Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005792

Physical Location & Seq

Genomic Coordinates Reverse (-)

70723445 .. 70723848

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0584300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGCAGTGCCGGCTTCGCCGCGTTGTCCAGGTTTGCTGGCTGTCGGACGGGTGCTTTATTGCCCGGGGTTTTGGTCTGCAGAGAAGGGATCCGGCAAGGGGCTCGAGCGTCTGGGCGCGCTCATGGTGGACTTCCATATCCAGCGGTGCTACCACGAGTGGGTGGAGGGATGGAGAGGGGCGGTGTTTGGACAGGTTTCCTCTCGGGTCTAGATCCCCGATCTGGATCCAGGCTGCATAGGGATGGGATCGTGGAGTTGGAGGGTGTCCTCCTGTGGTGGTCCGACGGCGATGTCAGAGCGGCGGTGGTGGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

106

Amino Acids

10.99

Weight (kDa)

9.65

Isoelectric Point (pI)

23.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27150 AT3G27150 AT5G40680
fragaria_vesca	FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292
malus_domestica	MD09G1011800.v1.1 MD09G1011900.v1.1 MD17G1012500.v1.1
prunus_persica	Prupe.3G305200_v2.0.a1 Prupe.3G305200_v2.0.a1
pyrus_communis	pycom111g01010 pycom111g01020 pycom17g01000
rosa_chinensis	RchiOBHm_Chr2g0175451
rosa_laevigata	RLG00000022328
rosa_multiflora	Rmu_sc0003512.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077320
rosa_rugosa	Rorug02G0584300 Rorug02G0584400 Rorug02G0584500
rosa_samantha	Rh2AG664300 Rh2BG675000 Rh2CG638300 Rh2DG689000
rosa_wichuraiana	Rw2G054440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	302
AccII	CGCG	2 cut(s)	23, 120
AciI	CCGC	5 cut(s)	21, 146, 183, 302, 305
AclWI	GGATC	6 cut(s)	85, 98, 209, 222, 235, 257
AfiI	CCNNNNNNNGG	3 cut(s)	100, 161, 224
AjnI	CCWGG	2 cut(s)	29, 230
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	6 cut(s)	85, 98, 209, 222, 235, 257
Ama87I	CYCGRG	3 cut(s)	65, 105, 205
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	120, 122
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	2 cut(s)	66, 67
AvaI	CYCGRG	3 cut(s)	65, 105, 205
AvaII	GGWCC	1 cut(s)	282
BamHI	GGATCC	2 cut(s)	90, 227
BanII	GRGCYC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	166, 239
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	31, 232
BcnI	CCSGG	2 cut(s)	66, 67
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	3 cut(s)	21, 236, 303
BlsI	GCNGC	3 cut(s)	22, 237, 304
Bme1390I	CCNGG	4 cut(s)	31, 66, 67, 232
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	3 cut(s)	65, 105, 205
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	2 cut(s)	92, 229
BmrFI	CCNGG	4 cut(s)	31, 66, 67, 232
BpuMI	CCSGG	2 cut(s)	66, 67
BsaBI	GATNNNNATC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	65, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 161, 224
Bse118I	RCCGGY	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	31, 232
BseDI	CCNNGG	2 cut(s)	65, 66
BseGI	GGATG	2 cut(s)	177, 250
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	100, 161, 224
BsePI	GCGCGC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	23, 120
BsiHKCI	CYCGRG	3 cut(s)	65, 105, 205
BsiSI	CCGG	3 cut(s)	12, 66, 94
BslI	CCNNNNNNNGG	3 cut(s)	100, 161, 224
BsmAI	GTCTC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	3 cut(s)	65, 105, 205
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	5 cut(s)	90, 214, 221, 227, 249
BspACI	CCGC	5 cut(s)	21, 146, 183, 302, 305
BspFNI	CGCG	2 cut(s)	23, 120
BspLI	GGNNCC	2 cut(s)	92, 229
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	6 cut(s)	85, 98, 209, 222, 235, 257
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	65, 66
BssHII	GCGCGC	1 cut(s)	118
BssMI	GATC	5 cut(s)	90, 214, 221, 227, 249
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	31, 232
BstC8I	GCNNGC	3 cut(s)	13, 40, 120
BstF5I	GGATG	2 cut(s)	177, 250
BstFNI	CGCG	2 cut(s)	23, 120
BstHHI	GCGC	2 cut(s)	120, 122
BstKTI	GATC	5 cut(s)	93, 217, 224, 230, 252
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	5 cut(s)	90, 214, 221, 227, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 17
BstNI	CCWGG	2 cut(s)	31, 232
BstSCI	CCNGG	4 cut(s)	29, 64, 65, 230
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	2 cut(s)	23, 120
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	90, 214, 227
BstYI	RGATCY	3 cut(s)	90, 214, 227
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	177, 250
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	13, 40, 120
CfoI	GCGC	2 cut(s)	120, 122
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	282
Cfr9I	CCCGGG	1 cut(s)	65
CseI	GACGC	1 cut(s)	99
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	4 cut(s)	15, 42, 104, 235
CviKI_1	RGCY	4 cut(s)	15, 42, 104, 235
DpnI	GATC	5 cut(s)	92, 216, 223, 229, 251
DpnII	GATC	5 cut(s)	90, 214, 221, 227, 249
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	282
Eco88I	CYCGRG	3 cut(s)	65, 105, 205
EcoRII	CCWGG	2 cut(s)	29, 230
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	1 cut(s)	128
FaiI	YATR	3 cut(s)	126, 139, 240
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	21, 236, 303
FokI	GGATG	2 cut(s)	184, 257
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	21, 236, 303
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	119, 121
GluI	GCNGC	3 cut(s)	21, 236, 303
HapII	CCGG	3 cut(s)	12, 66, 94
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	2 cut(s)	120, 122
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	2 cut(s)	118, 120
HinP1I	GCGC	2 cut(s)	118, 120
HpaII	CCGG	3 cut(s)	12, 66, 94
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	48, 286, 299
Hpy188III	TCNNGA	2 cut(s)	212, 225
Hpy8I	GTNNAC	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	81, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 17
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	2 cut(s)	118, 120
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	90, 214, 221, 227, 249
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	212
MalI	GATC	5 cut(s)	92, 216, 223, 229, 251
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	5 cut(s)	90, 214, 221, 227, 249
MflI	RGATCY	3 cut(s)	90, 214, 227
MhlI	GDGCHC	1 cut(s)	106
MmeI	TCCRAC	3 cut(s)	26, 240, 309
MnlI	CCTC	5 cut(s)	161, 171, 212, 256, 281
MroNI	GCCGGC	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	3 cut(s)	12, 66, 94
MspR9I	CCNGG	4 cut(s)	31, 66, 67, 232
MvaI	CCWGG	2 cut(s)	31, 232
MvnI	CGCG	2 cut(s)	23, 120
MwoI	GCNNNNNNNGC	2 cut(s)	12, 17
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	66, 67
NdeII	GATC	5 cut(s)	90, 214, 221, 227, 249
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	92, 229
PaeR7I	CTCGAG	1 cut(s)	105
PauI	GCGCGC	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	22, 237, 304
Psp6I	CCWGG	2 cut(s)	29, 230
PspGI	CCWGG	2 cut(s)	29, 230
PspN4I	GGNNCC	2 cut(s)	92, 229
PspPI	GGNCC	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	90, 214, 227
PteI	GCGCGC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	3 cut(s)	21, 236, 303
Sau3AI	GATC	5 cut(s)	90, 214, 221, 227, 249
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	4 cut(s)	31, 66, 67, 232
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	3 cut(s)	35, 199, 320
SfcI	CTRYAG	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	105
SmaI	CCCGGG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
SsiI	CCGC	5 cut(s)	21, 146, 183, 302, 305
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	4 cut(s)	29, 64, 65, 230
TaqI	TCGA	1 cut(s)	106
TauI	GCSGC	2 cut(s)	23, 305
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	235
TspMI	CCCGGG	1 cut(s)	65
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	282
XbaI	TCTAGA	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	105
XmaI	CCCGGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.