Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005792

Physical Location & Seq

Genomic Coordinates Forward (+)

16288754 .. 16290001

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCATTGATGCTACAAAAAAATCAAGCTCGTGGAACTAGAGCAAGCCTGAGCCAATTTGAGCCAAGAAAGCTTCTGATTGCTAGCACTAAACCCACCATCCCTGATCTGAATGCTGAACCTTGTTCCGACTCGGAAGAAGAAGAAACAGTGGAGAATCTCACAAGTCTTGCACCTCAAGATGCACACAATGGTCTTCCTAAGCTTATGTTCGACCTTGAGGTCGAGATCTTTTCCCGTCTTTCATGTTTTCAATATTGGAAACTAAATCTTCTCAACAAGCAGTTTTCGCAACTGCTACAAAGTCGTGAGATTTTTAAAGTGAGACGAGAACGTGGACTTGTGCAACCATATGTGCTTATGTTTTCGAGCGGTGAAACTTGTTGGGTAATGTTTGATAAAGGTTTCAAGAATTTCCGACAACTTCCAGAAATTCCTTCTGACTTTTGTTTCTTTTATGGAGATAAGGAAACGATTACTGCGGGTACGCATTTGATAGTCATCGGGAGAGAGGAGAAGCGTATTGTGGTGTGGCGATACGAACTAGAGGTAAACAAGTGGATCAACGATACTGAAATGATCACACCGCGGGTAATGTATGCTTCCGCAAGCCGTGGGACCGATGCATTTTTCGCTGGAGGAATCAAGACAAGCGAAAACGGGGGTCCTGATGTTGTGAACGTTGCTGAAAGATACAACTCCGATACAAAAACGTGGAAAGCGATGAAAGCAATGCACAAGCGAAGAAAATTTAGCTCGGGATGTTTCTTGCGGGGTAAGTTTTACGCTCTTGGTGGTCGAGATGAGAATGATGTGTACCTTACTTGTGGAGAAAGTTACGATGAGTTAACAGATTCATGGAAGTTGATACCAGACATGCTCAAAGGCATGACTTTCATGAATCCCCAATCCCCTCCACTTATTGCTGTGGTCAAGGACAACCTCTACTTGCTGGAAACATGGTTGAACGAGCTTTGGGTTTATGATATAAACGCAAACGTTTGGAAAAATCTTGGAGTTGTGCCTGTGAAAGCAAATGCTGCTTTAGGTTGGGGAGTTGCATTTAAGTCAGTTGGAGATAGGATTTTGGTGATTGGAGCTTCAGTTACTAAATCGTGGGATAACAAAATGTCAGTTTACACATGTTGCCCATTTCCAAAAGTGGAAAAGATTACTTGGGAGGAGACTAGCTGCGATTGTGTTCAGCTCGGCCATTTTATCCGTAACTGTTGTGTGATGCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

415

Amino Acids

47.39

Weight (kDa)

6.9

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	155 - 367	3e-08	FKB95, Kelch-repeats domain
Beta-prop_Calicin	PF13964	177 - 297	4.3e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	248 - 293	3.4e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27150 AT3G27150 AT5G40680
fragaria_vesca	FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292 FvH4_6g53292
malus_domestica	MD09G1011800.v1.1 MD09G1011900.v1.1 MD17G1012500.v1.1
prunus_persica	Prupe.3G305200_v2.0.a1 Prupe.3G305200_v2.0.a1
pyrus_communis	pycom111g01010 pycom111g01020 pycom17g01000
rosa_chinensis	RchiOBHm_Chr2g0175451
rosa_laevigata	RLG00000022328
rosa_multiflora	Rmu_sc0003512.1_g000016
rosa_roxburghii	Rroxscaffold_2G00077320
rosa_rugosa	Rorug02G0584300 Rorug02G0584400 Rorug02G0584500
rosa_samantha	Rh2AG664300 Rh2BG675000 Rh2CG638300 Rh2DG689000
rosa_wichuraiana	Rw2G054440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	372
AccII	CGCG	1 cut(s)	589
AciI	CCGC	6 cut(s)	372, 482, 587, 589, 606, 772
AclI	AACGTT	2 cut(s)	681, 999
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	1210
AcsI	RAATTY	3 cut(s)	412, 432, 749
AcuI	CTGAAG	1 cut(s)	1086
AfaI	GTAC	2 cut(s)	487, 818
AflIII	ACRYGT	1 cut(s)	1142
AgsI	TTSAA	3 cut(s)	254, 409, 967
AluBI	AGCT	8 cut(s)	29, 73, 205, 756, 973, 1100, 1191, 1207
AluI	AGCT	8 cut(s)	29, 73, 205, 756, 973, 1100, 1191, 1207
Alw26I	GTCTC	2 cut(s)	319, 1178
AlwI	GGATC	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	757
AoxI	GGCC	1 cut(s)	1210
ApeKI	GCWGC	2 cut(s)	1040, 1191
ApoI	RAATTY	3 cut(s)	412, 432, 749
AspS9I	GGNCC	2 cut(s)	618, 665
AsuHPI	GGTGA	2 cut(s)	386, 1102
AsuNHI	GCTAGC	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	757
AvaII	GGWCC	2 cut(s)	618, 665
BauI	CACGAG	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	1027, 1178
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	319, 1178
BfaI	CTAG	4 cut(s)	39, 84, 545, 1188
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	2 cut(s)	1041, 1192
BlsI	GCNGC	2 cut(s)	1042, 1193
Bme18I	GGWCC	2 cut(s)	618, 665
BmeT110I	CYCGRG	1 cut(s)	757
BmgT120I	GGNCC	2 cut(s)	618, 665
BmiI	GGNNCC	2 cut(s)	619, 666
BmsI	GCATC	3 cut(s)	172, 613, 1227
BmtI	GCTAGC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	2 cut(s)	50, 201
BpuEI	CTTGAG	2 cut(s)	162, 239
BsaBI	GATNNNNATC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	587, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	1089, 1119
Bse3DI	GCAATG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	587, 613
BseGI	GGATG	2 cut(s)	99, 767
BseJI	GATNNNNATC	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	527, 1196
BseXI	GCAGC	2 cut(s)	1027, 1178
Bsh1236I	CGCG	1 cut(s)	589
BshFI	GGCC	1 cut(s)	1212
BsiHKCI	CYCGRG	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	319, 1178
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	1212
BsoBI	CYCGRG	1 cut(s)	757
Bsp143I	GATC	4 cut(s)	106, 228, 561, 579
BspACI	CCGC	6 cut(s)	372, 482, 587, 589, 606, 772
BspANI	GGCC	1 cut(s)	1212
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	619, 666
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	587, 613
BssMI	GATC	4 cut(s)	106, 228, 561, 579
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	151, 1229
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstC8I	GCNNGC	4 cut(s)	46, 85, 610, 1242
BstDEI	CTNAG	2 cut(s)	50, 201
BstDSI	CCRYGG	2 cut(s)	587, 613
BstF5I	GGATG	2 cut(s)	99, 767
BstFNI	CGCG	1 cut(s)	589
BstKTI	GATC	4 cut(s)	109, 231, 564, 582
BstMAI	GTCTC	2 cut(s)	319, 1178
BstMBI	GATC	4 cut(s)	106, 228, 561, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 289, 632, 728, 1040
BstNSI	RCATGY	2 cut(s)	880, 1146
BstUI	CGCG	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	1027, 1178
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	1212
BtgI	CCRYGG	2 cut(s)	587, 613
BtgZI	GCGATG	1 cut(s)	737
BtsCI	GGATG	2 cut(s)	99, 767
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	46, 85, 610, 1242
CciI	TCATGA	1 cut(s)	897
Cfr13I	GGNCC	2 cut(s)	618, 665
Cfr42I	CCGCGG	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	486, 817
CviAII	CATG	7 cut(s)	246, 858, 877, 889, 898, 960, 1143
CviQI	GTAC	2 cut(s)	486, 817
DdeI	CTNAG	2 cut(s)	50, 201
DpnI	GATC	4 cut(s)	108, 230, 563, 581
DpnII	GATC	4 cut(s)	106, 228, 561, 579
DraI	TTTAAA	1 cut(s)	319
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	1210
Eco47I	GGWCC	2 cut(s)	618, 665
Eco57I	CTGAAG	1 cut(s)	1086
Eco88I	CYCGRG	1 cut(s)	757
EcoO109I	RGGNCCY	1 cut(s)	665
EcoT22I	ATGCAT	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	7 cut(s)	249, 861, 880, 892, 901, 963, 1146
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	7 cut(s)	245, 857, 876, 888, 897, 959, 1142
FauI	CCCGC	3 cut(s)	475, 582, 765
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	1041, 1192
FokI	GGATG	2 cut(s)	86, 774
Fsp4HI	GCNGC	2 cut(s)	1041, 1192
FspBI	CTAG	4 cut(s)	39, 84, 545, 1188
GluI	GCNGC	2 cut(s)	1041, 1192
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	1212
Hin1II	CATG	7 cut(s)	249, 861, 880, 892, 901, 963, 1146
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	2 cut(s)	71, 203
HinfI	GANTC	5 cut(s)	131, 157, 642, 854, 901
HpaI	GTTAAC	1 cut(s)	849
HphI	GGTGA	2 cut(s)	386, 1102
Hpy166II	GTNNAC	6 cut(s)	338, 553, 679, 817, 849, 1138
Hpy188I	TCNGA	7 cut(s)	78, 111, 130, 136, 419, 442, 703
Hpy8I	GTNNAC	6 cut(s)	338, 553, 679, 817, 849, 1138
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	151, 1229
HpyCH4IV	ACGT	4 cut(s)	334, 681, 713, 999
HpyCH4V	TGCA	6 cut(s)	173, 185, 346, 626, 736, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 289, 632, 728, 1040
HpyF3I	CTNAG	2 cut(s)	50, 201
HpySE526I	ACGT	4 cut(s)	334, 681, 713, 999
Hsp92II	CATG	7 cut(s)	249, 861, 880, 892, 901, 963, 1146
Ksp22I	TGATCA	1 cut(s)	579
KspAI	GTTAAC	1 cut(s)	849
KspI	CCGCGG	1 cut(s)	590
Kzo9I	GATC	4 cut(s)	106, 228, 561, 579
LmnI	GCTCC	1 cut(s)	1097
LpnPI	CCDG	8 cut(s)	62, 117, 441, 621, 681, 885, 938, 1038
Lsp1109I	GCAGC	2 cut(s)	1027, 1178
LweI	GCATC	3 cut(s)	172, 613, 1227
MaeI	CTAG	4 cut(s)	39, 84, 545, 1188
MaeII	ACGT	4 cut(s)	334, 681, 713, 999
MaeIII	GTNAC	3 cut(s)	836, 1105, 1223
MalI	GATC	4 cut(s)	108, 230, 563, 581
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	4 cut(s)	106, 228, 561, 579
MboII	GAAGA	6 cut(s)	149, 152, 155, 188, 263, 756
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	4 cut(s)	56, 412, 432, 749
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	3 cut(s)	153, 442, 1054
MnlI	CCTC	8 cut(s)	186, 214, 505, 541, 632, 924, 953, 1174
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	4 cut(s)	318, 848, 1065, 1246
MspA1I	CMGCKG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	589
MwoI	GCNNNNNNNGC	5 cut(s)	70, 289, 632, 728, 1040
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	4 cut(s)	106, 228, 561, 579
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	7 cut(s)	249, 861, 880, 892, 901, 963, 1146
NlaIV	GGNNCC	2 cut(s)	619, 666
NmeAIII	GCCGAG	1 cut(s)	1188
NsiI	ATGCAT	1 cut(s)	628
NspI	RCATGY	2 cut(s)	880, 1146
PagI	TCATGA	1 cut(s)	897
PciI	ACATGT	1 cut(s)	1142
PcsI	WCGNNNNNNNCGW	1 cut(s)	719
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	157, 642, 854, 901
PkrI	GCNGC	2 cut(s)	1042, 1193
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	665
PscI	ACATGT	1 cut(s)	1142
Psp1406I	AACGTT	2 cut(s)	681, 999
Psp5II	RGGWCCY	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	619, 666
PspPI	GGNCC	2 cut(s)	618, 665
PspPPI	RGGWCCY	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	487, 818
RsaNI	GTAC	2 cut(s)	486, 817
SacII	CCGCGG	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	318, 848, 1065, 1246
SatI	GCNGC	2 cut(s)	1041, 1192
Sau3AI	GATC	4 cut(s)	106, 228, 561, 579
Sau96I	GGNCC	2 cut(s)	618, 665
SchI	GAGTC	1 cut(s)	125
SfaNI	GCATC	3 cut(s)	172, 613, 1227
Sfr303I	CCGCGG	1 cut(s)	590
SgrBI	CCGCGG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	618, 665
SmlI	CTYRAG	2 cut(s)	177, 218
SmoI	CTYRAG	2 cut(s)	177, 218
Sse9I	AATT	4 cut(s)	56, 412, 432, 749
SsiI	CCGC	6 cut(s)	372, 482, 587, 589, 606, 772
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	4 cut(s)	39, 84, 545, 1188
TaaI	ACNGT	2 cut(s)	151, 1229
TaiI	ACGT	4 cut(s)	337, 684, 716, 1002
TaqI	TCGA	4 cut(s)	213, 225, 368, 799
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	4 cut(s)	56, 412, 432, 749
TfiI	GAWTC	4 cut(s)	157, 642, 854, 901
Tru1I	TTAA	4 cut(s)	318, 848, 1065, 1246
Tru9I	TTAA	4 cut(s)	318, 848, 1065, 1246
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	1040, 1191
TspDTI	ATGAA	5 cut(s)	234, 740, 846, 886, 914
TspGWI	ACGGA	1 cut(s)	1211
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	618, 665
XapI	RAATTY	3 cut(s)	412, 432, 749
XceI	RCATGY	2 cut(s)	880, 1146
XspI	CTAG	4 cut(s)	39, 84, 545, 1188
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.