AT3G27200

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015441
Physical Location & Seq
Reverse (-)
10043522 .. 10044539
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27200.1

Sequence Viewer

Length: 525 bp
ATGAAAATGCAAGCAGTTCTTGTTATCTTGGTTTTCTCCGGTTTACTTTCGGTTAAGACAGCGTTAGCAGCACGACATGTGATCGGCGGGAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTCAAAGTCGGCGACCAAATCGTTTTTAAGTATTCAGAACTACACAGCGTTGTGGAGCTAGGAAGTGAAACAGCATACAAGAGTTGTGACCTGGGAACATCAGTTAATTCCTTAAGCTCTGGAAACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGGCATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCCGCTTCCTCTCCTTCAGGTTCAGGTTCGGGTTCGGATTCAGGGTCGGGTTCTGGATCTAGTTCAGGTCATGGGTTACGTGCTTCCACTGGATACATGTTCGTTGTTGGATCGTTGGTTATTGGTCTTATTTGGGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

18.02

Weight (kDa)

6.89

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 115 6.1e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AciI CCGC 2 cut(s) 87, 384
AclI AACGTT 1 cut(s) 360
AclWI GGATC 2 cut(s) 445, 499
AcuI CTGAAG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 100
AflII CTTAAG 1 cut(s) 256
AflIII ACRYGT 2 cut(s) 76, 477
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 3 cut(s) 202, 261, 283
AluI AGCT 3 cut(s) 202, 261, 283
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 2 cut(s) 445, 499
ApeKI GCWGC 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 236
BciVI GTATCC 1 cut(s) 467
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 203, 441
BfrI CTTAAG 1 cut(s) 256
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 92, 319
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 94, 235
BsaWI WCCGGW 2 cut(s) 38, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 94, 235
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 293
BsiSI CCGG 2 cut(s) 39, 294
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 81, 136, 437, 491
BspACI CCGC 2 cut(s) 87, 384
BspLI GGNNCC 2 cut(s) 92, 319
BspPI GGATC 2 cut(s) 445, 499
BspTI CTTAAG 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 94, 235
BssMI GATC 4 cut(s) 81, 136, 437, 491
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 12
BstKTI GATC 4 cut(s) 84, 139, 440, 494
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 4 cut(s) 81, 136, 437, 491
BstMWI GCNNNNNNNGC 2 cut(s) 68, 339
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 2 cut(s) 80, 481
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuI GTATCC 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 293
Csp6I GTAC 1 cut(s) 297
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 4 cut(s) 77, 343, 452, 478
CviJI RGCY 6 cut(s) 93, 99, 202, 261, 283, 518
CviKI_1 RGCY 6 cut(s) 93, 99, 202, 261, 283, 518
CviQI GTAC 1 cut(s) 297
DpnI GATC 4 cut(s) 83, 138, 439, 493
DpnII GATC 4 cut(s) 81, 136, 437, 491
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 80, 346, 455, 481
FaiI YATR 5 cut(s) 78, 220, 344, 453, 479
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 4 cut(s) 76, 342, 451, 477
FauI CCCGC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 203, 441
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 103
HapII CCGG 2 cut(s) 39, 294
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 4 cut(s) 80, 346, 455, 481
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 122, 374, 419
HpaII CCGG 2 cut(s) 39, 294
Hpy166II GTNNAC 2 cut(s) 44, 358
Hpy188I TCNGA 4 cut(s) 136, 181, 373, 418
Hpy188III TCNNGA 2 cut(s) 264, 435
Hpy8I GTNNAC 2 cut(s) 44, 358
Hpy99I CGWCG 2 cut(s) 275, 278
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 3 cut(s) 273, 360, 460
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 339
HpySE526I ACGT 3 cut(s) 273, 360, 460
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 4 cut(s) 80, 346, 455, 481
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 81, 136, 437, 491
LmnI GCTCC 2 cut(s) 90, 199
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 2 cut(s) 203, 441
MaeII ACGT 3 cut(s) 273, 360, 460
MaeIII GTNAC 3 cut(s) 230, 302, 456
MalI GATC 4 cut(s) 83, 138, 439, 493
MboI GATC 4 cut(s) 81, 136, 437, 491
MboII GAAGA 3 cut(s) 123, 358, 360
MflI RGATCY 1 cut(s) 437
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 1 cut(s) 400
MseI TTAA 6 cut(s) 54, 171, 249, 257, 279, 351
MspCI CTTAAG 1 cut(s) 256
MspI CCGG 2 cut(s) 39, 294
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 68, 339
NdeII GATC 4 cut(s) 81, 136, 437, 491
NlaIII CATG 4 cut(s) 80, 346, 455, 481
NlaIV GGNNCC 2 cut(s) 92, 319
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 2 cut(s) 80, 481
PciI ACATGT 2 cut(s) 76, 477
PfeI GAWTC 2 cut(s) 122, 419
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 461
PscI ACATGT 2 cut(s) 76, 477
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 92, 319
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 6 cut(s) 54, 171, 249, 257, 279, 351
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 81, 136, 437, 491
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 87, 384
SspMI CTAG 2 cut(s) 203, 441
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 3 cut(s) 276, 363, 463
TasI AATT 1 cut(s) 250
TfiI GAWTC 2 cut(s) 122, 419
Tru1I TTAA 6 cut(s) 54, 171, 249, 257, 279, 351
Tru9I TTAA 6 cut(s) 54, 171, 249, 257, 279, 351
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 17, 359
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 256
XceI RCATGY 2 cut(s) 80, 481
XspI CTAG 2 cut(s) 203, 441
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.