MD17G1012500.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1102994 .. 1105103
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1012500.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGGAGGGTGCTGAAGAAGATGAAAGCAGGAAGTTATTTAGGGATGAATGTAATAATAATCTTAGTAAGAAGTGGGTGTTTGCTAGTAAGGCTGGAGAAAAGGTTGGAAATCGAGGCCTGAGCCGCCGTGGATTTAAATATTCACGGCAGCTCAGGCTCGAAGTTGATGGTTCTGGTTCCTTAGGGACTGTGCCATGTAAACCGCAGGATGCAGATTATACAATTCATCCCCTCATTGACGAGGTGGAGGCTTTGATTTTAGCCAGGGTGCCGAGATCAGAGTACCGGAAGTTTTGTACCATAAACAAGCGCTTTTTCGCACTGTTGAAGAGTGGCGAGCTCTACAAGATCAGGGCCGAACTTGGGATCAAAGAGCCCTCTGTGTTTGTGTCGCAATACGGTGAGAATACATGGCGGGAATTTGACAGGCAGTTCAGGTTTTGCAGGAAGCTCCCAATCCTACCGTCTGATTCGTGCTTCATGTCAAGCGATAGGGAGTCTCTTTGCGCTGGGACTCATCTGCTGGTATCCGGCAGGGAGATAGAGGGTGTGGTTGTTTGGAGGTATGACATGGAAGCAAACCAATGGGGCAAGGGTCCCGGCATGATCAGTCCAAGGTGTATGTTTGCTTCCGCAACATGTGGTTCCTACGGATATGTGGCCGGCGGGATGGGATTAGCAAGTGATTGGAAAGCCATGGATTCTGCTGAGAGATTCAATCCCAGGACGAAATCATGGGAGCCTCTTCCGAATATGAAGCAAGAAAGGATGAGTTGCTCCGGATGTTTCTTGGACAACAAGTTTTATGTGATTGGAGGGAAAGATTGGCATGGAAGAGATCTTTTCTGTGCTGAAGCCTTTGATGTTGAGAAACACACATGGGAACTCATCCCGGACATGCTAGAAGCTGACTGGACAACTCTAAGCAACCCATCTCCGCCACTTATTGCAGTGGTGGCCAACCAGCTGTACTCTCTTGAAACTTCCACAAATGAGCTCAAGGTGTATCTGAAACAAAGCAAGGCATGGAAGAAATTGGGAGTTGTTCCGGTGAGAGCTGATGCTACTTCCGGATGGGGCGTGGCGTTTAAGGTGCTCGGAGACGAGCTACTTGTCATCCAATCTTCATCAGATGCAAATGCAGGAGGCCCTGCCCTCATATACACTTGCTGCCCTGATCCAACTGCTGATGAATTGCAGTGGCAAGCTCTTGAGCACGGCCACAGCCGCCCTACCCGCTTCATTGTTAATTGTTCCGTCATGGCTGCTTGA

Protein Analysis

424

Amino Acids

47.45

Weight (kDa)

6.63

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 170 - 356 1.1e-09 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 186 - 273 8.4e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 205 - 253 1.2e-08 Kelch motif
Kelch_FKB95 PF25210 242 - 299 7.1e-10 FKB95, Kelch-repeats domain
Kelch_1 PF01344 256 - 300 9.5e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccIII TCCGGA 2 cut(s) 779, 1070
AciI CCGC 8 cut(s) 124, 203, 415, 633, 666, 938, 1228, 1237
AclWI GGATC 2 cut(s) 374, 1172
AcoI YGGCCR 3 cut(s) 660, 957, 1219
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 2 cut(s) 33, 873
AfaI GTAC 3 cut(s) 284, 298, 971
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 363
AflIII ACRYGT 1 cut(s) 638
AgsI TTSAA 3 cut(s) 328, 718, 980
AjnI CCWGG 2 cut(s) 263, 722
AluBI AGCT 9 cut(s) 151, 340, 451, 908, 967, 997, 1058, 1108, 1208
AluI AGCT 9 cut(s) 151, 340, 451, 908, 967, 997, 1058, 1108, 1208
Alw21I GWGCWC 4 cut(s) 342, 999, 1098, 1218
Alw26I GTCTC 2 cut(s) 504, 1095
AlwI GGATC 2 cut(s) 374, 1172
Aor13HI TCCGGA 2 cut(s) 779, 1070
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 6 cut(s) 115, 354, 660, 957, 1147, 1219
ApeKI GCWGC 3 cut(s) 148, 1170, 1265
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 2 cut(s) 312, 509
AspS9I GGNCC 3 cut(s) 354, 596, 1148
AsuC2I CCSGG 2 cut(s) 600, 893
AsuHPI GGTGA 2 cut(s) 413, 1063
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 181
BalI TGGCCA 1 cut(s) 959
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 3 cut(s) 342, 378, 999
BarI GAAGNNNNNNTAC 2 cut(s) 613, 645
Bbv12I GWGCWC 4 cut(s) 342, 999, 1098, 1218
BbvI GCAGC 3 cut(s) 160, 1157, 1252
BccI CCATC 4 cut(s) 161, 664, 940, 1068
BceAI ACGGC 3 cut(s) 111, 161, 1234
BciT130I CCWGG 2 cut(s) 265, 724
BciVI GTATCC 1 cut(s) 538
BclI TGATCA 1 cut(s) 606
BcnI CCSGG 2 cut(s) 600, 893
BcoDI GTCTC 2 cut(s) 504, 1095
BfaI CTAG 2 cut(s) 84, 902
BfoI RGCGCY 1 cut(s) 313
BfuI GTATCC 1 cut(s) 538
BglII AGATCT 1 cut(s) 838
BisI GCNGC 5 cut(s) 124, 149, 1171, 1228, 1266
BlsI GCNGC 5 cut(s) 125, 150, 1172, 1229, 1267
Bme1390I CCNGG 4 cut(s) 265, 600, 724, 893
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 3 cut(s) 354, 596, 1148
BmiI GGNNCC 6 cut(s) 178, 270, 597, 598, 646, 741
BmrFI CCNGG 4 cut(s) 265, 600, 724, 893
BmsI GCATC 3 cut(s) 199, 1051, 1123
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 2 cut(s) 119, 152
BpuEI CTTGAG 2 cut(s) 983, 1232
BpuMI CCSGG 2 cut(s) 600, 893
BsaJI CCNNGG 5 cut(s) 127, 264, 614, 696, 722
BsaWI WCCGGW 4 cut(s) 285, 779, 1048, 1070
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 917
Bse21I CCTNAGG 1 cut(s) 181
BseAI TCCGGA 2 cut(s) 779, 1070
BseBI CCWGG 2 cut(s) 265, 724
BseDI CCNNGG 5 cut(s) 127, 264, 614, 696, 722
BseGI GGATG 9 cut(s) 49, 214, 226, 675, 774, 788, 888, 1079, 1116
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 3 cut(s) 110, 166, 699
BseNI ACTGG 1 cut(s) 917
BseXI GCAGC 3 cut(s) 160, 1157, 1252
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 6 cut(s) 117, 356, 662, 959, 1149, 1221
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 4 cut(s) 342, 999, 1098, 1218
BsiSI CCGG 8 cut(s) 286, 531, 600, 663, 780, 893, 1049, 1071
BslFI GGGAC 3 cut(s) 199, 526, 582
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 504, 1095
BsmBI CGTCTC 1 cut(s) 1095
BsmFI GGGAC 3 cut(s) 199, 526, 582
BsnI GGCC 6 cut(s) 117, 356, 662, 959, 1149, 1221
Bsp1286I GDGCHC 5 cut(s) 342, 378, 999, 1098, 1218
Bsp13I TCCGGA 2 cut(s) 779, 1070
Bsp143I GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 8 cut(s) 124, 203, 415, 633, 666, 938, 1228, 1237
BspANI GGCC 6 cut(s) 117, 356, 662, 959, 1149, 1221
BspCNI CTCAG 3 cut(s) 111, 165, 700
BspEI TCCGGA 2 cut(s) 779, 1070
BspLI GGNNCC 6 cut(s) 178, 270, 597, 598, 646, 741
BspPI GGATC 2 cut(s) 374, 1172
BspT107I GGYRCC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 1 cut(s) 917
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 5 cut(s) 127, 264, 614, 696, 722
BssMI GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
BssT1I CCWWGG 2 cut(s) 614, 696
Bst2UI CCWGG 2 cut(s) 265, 724
Bst4CI ACNGT 4 cut(s) 190, 324, 401, 465
Bst6I CTCTTC 3 cut(s) 323, 750, 829
BstC8I GCNNGC 3 cut(s) 338, 664, 1206
BstDEI CTNAG 6 cut(s) 62, 119, 152, 181, 708, 923
BstDSI CCRYGG 2 cut(s) 127, 696
BstF5I GGATG 9 cut(s) 49, 214, 226, 675, 774, 788, 888, 1079, 1116
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 2 cut(s) 312, 509
BstKTI GATC 6 cut(s) 278, 351, 369, 609, 841, 1180
BstMAI GTCTC 2 cut(s) 504, 1095
BstMBI GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
BstMWI GCNNNNNNNGC 6 cut(s) 89, 123, 154, 956, 1227, 1236
BstNI CCWGG 2 cut(s) 265, 724
BstNSI RCATGY 2 cut(s) 642, 901
BstSCI CCNGG 4 cut(s) 263, 598, 722, 891
BstV1I GCAGC 3 cut(s) 160, 1157, 1252
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
Bsu36I CCTNAGG 1 cut(s) 181
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 6 cut(s) 117, 356, 662, 959, 1149, 1221
BtgI CCRYGG 2 cut(s) 127, 696
BtsCI GGATG 9 cut(s) 49, 214, 226, 675, 774, 788, 888, 1079, 1116
BtsI GCAGTG 2 cut(s) 957, 1205
BtsIMutI CAGTG 3 cut(s) 320, 957, 1205
Cac8I GCNNGC 3 cut(s) 338, 664, 1206
CfoI GCGC 2 cut(s) 312, 509
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 354, 596, 1148
Csp6I GTAC 3 cut(s) 283, 297, 970
CviQI GTAC 3 cut(s) 283, 297, 970
DdeI CTNAG 6 cut(s) 62, 119, 152, 181, 708, 923
DpnI GATC 6 cut(s) 277, 350, 368, 608, 840, 1179
DpnII GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
DraI TTTAAA 1 cut(s) 136
EaeI YGGCCR 3 cut(s) 660, 957, 1219
Eam1104I CTCTTC 3 cut(s) 323, 750, 829
EarI CTCTTC 3 cut(s) 323, 750, 829
EciI GGCGGA 1 cut(s) 927
Ecl136II GAGCTC 2 cut(s) 340, 997
Eco130I CCWWGG 2 cut(s) 614, 696
Eco147I AGGCCT 1 cut(s) 117
Eco24I GRGCYC 3 cut(s) 342, 378, 999
Eco47I GGWCC 1 cut(s) 596
Eco47III AGCGCT 1 cut(s) 311
Eco53kI GAGCTC 2 cut(s) 340, 997
Eco57I CTGAAG 2 cut(s) 33, 873
Eco81I CCTNAGG 1 cut(s) 181
EcoICRI GAGCTC 2 cut(s) 340, 997
EcoO109I RGGNCCY 2 cut(s) 596, 1148
EcoRII CCWGG 2 cut(s) 263, 722
EcoT14I CCWWGG 2 cut(s) 614, 696
EcoT38I GRGCYC 3 cut(s) 342, 378, 999
ErhI CCWWGG 2 cut(s) 614, 696
Esp3I CGTCTC 1 cut(s) 1095
FaqI GGGAC 3 cut(s) 199, 526, 582
FauI CCCGC 3 cut(s) 408, 659, 1244
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 5 cut(s) 124, 149, 1171, 1228, 1266
FokI GGATG 9 cut(s) 56, 213, 221, 682, 781, 795, 875, 1086, 1103
FriOI GRGCYC 3 cut(s) 342, 378, 999
Fsp4HI GCNGC 5 cut(s) 124, 149, 1171, 1228, 1266
FspBI CTAG 2 cut(s) 84, 902
GlaI GCGC 2 cut(s) 311, 508
GluI GCNGC 5 cut(s) 124, 149, 1171, 1228, 1266
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 6 cut(s) 117, 356, 662, 959, 1149, 1221
HapII CCGG 8 cut(s) 286, 531, 600, 663, 780, 893, 1049, 1071
HhaI GCGC 2 cut(s) 312, 509
Hin6I GCGC 2 cut(s) 310, 507
HinP1I GCGC 2 cut(s) 310, 507
HinfI GANTC 5 cut(s) 470, 497, 514, 701, 714
HpaII CCGG 8 cut(s) 286, 531, 600, 663, 780, 893, 1049, 1071
HphI GGTGA 2 cut(s) 413, 1063
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 6 cut(s) 280, 469, 750, 1011, 1100, 1132
Hpy188III TCNNGA 4 cut(s) 780, 977, 1071, 1211
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4III ACNGT 4 cut(s) 190, 324, 401, 465
HpyCH4V TGCA 6 cut(s) 212, 444, 950, 1136, 1142, 1198
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 123, 154, 956, 1227, 1236
HpyF3I CTNAG 6 cut(s) 62, 119, 152, 181, 708, 923
HspAI GCGC 2 cut(s) 310, 507
KflI GGGWCCC 1 cut(s) 596
Kpn2I TCCGGA 2 cut(s) 779, 1070
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
LmnI GCTCC 3 cut(s) 456, 739, 782
Lsp1109I GCAGC 3 cut(s) 160, 1157, 1252
LweI GCATC 3 cut(s) 199, 1051, 1123
MaeI CTAG 2 cut(s) 84, 902
MalI GATC 6 cut(s) 277, 350, 368, 608, 840, 1179
MboI GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
MboII GAAGA 7 cut(s) 26, 29, 340, 737, 846, 1042, 1116
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 5 cut(s) 342, 378, 999, 1098, 1218
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 5 cut(s) 222, 419, 1034, 1193, 1249
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 2 cut(s) 506, 508
MmeI TCCRAC 2 cut(s) 85, 1205
Mox20I TGGCCA 1 cut(s) 959
MroI TCCGGA 2 cut(s) 779, 1070
MroNI GCCGGC 1 cut(s) 662
MscI TGGCCA 1 cut(s) 959
MseI TTAA 3 cut(s) 135, 1089, 1248
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 967
MspI CCGG 8 cut(s) 286, 531, 600, 663, 780, 893, 1049, 1071
MspR9I CCNGG 4 cut(s) 265, 600, 724, 893
MvaI CCWGG 2 cut(s) 265, 724
MwoI GCNNNNNNNGC 6 cut(s) 89, 123, 154, 956, 1227, 1236
NaeI GCCGGC 1 cut(s) 664
NciI CCSGG 2 cut(s) 600, 893
NcoI CCATGG 1 cut(s) 696
NdeII GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
NgoMIV GCCGGC 1 cut(s) 662
NlaIV GGNNCC 6 cut(s) 178, 270, 597, 598, 646, 741
NmeAIII GCCGAG 1 cut(s) 297
NspI RCATGY 2 cut(s) 642, 901
PceI AGGCCT 1 cut(s) 117
PciI ACATGT 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 470, 701, 714
PfoI TCCNGGA 1 cut(s) 891
PkrI GCNGC 5 cut(s) 125, 150, 1172, 1229, 1267
PleI GAGTC 2 cut(s) 505, 508
PpsI GAGTC 2 cut(s) 505, 508
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 1 cut(s) 638
Psp124BI GAGCTC 2 cut(s) 342, 999
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 263, 722
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 263, 722
PspN4I GGNNCC 6 cut(s) 178, 270, 597, 598, 646, 741
PspPI GGNCC 3 cut(s) 354, 596, 1148
PspPPI RGGWCCY 1 cut(s) 596
PsuI RGATCY 1 cut(s) 838
PvuII CAGCTG 1 cut(s) 967
RsaI GTAC 3 cut(s) 284, 298, 971
RsaNI GTAC 3 cut(s) 283, 297, 970
SacI GAGCTC 2 cut(s) 342, 999
SaqAI TTAA 3 cut(s) 135, 1089, 1248
SatI GCNGC 5 cut(s) 124, 149, 1171, 1228, 1266
Sau3AI GATC 6 cut(s) 275, 348, 366, 606, 838, 1177
Sau96I GGNCC 3 cut(s) 354, 596, 1148
SchI GAGTC 2 cut(s) 506, 508
ScrFI CCNGG 4 cut(s) 265, 600, 724, 893
SduI GDGCHC 5 cut(s) 342, 378, 999, 1098, 1218
SfaNI GCATC 3 cut(s) 199, 1051, 1123
SinI GGWCC 1 cut(s) 596
SmiI ATTTAAAT 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 998, 1211
SmoI CTYRAG 2 cut(s) 998, 1211
Sse9I AATT 5 cut(s) 222, 419, 1034, 1193, 1249
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 8 cut(s) 124, 203, 415, 633, 666, 938, 1228, 1237
SspI AATATT 1 cut(s) 140
SspMI CTAG 2 cut(s) 84, 902
SstI GAGCTC 2 cut(s) 342, 999
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 4 cut(s) 263, 598, 722, 891
StyI CCWWGG 2 cut(s) 614, 696
SwaI ATTTAAAT 1 cut(s) 136
TaaI ACNGT 4 cut(s) 190, 324, 401, 465
TaqI TCGA 2 cut(s) 112, 159
TasI AATT 5 cut(s) 222, 419, 1034, 1193, 1249
TatI WGTACW 1 cut(s) 969
TauI GCSGC 2 cut(s) 126, 1230
TfiI GAWTC 3 cut(s) 470, 701, 714
Tru1I TTAA 3 cut(s) 135, 1089, 1248
Tru9I TTAA 3 cut(s) 135, 1089, 1248
TscAI CASTG 3 cut(s) 327, 957, 1205
TseI GCWGC 3 cut(s) 148, 1170, 1265
TspDTI ATGAA 8 cut(s) 36, 60, 215, 469, 770, 1116, 1206, 1231
TspGWI ACGGA 2 cut(s) 666, 1246
TspRI CASTG 3 cut(s) 327, 957, 1205
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 1 cut(s) 419
XceI RCATGY 2 cut(s) 642, 901
XspI CTAG 2 cut(s) 84, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.