MD09G1011800.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
768762 .. 770096
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1011800.v1.1.491

Sequence Viewer

Length: 1314 bp
ATGTCCAGAGAAAAAGAAATGGTGGGTACTGCAGAAGAAGGAGGAGGAGGAGGAGAAGAAAGCAGGGAGTTGTTTAGAGATGAATGCAATAATAATGTTCTCAGTTGTAAGAAATTGGGGTTTGCTAGTAATGCCGGAGAAAAGGCTGGAAATCAAAGCCTGAGCTGCCGTGGATTTCAATATTCGCGGCAGCTTAGGCTCGAAGTTGATGGTTCTGGTTCCTTAGGAACTATGCCACGTAAACCGCAGGATGCAGACTATACAATTCCTCCCCTCACTGATGAGGTGGAGGCTTTGATCTTAGCCAGGGTGCCGAGATCAGAGTACCCGAAGTTTTGTACCATAAACAAGCGATTTTACGTGCTGTTGAAGAGTGGTGAGCTATACAAGATCAGGGCCAAACTTGGGATAAAGGAGCCCTCTGTGTTTGTGTCGCAACACGGGGAGAATACATGGTGGGAATGCTACAGGCAGTCCAGGTTTTGCAGGAAGCTCCCAATCCTACCTTCGGATTCGTGCTTCGCGTCAAGCGACAGGGAGTCCCTTTGTGCAGGGACTCATCTCCTGGTGTCCGGCAGAGAGATAGAGGGTGTTGTTGTTTGGAGGTATGACATGGAAGCAAACCAATGGGGCAAGGGTCCTAGCATGATCAGTCCGAGGTGTATGTTTGCTTCTGCAACATGTGGTTCCTACGCATATGTGGCCGGCGGGATGGGACTGGCAAGTGAGTGGAAAGCCATGGATTCTGCTGAGAGATACGATCCTGGGACTAAATCATGGGAGCCCCTTCCGAATATGAAGCAAGAGAGGAGGGGCTGCTCCAGCTGTTTCTTGGACAACAAGTTTTATGTAATTGGAGGGCAAGATCGTCATGGAAGCGATCTATTCTGTGCTGAAGCCTTTGATATTGAGAAACACACATGGGAACTCATCCCGGACATGCTAGAAGCTGACTGGACAACTGTAAGCAACCCGTCTCCGCCTCTTATTGCGGTGGTGGCCAACCAGCTCTACTCTCTTAAAACTTCCACAAATGAGCTCAAGGTGTATTTGAAGCAAAGCAAGGCATGGAAGAAGTTGGGAGTCGTTCCGGTAAGAGCTGATGCTACTTCCGGATGGGGTATAGGGTTTAAGTCGCTCGGTGACGAGCTACTTGTCGGCCAATCTTCATCAGATGGAAATGCAGGAGGCCCTGCCCTCGAGTACACTTGCTGCCCTGATCCAACCGCTGATGATTTGCAGTGGCAAGCTATTGAGCAGGGCCACAGCCACACTACCCGCTTCATCATTAATTGTTCCGTCATGGCTGCTTGA

Protein Analysis

438

Amino Acids

48.29

Weight (kDa)

5.72

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 185 - 370 5e-11 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 199 - 271 1.7e-07 FKB95, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 200 - 312 3.2e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 200 - 309 1.2e-06 FBX42, beta-propeller domain
Kelch_1 PF01344 219 - 267 1.8e-10 Kelch motif
Kelch_FKB95 PF25210 260 - 313 4.2e-10 FKB95, Kelch-repeats domain
Kelch_1 PF01344 270 - 314 5.9e-13 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AccII CGCG 2 cut(s) 187, 524
AccIII TCCGGA 1 cut(s) 1112
AciI CCGC 7 cut(s) 187, 245, 708, 980, 992, 1227, 1279
AclWI GGATC 2 cut(s) 755, 1214
AcoI YGGCCR 3 cut(s) 702, 999, 1159
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 4 cut(s) 28, 326, 340, 1205
AfiI CCNNNNNNNGG 2 cut(s) 405, 508
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 3 cut(s) 179, 370, 1054
AhdI GACNNNNNGTC 1 cut(s) 538
AjnI CCWGG 4 cut(s) 305, 476, 564, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 1 cut(s) 981
AlwI GGATC 2 cut(s) 755, 1214
Ama87I CYCGRG 1 cut(s) 1199
Aor13HI TCCGGA 1 cut(s) 1112
AoxI GGCC 6 cut(s) 396, 702, 999, 1159, 1189, 1261
ApeKI GCWGC 5 cut(s) 165, 190, 816, 1212, 1307
AseI ATTAAT 1 cut(s) 1290
AspS9I GGNCC 4 cut(s) 396, 638, 1190, 1261
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 2 cut(s) 389, 1154
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 223
BalI TGGCCA 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 3 cut(s) 420, 786, 1041
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 5 cut(s) 152, 202, 803, 1199, 1294
BccI CCATC 4 cut(s) 203, 706, 1110, 1169
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 4 cut(s) 307, 478, 566, 765
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 1 cut(s) 981
BfaI CTAG 3 cut(s) 126, 642, 944
BfmI CTRYAG 2 cut(s) 30, 466
BisI GCNGC 6 cut(s) 166, 188, 191, 817, 1213, 1308
BlsI GCNGC 6 cut(s) 167, 189, 192, 818, 1214, 1309
Bme1390I CCNGG 5 cut(s) 307, 478, 566, 765, 935
Bme18I GGWCC 1 cut(s) 638
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 4 cut(s) 396, 638, 1190, 1261
BmiI GGNNCC 6 cut(s) 220, 312, 417, 639, 688, 783
BmrFI CCNGG 5 cut(s) 307, 478, 566, 765, 935
BmsI GCATC 2 cut(s) 241, 1093
BpmI CTGGAG 1 cut(s) 805
Bpu10I CCTNAGC 2 cut(s) 161, 194
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 935
BsaAI YACGTR 2 cut(s) 239, 361
BsaJI CCNNGG 5 cut(s) 169, 306, 656, 738, 764
BsaWI WCCGGW 2 cut(s) 1090, 1112
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 508
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 2 cut(s) 723, 959
Bse21I CCTNAGG 1 cut(s) 223
BseAI TCCGGA 1 cut(s) 1112
BseBI CCWGG 4 cut(s) 307, 478, 566, 765
BseDI CCNNGG 5 cut(s) 169, 306, 656, 738, 764
BseGI GGATG 4 cut(s) 256, 717, 930, 1121
BseLI CCNNNNNNNGG 2 cut(s) 405, 508
BseMII CTCAG 3 cut(s) 115, 152, 741
BseNI ACTGG 2 cut(s) 723, 959
BseRI GAGGAG 5 cut(s) 57, 60, 63, 66, 823
BseXI GCAGC 5 cut(s) 152, 202, 803, 1199, 1294
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 2 cut(s) 187, 524
BshFI GGCC 6 cut(s) 398, 704, 1001, 1161, 1191, 1263
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 1041
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 6 cut(s) 135, 573, 705, 935, 1091, 1113
BslFI GGGAC 4 cut(s) 526, 568, 729, 781
BslI CCNNNNNNNGG 2 cut(s) 405, 508
BsmAI GTCTC 1 cut(s) 981
BsmBI CGTCTC 1 cut(s) 981
BsmFI GGGAC 4 cut(s) 526, 568, 729, 781
BsmI GAATGC 2 cut(s) 89, 467
BsnI GGCC 6 cut(s) 398, 704, 1001, 1161, 1191, 1263
BsoBI CYCGRG 1 cut(s) 1199
Bsp1286I GDGCHC 3 cut(s) 420, 786, 1041
Bsp13I TCCGGA 1 cut(s) 1112
Bsp143I GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 7 cut(s) 187, 245, 708, 980, 992, 1227, 1279
BspANI GGCC 6 cut(s) 398, 704, 1001, 1161, 1191, 1263
BspCNI CTCAG 3 cut(s) 114, 153, 742
BspEI TCCGGA 1 cut(s) 1112
BspFNI CGCG 2 cut(s) 187, 524
BspLI GGNNCC 6 cut(s) 220, 312, 417, 639, 688, 783
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 2 cut(s) 755, 1214
BspT107I GGYRCC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 2 cut(s) 723, 959
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 5 cut(s) 169, 306, 656, 738, 764
BssMI GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 4 cut(s) 307, 478, 566, 765
Bst4CI ACNGT 1 cut(s) 964
Bst6I CTCTTC 1 cut(s) 365
BstBAI YACGTR 2 cut(s) 239, 361
BstC8I GCNNGC 2 cut(s) 706, 1248
BstDEI CTNAG 6 cut(s) 101, 161, 194, 223, 301, 750
BstDSI CCRYGG 2 cut(s) 169, 738
BstF5I GGATG 4 cut(s) 256, 717, 930, 1121
BstFNI CGCG 2 cut(s) 187, 524
BstKTI GATC 8 cut(s) 300, 320, 393, 651, 763, 868, 883, 1222
BstMAI GTCTC 1 cut(s) 981
BstMBI GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
BstMWI GCNNNNNNNGC 6 cut(s) 131, 165, 196, 701, 822, 998
BstNI CCWGG 4 cut(s) 307, 478, 566, 765
BstNSI RCATGY 2 cut(s) 684, 943
BstSCI CCNGG 5 cut(s) 305, 476, 564, 763, 933
BstSFI CTRYAG 2 cut(s) 30, 466
BstUI CGCG 2 cut(s) 187, 524
BstV1I GCAGC 5 cut(s) 152, 202, 803, 1199, 1294
Bsu36I CCTNAGG 1 cut(s) 223
BsuRI GGCC 6 cut(s) 398, 704, 1001, 1161, 1191, 1263
BtgI CCRYGG 2 cut(s) 169, 738
BtsCI GGATG 4 cut(s) 256, 717, 930, 1121
BtsI GCAGTG 1 cut(s) 1247
BtsIMutI CAGTG 2 cut(s) 276, 1247
Cac8I GCNNGC 2 cut(s) 706, 1248
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 4 cut(s) 396, 638, 1190, 1261
CseI GACGC 1 cut(s) 513
Csp6I GTAC 4 cut(s) 27, 325, 339, 1204
CviQI GTAC 4 cut(s) 27, 325, 339, 1204
DdeI CTNAG 6 cut(s) 101, 161, 194, 223, 301, 750
DpnI GATC 8 cut(s) 299, 319, 392, 650, 762, 867, 882, 1221
DpnII GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
DriI GACNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 3 cut(s) 702, 999, 1159
Eam1104I CTCTTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 1 cut(s) 969
Ecl136II GAGCTC 1 cut(s) 1039
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 3 cut(s) 420, 786, 1041
Eco47I GGWCC 1 cut(s) 638
Eco53kI GAGCTC 1 cut(s) 1039
Eco57I CTGAAG 1 cut(s) 915
Eco81I CCTNAGG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 1199
EcoICRI GAGCTC 1 cut(s) 1039
EcoO109I RGGNCCY 2 cut(s) 638, 1190
EcoRII CCWGG 4 cut(s) 305, 476, 564, 763
EcoT14I CCWWGG 1 cut(s) 738
EcoT38I GRGCYC 3 cut(s) 420, 786, 1041
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 981
FaqI GGGAC 4 cut(s) 526, 568, 729, 781
FauI CCCGC 2 cut(s) 701, 1286
FauNDI CATATG 1 cut(s) 697
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 6 cut(s) 166, 188, 191, 817, 1213, 1308
FokI GGATG 4 cut(s) 263, 724, 917, 1128
FriOI GRGCYC 3 cut(s) 420, 786, 1041
Fsp4HI GCNGC 6 cut(s) 166, 188, 191, 817, 1213, 1308
FspBI CTAG 3 cut(s) 126, 642, 944
GluI GCNGC 6 cut(s) 166, 188, 191, 817, 1213, 1308
GsuI CTGGAG 1 cut(s) 805
HaeIII GGCC 6 cut(s) 398, 704, 1001, 1161, 1191, 1263
HapII CCGG 6 cut(s) 135, 573, 705, 935, 1091, 1113
HgaI GACGC 1 cut(s) 513
HinfI GANTC 5 cut(s) 512, 539, 556, 743, 1083
HpaII CCGG 6 cut(s) 135, 573, 705, 935, 1091, 1113
HphI GGTGA 2 cut(s) 389, 1154
Hpy166II GTNNAC 2 cut(s) 242, 1206
Hpy188I TCNGA 5 cut(s) 322, 511, 657, 792, 1174
Hpy188III TCNNGA 2 cut(s) 6, 1113
Hpy8I GTNNAC 2 cut(s) 242, 1206
HpyAV CCTTC 3 cut(s) 32, 516, 797
HpyCH4III ACNGT 1 cut(s) 964
HpyCH4IV ACGT 2 cut(s) 238, 360
HpyCH4V TGCA 8 cut(s) 32, 87, 254, 486, 551, 677, 1184, 1240
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 165, 196, 701, 822, 998
HpyF3I CTNAG 6 cut(s) 101, 161, 194, 223, 301, 750
HpySE526I ACGT 2 cut(s) 238, 360
Kpn2I TCCGGA 1 cut(s) 1112
KroI GCCGGC 1 cut(s) 704
KroNI GCCGGC 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
LmnI GCTCC 4 cut(s) 415, 498, 781, 824
Lsp1109I GCAGC 5 cut(s) 152, 202, 803, 1199, 1294
LweI GCATC 2 cut(s) 241, 1093
MaeI CTAG 3 cut(s) 126, 642, 944
MaeII ACGT 2 cut(s) 238, 360
MaeIII GTNAC 1 cut(s) 1142
MalI GATC 8 cut(s) 299, 319, 392, 650, 762, 867, 882, 1221
MboI GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
MboII GAAGA 5 cut(s) 47, 68, 382, 1084, 1158
MhlI GDGCHC 3 cut(s) 420, 786, 1041
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 4 cut(s) 113, 264, 852, 1291
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 3 cut(s) 548, 550, 1092
MmeI TCCRAC 1 cut(s) 1247
Mox20I TGGCCA 1 cut(s) 1001
MroI TCCGGA 1 cut(s) 1112
MroNI GCCGGC 1 cut(s) 704
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 3 cut(s) 1020, 1131, 1290
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 2 cut(s) 825, 1229
MspI CCGG 6 cut(s) 135, 573, 705, 935, 1091, 1113
MspR9I CCNGG 5 cut(s) 307, 478, 566, 765, 935
Mva1269I GAATGC 2 cut(s) 89, 467
MvaI CCWGG 4 cut(s) 307, 478, 566, 765
MvnI CGCG 2 cut(s) 187, 524
MwoI GCNNNNNNNGC 6 cut(s) 131, 165, 196, 701, 822, 998
NaeI GCCGGC 1 cut(s) 706
NciI CCSGG 1 cut(s) 935
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 697
NdeII GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
NgoMIV GCCGGC 1 cut(s) 704
NlaIV GGNNCC 6 cut(s) 220, 312, 417, 639, 688, 783
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 1142
NspI RCATGY 2 cut(s) 684, 943
PaeR7I CTCGAG 1 cut(s) 1199
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 528
PctI GAATGC 2 cut(s) 89, 467
PdiI GCCGGC 1 cut(s) 706
PfeI GAWTC 2 cut(s) 512, 743
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 6 cut(s) 167, 189, 192, 818, 1214, 1309
PleI GAGTC 3 cut(s) 547, 550, 1091
PpsI GAGTC 3 cut(s) 547, 550, 1091
Ppu21I YACGTR 2 cut(s) 239, 361
PpuMI RGGWCCY 1 cut(s) 638
PscI ACATGT 1 cut(s) 680
PshBI ATTAAT 1 cut(s) 1290
Psp124BI GAGCTC 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 4 cut(s) 305, 476, 564, 763
PspGI CCWGG 4 cut(s) 305, 476, 564, 763
PspN4I GGNNCC 6 cut(s) 220, 312, 417, 639, 688, 783
PspPI GGNCC 4 cut(s) 396, 638, 1190, 1261
PspPPI RGGWCCY 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 1199
PstI CTGCAG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 825
RsaI GTAC 4 cut(s) 28, 326, 340, 1205
RsaNI GTAC 4 cut(s) 27, 325, 339, 1204
SacI GAGCTC 1 cut(s) 1041
SaqAI TTAA 3 cut(s) 1020, 1131, 1290
SatI GCNGC 6 cut(s) 166, 188, 191, 817, 1213, 1308
Sau3AI GATC 8 cut(s) 297, 317, 390, 648, 760, 865, 880, 1219
Sau96I GGNCC 4 cut(s) 396, 638, 1190, 1261
SchI GAGTC 3 cut(s) 548, 550, 1092
ScrFI CCNGG 5 cut(s) 307, 478, 566, 765, 935
SduI GDGCHC 3 cut(s) 420, 786, 1041
SfaNI GCATC 2 cut(s) 241, 1093
SfcI CTRYAG 2 cut(s) 30, 466
Sfr274I CTCGAG 1 cut(s) 1199
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 1199
SmlI CTYRAG 2 cut(s) 1040, 1199
SmoI CTYRAG 2 cut(s) 1040, 1199
Sse9I AATT 4 cut(s) 113, 264, 852, 1291
SsiI CCGC 7 cut(s) 187, 245, 708, 980, 992, 1227, 1279
SspI AATATT 1 cut(s) 182
SspMI CTAG 3 cut(s) 126, 642, 944
SstI GAGCTC 1 cut(s) 1041
StyD4I CCNGG 5 cut(s) 305, 476, 564, 763, 933
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 1 cut(s) 964
TaiI ACGT 2 cut(s) 241, 363
TaqI TCGA 2 cut(s) 201, 1200
TasI AATT 4 cut(s) 113, 264, 852, 1291
TatI WGTACW 1 cut(s) 1203
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 2 cut(s) 512, 743
Tru1I TTAA 3 cut(s) 1020, 1131, 1290
Tru9I TTAA 3 cut(s) 1020, 1131, 1290
TscAI CASTG 2 cut(s) 283, 1247
TseFI GTSAC 1 cut(s) 1142
TseI GCWGC 5 cut(s) 165, 190, 816, 1212, 1307
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 4 cut(s) 96, 812, 1158, 1273
TspGWI ACGGA 1 cut(s) 1288
TspRI CASTG 2 cut(s) 283, 1247
VpaK11BI GGWCC 1 cut(s) 638
VspI ATTAAT 1 cut(s) 1290
XceI RCATGY 2 cut(s) 684, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 1199
XspI CTAG 3 cut(s) 126, 642, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.