835
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 4 cut(s) 245, 257, 360, 1143
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 4 cut(s) 122, 202, 474, 1085
BtsI GCAGTG 1 cut(s) 1199
BtsIMutI CAGTG 2 cut(s) 186, 1199
BveI ACCTGC 1 cut(s) 1235
CfoI GCGC 2 cut(s) 306, 316
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 2 cut(s) 590, 1142
Cfr42I CCGCGG 1 cut(s) 481
Csp6I GTAC 3 cut(s) 171, 337, 1012
CviQI GTAC 3 cut(s) 171, 337, 1012
DdeI CTNAG 4 cut(s) 273, 705, 825, 839
DpnI GATC 8 cut(s) 85, 251, 344, 602, 755, 837, 887, 1173
DpnII GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 4 cut(s) 228, 317, 826, 1013
EarI CTCTTC 4 cut(s) 228, 317, 826, 1013
Ecl136II GAGCTC 3 cut(s) 133, 973, 1003
Eco130I CCWWGG 2 cut(s) 126, 608
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 3 cut(s) 135, 975, 1005
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 590
Eco47III AGCGCT 1 cut(s) 305
Eco53kI GAGCTC 3 cut(s) 133, 973, 1003
Eco57I CTGAAG 2 cut(s) 936, 1116
Eco81I CCTNAGG 1 cut(s) 825
Eco91I GGTNACC 1 cut(s) 47
EcoICRI GAGCTC 3 cut(s) 133, 973, 1003
EcoO109I RGGNCCY 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 257, 731
EcoRV GATATC 1 cut(s) 862
EcoT14I CCWWGG 2 cut(s) 126, 608
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 3 cut(s) 135, 975, 1005
ErhI CCWWGG 2 cut(s) 126, 608
FalI AAGNNNNNCTT 6 cut(s) 275, 307, 293, 325, 577, 609
FaqI GGGAC 3 cut(s) 370, 520, 736
FauI CCCGC 2 cut(s) 466, 951
FauNDI CATATG 1 cut(s) 649
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 6 cut(s) 97, 100, 140, 394, 1165, 1257
FokI GGATG 4 cut(s) 109, 209, 461, 1092
FriOI GRGCYC 3 cut(s) 135, 975, 1005
Fsp4HI GCNGC 6 cut(s) 97, 100, 140, 394, 1165, 1257
FspBI CTAG 4 cut(s) 390, 518, 545, 1076
GlaI GCGC 2 cut(s) 305, 315
GluI GCNGC 6 cut(s) 97, 100, 140, 394, 1165, 1257
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 2 cut(s) 307, 317
HaeIII GGCC 4 cut(s) 245, 257, 360, 1143
HapII CCGG 4 cut(s) 657, 719, 777, 1055
HhaI GCGC 2 cut(s) 306, 316
Hin6I GCGC 2 cut(s) 304, 314
HinP1I GCGC 2 cut(s) 304, 314
HincII GTYRAC 1 cut(s) 1240
HindII GTYRAC 1 cut(s) 1240
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 5 cut(s) 111, 212, 491, 508, 698
HpaII CCGG 4 cut(s) 657, 719, 777, 1055
HphI GGTGA 3 cut(s) 307, 494, 1069
Hpy166II GTNNAC 5 cut(s) 298, 353, 964, 1012, 1240
Hpy188I TCNGA 3 cut(s) 267, 274, 758
Hpy188III TCNNGA 5 cut(s) 65, 346, 585, 985, 1205
Hpy8I GTNNAC 5 cut(s) 298, 353, 964, 1012, 1240
HpyAV CCTTC 4 cut(s) 187, 603, 759, 1155
HpyCH4III ACNGT 4 cut(s) 181, 1051, 1128, 1244
HpyCH4V TGCA 7 cut(s) 139, 200, 438, 503, 647, 848, 1192
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 139, 477, 653
HpyF3I CTNAG 4 cut(s) 273, 705, 825, 839
HspAI GCGC 2 cut(s) 304, 314
Ksp22I TGATCA 1 cut(s) 600
KspI CCGCGG 1 cut(s) 481
Kzo9I GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
LmnI GCTCC 4 cut(s) 130, 450, 736, 779
Lsp1109I GCAGC 4 cut(s) 108, 111, 151, 1151
LweI GCATC 1 cut(s) 187
MaeI CTAG 4 cut(s) 390, 518, 545, 1076
MaeIII GTNAC 3 cut(s) 47, 209, 782
MalI GATC 8 cut(s) 85, 251, 344, 602, 755, 837, 887, 1173
MboI GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 3 cut(s) 135, 975, 1005
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 413
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 206, 502
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 1078
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 4 cut(s) 657, 719, 777, 1055
MspR9I CCNGG 3 cut(s) 259, 720, 733
MvaI CCWGG 2 cut(s) 259, 733
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 4 cut(s) 96, 139, 477, 653
NciI CCSGG 1 cut(s) 720
NdeI CATATG 1 cut(s) 649
NdeII GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
NlaIV GGNNCC 3 cut(s) 264, 640, 738
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 2 cut(s) 636, 898
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 2 cut(s) 632, 894
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 3 cut(s) 111, 491, 698
PkrI GCNGC 6 cut(s) 98, 101, 141, 395, 1166, 1258
PleI GAGTC 2 cut(s) 206, 502
PpsI GAGTC 2 cut(s) 206, 502
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 2 cut(s) 632, 894
Psp124BI GAGCTC 3 cut(s) 135, 975, 1005
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 2 cut(s) 257, 731
PspEI GGTNACC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 257, 731
PspN4I GGNNCC 3 cut(s) 264, 640, 738
PspPI GGNCC 2 cut(s) 590, 1142
PspPPI RGGWCCY 1 cut(s) 590
PsrI GAACNNNNNNTAC 2 cut(s) 269, 301
PsuI RGATCY 1 cut(s) 835
RsaI GTAC 3 cut(s) 172, 338, 1013
RsaNI GTAC 3 cut(s) 171, 337, 1012
RseI CAYNNNNRTG 1 cut(s) 1078
SacI GAGCTC 3 cut(s) 135, 975, 1005
SacII CCGCGG 1 cut(s) 481
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 6 cut(s) 97, 100, 140, 394, 1165, 1257
Sau3AI GATC 8 cut(s) 83, 249, 342, 600, 753, 835, 885, 1171
Sau96I GGNCC 2 cut(s) 590, 1142
SchI GAGTC 2 cut(s) 206, 502
ScrFI CCNGG 3 cut(s) 259, 720, 733
SduI GDGCHC 3 cut(s) 135, 975, 1005
SfaNI GCATC 1 cut(s) 187
Sfr303I CCGCGG 1 cut(s) 481
SgrBI CCGCGG 1 cut(s) 481
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 1078
SmlI CTYRAG 2 cut(s) 983, 1004
SmoI CTYRAG 2 cut(s) 983, 1004
SpeI ACTAGT 1 cut(s) 517
Sse9I AATT 1 cut(s) 413
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 6 cut(s) 393, 459, 478, 480, 944, 956
SspMI CTAG 4 cut(s) 390, 518, 545, 1076
SstI GAGCTC 3 cut(s) 135, 975, 1005
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 257, 718, 731
StyI CCWWGG 2 cut(s) 126, 608
TaaI ACNGT 4 cut(s) 181, 1051, 1128, 1244
TaqI TCGA 2 cut(s) 417, 864
TasI AATT 1 cut(s) 413
TatI WGTACW 2 cut(s) 336, 1011
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 3 cut(s) 111, 491, 698
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 2 cut(s) 186, 1199
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 5 cut(s) 96, 99, 139, 1164, 1256
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 111, 463, 1031, 1222
TspRI CASTG 2 cut(s) 186, 1199
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 413
XceI RCATGY 2 cut(s) 636, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 4 cut(s) 390, 518, 545, 1076
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.