RLG00000022316

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015441
Physical Location & Seq
Forward (+)
82509231 .. 82509870
640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022316

Sequence Viewer

Length: 543 bp
ATGGGGCTCAAGAACACAATTTTGTTGTCTTTGTTTTTTGTAGCTTTGGTTGCAAAGAAAGGCTTGGCAGCACAACATGTAGTTGGGGGCAGCCAAGGTTGGGAAGAATCCACAGACTTCAACTCCTGGGCATCTGCTCAGAAATTCAAGGTTGGCGATCAACTTGTTTTCAAGTACACTTCGGGTTTGCACAGTGTCGTTGAACTACCTAACGAGAGTGCCTTCAAGAACTGTGACCTTGGGAGTGCACTGGACTCGAAGAAGGGAGGAAACGATGTGGTGAAGTTGAACAAGGCCGGTACAAGATATTTTGCTTGTGGTACTTTAGGCCACTGTGACCAAGGCATGAAGGTGAAGATCACTACTGCAGGAAGCACTGCAGCTTCTTCTCCGGCATCATCATCCTCGAACGATGATGGTTCTTCTTCAGATACTTCTACCACTACTTCAACTACTTCTGCAGCTTCTGCCAACTTCAATTCTTTCGCTTTGTTCTTTGTGATGACTGCAGTATCGGCACTCGTTCTGGTTTATGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

18.73

Weight (kDa)

7.7

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 7.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 176, 301, 322
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 8 cut(s) 121, 148, 172, 203, 226, 289, 450, 478
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 3 cut(s) 44, 383, 464
AluI AGCT 3 cut(s) 44, 383, 464
Alw21I GWGCWC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 2 cut(s) 294, 328
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 4 cut(s) 68, 90, 380, 461
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 292, 364
BaeGI GKGCMC 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 4 cut(s) 80, 102, 392, 473
BccI CCATC 1 cut(s) 410
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 127
BfmI CTRYAG 4 cut(s) 366, 378, 459, 507
BisI GCNGC 4 cut(s) 69, 91, 381, 462
BlsI GCNGC 4 cut(s) 70, 92, 382, 463
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 140, 404
BsaJI CCNNGG 4 cut(s) 94, 126, 238, 340
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 4 cut(s) 94, 126, 238, 340
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 4 cut(s) 80, 102, 392, 473
BshFI GGCC 2 cut(s) 296, 330
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 297, 392
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 296, 330
Bsp1286I GDGCHC 2 cut(s) 9, 250
Bsp143I GATC 2 cut(s) 157, 357
BspANI GGCC 2 cut(s) 296, 330
BspCNI CTCAG 1 cut(s) 151
BspMAI CTGCAG 4 cut(s) 370, 382, 463, 511
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 94, 126, 238, 340
BssMI GATC 2 cut(s) 157, 357
BssT1I CCWWGG 3 cut(s) 94, 238, 340
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 194, 233, 335
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 2 cut(s) 160, 360
BstMBI GATC 2 cut(s) 157, 357
BstMWI GCNNNNNNNGC 3 cut(s) 50, 467, 515
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 4 cut(s) 366, 378, 459, 507
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 4 cut(s) 80, 102, 392, 473
BsuRI GGCC 2 cut(s) 296, 330
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 4 cut(s) 199, 248, 331, 375
CaiI CAGNNNCTG 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 3 cut(s) 175, 300, 321
CviAII CATG 2 cut(s) 77, 346
CviJI RGCY 8 cut(s) 7, 44, 63, 93, 296, 330, 383, 464
CviKI_1 RGCY 8 cut(s) 7, 44, 63, 93, 296, 330, 383, 464
CviQI GTAC 3 cut(s) 175, 300, 321
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 159, 359
DpnII GATC 2 cut(s) 157, 357
Eco130I CCWWGG 3 cut(s) 94, 238, 340
Eco24I GRGCYC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 3 cut(s) 94, 238, 340
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 94, 238, 340
FaeI CATG 2 cut(s) 80, 349
FaiI YATR 3 cut(s) 78, 347, 534
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 2 cut(s) 76, 345
Fnu4HI GCNGC 4 cut(s) 69, 91, 381, 462
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 69, 91, 381, 462
GluI GCNGC 4 cut(s) 69, 91, 381, 462
HaeIII GGCC 2 cut(s) 296, 330
HapII CCGG 2 cut(s) 297, 392
Hin1II CATG 2 cut(s) 80, 349
HinfI GANTC 2 cut(s) 107, 254
HpaII CCGG 2 cut(s) 297, 392
HphI GGTGA 2 cut(s) 292, 364
Hpy166II GTNNAC 2 cut(s) 177, 248
Hpy188I TCNGA 2 cut(s) 141, 430
Hpy188III TCNNGA 2 cut(s) 10, 226
Hpy8I GTNNAC 2 cut(s) 177, 248
HpyAV CCTTC 3 cut(s) 232, 256, 343
HpyCH4III ACNGT 3 cut(s) 194, 233, 335
HpyCH4V TGCA 7 cut(s) 53, 190, 248, 368, 380, 461, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 467, 515
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 80, 349
Kzo9I GATC 2 cut(s) 157, 357
LpnPI CCDG 7 cut(s) 112, 139, 236, 310, 354, 405, 512
Lsp1109I GCAGC 4 cut(s) 80, 102, 392, 473
LweI GCATC 2 cut(s) 140, 404
MaeIII GTNAC 2 cut(s) 233, 335
MalI GATC 2 cut(s) 159, 359
MboI GATC 2 cut(s) 157, 357
MboII GAAGA 6 cut(s) 116, 271, 367, 378, 414, 417
MhlI GDGCHC 2 cut(s) 9, 250
MluCI AATT 3 cut(s) 18, 143, 478
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 260, 415
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 2 cut(s) 297, 392
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 3 cut(s) 50, 467, 515
NdeII GATC 2 cut(s) 157, 357
NlaIII CATG 2 cut(s) 80, 349
NmuCI GTSAC 2 cut(s) 233, 335
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 70, 92, 382, 463
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PstI CTGCAG 4 cut(s) 370, 382, 463, 511
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 3 cut(s) 176, 301, 322
RsaNI GTAC 3 cut(s) 175, 300, 321
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 4 cut(s) 69, 91, 381, 462
Sau3AI GATC 2 cut(s) 157, 357
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 2 cut(s) 9, 250
SetI ASST 8 cut(s) 46, 100, 153, 211, 240, 354, 385, 466
SfaNI GCATC 2 cut(s) 140, 404
SfcI CTRYAG 4 cut(s) 366, 378, 459, 507
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 18, 143, 478
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 3 cut(s) 94, 238, 340
TaaI ACNGT 3 cut(s) 194, 233, 335
TaqI TCGA 2 cut(s) 257, 407
TasI AATT 3 cut(s) 18, 143, 478
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 4 cut(s) 199, 255, 338, 382
TseFI GTSAC 2 cut(s) 233, 335
TseI GCWGC 4 cut(s) 68, 90, 380, 461
Tsp45I GTSAC 2 cut(s) 233, 335
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 4 cut(s) 199, 255, 338, 382
VneI GTGCAC 1 cut(s) 246
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.