Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005792

Physical Location & Seq

Genomic Coordinates Reverse (-)

649395 .. 650709

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCCAGAGAAAAAGAAATGGAGGGTACTGCAGCAGAAGGAGGAGGAGGAGAAGAAAGCAGGGGGTTGTGTAGAGATGAATGCAATAATAATGTTCTCAGTTGTAAGAAATGGGTGTTTGCTAGTAATAATGCCGGAGAAAAGCTTGGAAATCAAAGCCTGAGCCGCCGTGAATTTAAATATCCACAACAACTTGGGCTTGAAGTTGATGGTTCCGGTTCCTTAGGAACTGTGCCACGTAAACCGCAGGATGCAGATTATACAATTCCTCCCCTCATTGATGAGGTGGAGGCTTTGATCTTAGCCACGGTGCCGAGATCAGAGGTGTTGTTGTTTGGAGGTATGACATGGAAGCAAACCAATGGGGCAAGGGTCCTAGCATCGATCAGTCCAAGGTGTATGTTTGCTTCTGCAACATGTGGTTCCTACGCATATGTGGCCGGCGGGATGGGATTGGCAAGTGATTGGAAAGCCATGGATTCTGCTGAGAGATACAATCCTGGGACTAAATCATGGGAGCCCCTTCCAAACATGGAGCGAGAGAGGAAGAGCTGCTCCGGCTGTTTCTTGGACAACAAGTTTTATGTGATTGGAGGGAAAGATCGGCATGGAAGCGATCTATTCTGTGCAGAAGCCTTTGATATCGAGAAACACACATGGGAACTCATCCCGGACATGCTAGAAGCTGACTGGACAACTCTAAGCAACCCATCTCCGCCACTTATTGCGGTGGTGGCCAACCGGCTCTACTCTCTGGAAACTTCGACAAATGAGCTCAAGGTGTATTTGAAGCAAAGCAAGGCATGGAAGAAGTTGGGAGTCGTTCCAGTAAGAGCTGACGCTACTTCCGGATGGGGTGTAGCCTTTAAGTCGCTCAGGGACGAGCTACTTGTCATCCAATCATCATTATATGCATATGCAGGAGGCCCTGCCCTCATATACACTTGCCGCCCTGATCCAACTGCTGATGAATTGCAGTGGCAAGCTCTTGAGTACGGCCACAGCCGCCCTACCCGCTTCATAGTTAATTGTTCCGTCATGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

350

Amino Acids

38.34

Weight (kDa)

5.49

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27150 AT3G27150 AT5G40680
fragaria_vesca	FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292
malus_domestica	MD09G1011800.v1.1 MD09G1011900.v1.1 MD17G1012500.v1.1
prunus_persica	Prupe.3G305200_v2.0.a1 Prupe.3G305200_v2.0.a1
pyrus_communis	pycom111g01010 pycom111g01020 pycom17g01000
rosa_chinensis	RchiOBHm_Chr2g0175451
rosa_laevigata	RLG00000022328
rosa_multiflora	Rmu_sc0003512.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077320
rosa_rugosa	Rorug02G0584300 Rorug02G0584400 Rorug02G0584500
rosa_samantha	Rh2AG664300 Rh2BG675000 Rh2CG638300 Rh2DG689000
rosa_wichuraiana	Rw2G054440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	848
AciI	CCGC	8 cut(s)	166, 245, 444, 716, 728, 949, 1006, 1015
AclWI	GGATC	1 cut(s)	950
AcoI	YGGCCR	3 cut(s)	438, 735, 997
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	2 cut(s)	28, 995
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	203, 790
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	7 cut(s)	145, 552, 686, 775, 836, 886, 986
AluI	AGCT	7 cut(s)	145, 552, 686, 775, 836, 886, 986
Alw21I	GWGCWC	1 cut(s)	777
AlwI	GGATC	1 cut(s)	950
Aor13HI	TCCGGA	1 cut(s)	848
AoxI	GGCC	4 cut(s)	438, 735, 925, 997
ApeKI	GCWGC	3 cut(s)	32, 552, 1043
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	373, 926
AsuC2I	CCSGG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	522, 777
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	3 cut(s)	44, 539, 1030
BccI	CCATC	4 cut(s)	203, 442, 718, 846
BceAI	ACGGC	2 cut(s)	153, 1012
BciT130I	CCWGG	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	671
BfaI	CTAG	3 cut(s)	123, 377, 680
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	6 cut(s)	33, 166, 553, 949, 1006, 1044
BlsI	GCNGC	6 cut(s)	34, 167, 554, 950, 1007, 1045
Bme1390I	CCNGG	2 cut(s)	501, 671
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	373, 926
BmiI	GGNNCC	6 cut(s)	214, 220, 312, 374, 424, 519
BmrFI	CCNGG	2 cut(s)	501, 671
BmsI	GCATC	2 cut(s)	241, 389
Bpu10I	CCTNAGC	2 cut(s)	161, 875
BpuEI	CTTGAG	2 cut(s)	761, 1010
BpuMI	CCSGG	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	306, 392, 474, 500
BsaWI	WCCGGW	2 cut(s)	215, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bse118I	RCCGGY	2 cut(s)	440, 741
Bse1I	ACTGG	2 cut(s)	695, 827
Bse21I	CCTNAGG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	848
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	4 cut(s)	306, 392, 474, 500
BseGI	GGATG	5 cut(s)	256, 453, 666, 857, 894
BseMII	CTCAG	4 cut(s)	112, 152, 477, 889
BseNI	ACTGG	2 cut(s)	695, 827
BseRI	GAGGAG	3 cut(s)	57, 60, 63
BseXI	GCAGC	3 cut(s)	44, 539, 1030
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	4 cut(s)	440, 737, 927, 999
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	7 cut(s)	135, 216, 441, 558, 671, 742, 849
BslFI	GGGAC	2 cut(s)	517, 893
BsmFI	GGGAC	2 cut(s)	517, 893
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	440, 737, 927, 999
Bsp1286I	GDGCHC	2 cut(s)	522, 777
Bsp13I	TCCGGA	1 cut(s)	848
Bsp143I	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	8 cut(s)	166, 245, 444, 716, 728, 949, 1006, 1015
BspANI	GGCC	4 cut(s)	440, 737, 927, 999
BspCNI	CTCAG	4 cut(s)	111, 153, 478, 888
BspDI	ATCGAT	1 cut(s)	383
BspEI	TCCGGA	1 cut(s)	848
BspLI	GGNNCC	6 cut(s)	214, 220, 312, 374, 424, 519
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	950
BspQI	GCTCTTC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	310
BsrFI	RCCGGY	2 cut(s)	440, 741
BsrI	ACTGG	2 cut(s)	695, 827
BssAI	RCCGGY	2 cut(s)	440, 741
BssECI	CCNNGG	4 cut(s)	306, 392, 474, 500
BssMI	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
BssT1I	CCWWGG	2 cut(s)	392, 474
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	232, 310
Bst6I	CTCTTC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	442, 984
BstDEI	CTNAG	7 cut(s)	98, 161, 223, 301, 486, 701, 875
BstDSI	CCRYGG	2 cut(s)	306, 474
BstF5I	GGATG	5 cut(s)	256, 453, 666, 857, 894
BstKTI	GATC	6 cut(s)	300, 320, 387, 604, 619, 958
BstMBI	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 437, 558, 734, 1005, 1014
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	2 cut(s)	420, 679
BstSCI	CCNGG	2 cut(s)	499, 669
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	44, 539, 1030
Bsu15I	ATCGAT	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	223
BsuRI	GGCC	4 cut(s)	440, 737, 927, 999
BsuTUI	ATCGAT	1 cut(s)	383
BtgI	CCRYGG	2 cut(s)	306, 474
BtsCI	GGATG	5 cut(s)	256, 453, 666, 857, 894
BtsI	GCAGTG	1 cut(s)	983
BtsIMutI	CAGTG	1 cut(s)	983
Cac8I	GCNNGC	2 cut(s)	442, 984
Cfr10I	RCCGGY	2 cut(s)	440, 741
Cfr13I	GGNCC	2 cut(s)	373, 926
ClaI	ATCGAT	1 cut(s)	383
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	27, 994
CviQI	GTAC	2 cut(s)	27, 994
DdeI	CTNAG	7 cut(s)	98, 161, 223, 301, 486, 701, 875
DpnI	GATC	6 cut(s)	299, 319, 386, 603, 618, 957
DpnII	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	3 cut(s)	438, 735, 997
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	775
Eco130I	CCWWGG	2 cut(s)	392, 474
Eco24I	GRGCYC	2 cut(s)	522, 777
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	775
Eco81I	CCTNAGG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	2 cut(s)	373, 926
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	392, 474
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	2 cut(s)	522, 777
ErhI	CCWWGG	2 cut(s)	392, 474
FaqI	GGGAC	2 cut(s)	517, 893
FauI	CCCGC	2 cut(s)	437, 1022
FauNDI	CATATG	2 cut(s)	433, 916
Fnu4HI	GCNGC	6 cut(s)	33, 166, 553, 949, 1006, 1044
FokI	GGATG	5 cut(s)	263, 460, 653, 864, 881
FriOI	GRGCYC	2 cut(s)	522, 777
Fsp4HI	GCNGC	6 cut(s)	33, 166, 553, 949, 1006, 1044
FspBI	CTAG	3 cut(s)	123, 377, 680
GluI	GCNGC	6 cut(s)	33, 166, 553, 949, 1006, 1044
HaeIII	GGCC	4 cut(s)	440, 737, 927, 999
HapII	CCGG	7 cut(s)	135, 216, 441, 558, 671, 742, 849
HgaI	GACGC	1 cut(s)	848
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	479, 819
HpaII	CCGG	7 cut(s)	135, 216, 441, 558, 671, 742, 849
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	5 cut(s)	6, 646, 755, 849, 989
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	32, 533
HpyCH4III	ACNGT	2 cut(s)	232, 310
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	8 cut(s)	32, 84, 254, 413, 629, 914, 920, 976
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 437, 558, 734, 1005, 1014
HpyF3I	CTNAG	7 cut(s)	98, 161, 223, 301, 486, 701, 875
HpySE526I	ACGT	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	848
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Kzo9I	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
LguI	GCTCTTC	1 cut(s)	542
LmnI	GCTCC	3 cut(s)	517, 535, 560
Lsp1109I	GCAGC	3 cut(s)	44, 539, 1030
LweI	GCATC	2 cut(s)	241, 389
MaeI	CTAG	3 cut(s)	123, 377, 680
MaeII	ACGT	1 cut(s)	238
MalI	GATC	6 cut(s)	299, 319, 386, 603, 618, 957
MboI	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
MboII	GAAGA	3 cut(s)	65, 559, 820
MhlI	GDGCHC	2 cut(s)	522, 777
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	4 cut(s)	173, 264, 971, 1027
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	983
Mox20I	TGGCCA	1 cut(s)	737
Mph1103I	ATGCAT	1 cut(s)	916
MroI	TCCGGA	1 cut(s)	848
MroNI	GCCGGC	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	3 cut(s)	177, 867, 1026
Msp20I	TGGCCA	1 cut(s)	737
MspI	CCGG	7 cut(s)	135, 216, 441, 558, 671, 742, 849
MspR9I	CCNGG	2 cut(s)	501, 671
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	6 cut(s)	165, 437, 558, 734, 1005, 1014
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	2 cut(s)	433, 916
NdeII	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
NgoMIV	GCCGGC	1 cut(s)	440
NlaIV	GGNNCC	6 cut(s)	214, 220, 312, 374, 424, 519
NmeAIII	GCCGAG	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	2 cut(s)	420, 679
PciI	ACATGT	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	542
PctI	GAATGC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	6 cut(s)	34, 167, 554, 950, 1007, 1045
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
Ppu21I	YACGTR	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	6 cut(s)	214, 220, 312, 374, 424, 519
PspPI	GGNCC	2 cut(s)	373, 926
PspPPI	RGGWCCY	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	28, 995
RsaNI	GTAC	2 cut(s)	27, 994
SacI	GAGCTC	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	177, 867, 1026
SatI	GCNGC	6 cut(s)	33, 166, 553, 949, 1006, 1044
Sau3AI	GATC	6 cut(s)	297, 317, 384, 601, 616, 955
Sau96I	GGNCC	2 cut(s)	373, 926
SchI	GAGTC	1 cut(s)	828
ScrFI	CCNGG	2 cut(s)	501, 671
SduI	GDGCHC	2 cut(s)	522, 777
SfaNI	GCATC	2 cut(s)	241, 389
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	373
SmiI	ATTTAAAT	1 cut(s)	178
SmlI	CTYRAG	2 cut(s)	776, 989
SmoI	CTYRAG	2 cut(s)	776, 989
Sse9I	AATT	4 cut(s)	173, 264, 971, 1027
SsiI	CCGC	8 cut(s)	166, 245, 444, 716, 728, 949, 1006, 1015
SspMI	CTAG	3 cut(s)	123, 377, 680
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	499, 669
StyI	CCWWGG	2 cut(s)	392, 474
SwaI	ATTTAAAT	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	232, 310
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	383, 645, 764
TasI	AATT	4 cut(s)	173, 264, 971, 1027
TauI	GCSGC	3 cut(s)	168, 951, 1008
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	177, 867, 1026
Tru9I	TTAA	3 cut(s)	177, 867, 1026
TscAI	CASTG	1 cut(s)	983
TseI	GCWGC	3 cut(s)	32, 552, 1043
TspDTI	ATGAA	3 cut(s)	93, 984, 1009
TspGWI	ACGGA	1 cut(s)	1024
TspRI	CASTG	1 cut(s)	983
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	2 cut(s)	420, 679
XspI	CTAG	3 cut(s)	123, 377, 680
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.