pycom111g01080

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0015441
Physical Location & Seq
Reverse (-)
689926 .. 690879
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01080.2

Sequence Viewer

Length: 516 bp
ATGGGGCGTACGAACACAGTTTTGTTGGTGTTGGTTTTTGCAGCTTTGTTCACAAAGGAAACCTTGGCAGCACAGCATGTTGTTGGGGGAAGCCAAGGCTGGGAGGAATCCACAGACTTGAACTCATGGGCATCCGGCGAGAAATTTAAGGTTGGCGATCAACTTGTTTTTAAGTACACCTCGGGGCTGCACAGTGTGGTGGAGCTACCAAACGAAAGCGCCTACAAGAGCTGCGACACCGGCAATGCCCTAGACTCCAAGTCTAGCGGCAATGATGTGGTGAAACTGACCAAGGCCGGCACACGATATTTTGCTTGTGGCACTTTAGGCCACTGCGGCCAAGGCATGAAGATCAAGATCACTACTGTCGCCGGAAACGCACCTTCTTCATCGTCGTCGCCGTCGTCTTCTATAGCAGCTGCTTCTTCTTCTTCTTCTTCTTCTTCCCTGCATTCTGTCACTTCATTGTTTGGGATTGCTGCATTATCTGTCCCCCTTCTGCTTTCCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

17.63

Weight (kDa)

7.74

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 336
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 143
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 10, 176
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 121
AhdI GACNNNNNGTC 1 cut(s) 259
AluBI AGCT 4 cut(s) 44, 205, 231, 419
AluI AGCT 4 cut(s) 44, 205, 231, 419
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 294, 328, 337
ApeKI GCWGC 7 cut(s) 41, 68, 187, 231, 416, 419, 479
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 7 cut(s) 53, 80, 174, 218, 406, 428, 466
BceAI ACGGC 1 cut(s) 385
BfaI CTAG 2 cut(s) 251, 264
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 336
BisI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 417, 420, 480
BlsI GCNGC 9 cut(s) 43, 70, 189, 233, 269, 338, 418, 421, 481
BmeRI GACNNNNNGTC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 181
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 356
BsaJI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 2 cut(s) 239, 296
Bse3DI GCAATG 2 cut(s) 250, 277
Bse8I GATNNNNATC 1 cut(s) 356
BseDI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 2 cut(s) 250, 277
BseXI GCAGC 7 cut(s) 53, 80, 174, 218, 406, 428, 466
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 3 cut(s) 296, 330, 339
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 135, 240, 297, 372
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 3 cut(s) 296, 330, 339
BsoBI CYCGRG 1 cut(s) 181
Bsp143I GATC 3 cut(s) 157, 351, 357
BspACI CCGC 2 cut(s) 267, 336
BspANI GGCC 3 cut(s) 296, 330, 339
BsrDI GCAATG 2 cut(s) 250, 277
BsrFI RCCGGY 2 cut(s) 239, 296
BssAI RCCGGY 2 cut(s) 239, 296
BssECI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BssMI GATC 3 cut(s) 157, 351, 357
BssT1I CCWWGG 4 cut(s) 63, 94, 291, 340
Bst4CI ACNGT 3 cut(s) 19, 194, 367
BstC8I GCNNGC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 160, 354, 360
BstMBI GATC 3 cut(s) 157, 351, 357
BstMWI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 377
BstNSI RCATGY 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 7 cut(s) 53, 80, 174, 218, 406, 428, 466
BstV2I GAAGAC 1 cut(s) 399
BsuRI GGCC 3 cut(s) 296, 330, 339
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 199, 331
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 2 cut(s) 239, 296
Csp6I GTAC 2 cut(s) 9, 175
CviAII CATG 4 cut(s) 77, 126, 346, 508
CviQI GTAC 2 cut(s) 9, 175
DpnI GATC 3 cut(s) 159, 353, 359
DpnII GATC 3 cut(s) 157, 351, 357
DraIII CACNNNGTG 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 337
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 4 cut(s) 63, 94, 291, 340
Eco88I CYCGRG 1 cut(s) 181
EcoT14I CCWWGG 4 cut(s) 63, 94, 291, 340
ErhI CCWWGG 4 cut(s) 63, 94, 291, 340
FaeI CATG 4 cut(s) 80, 129, 349, 511
FaiI YATR 5 cut(s) 78, 127, 347, 413, 509
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 476
FatI CATG 4 cut(s) 76, 125, 345, 507
Fnu4HI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 417, 420, 480
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 417, 420, 480
FspBI CTAG 2 cut(s) 251, 264
GlaI GCGC 1 cut(s) 220
GluI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 417, 420, 480
GsaI CCCAGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 296, 330, 339
HapII CCGG 4 cut(s) 135, 240, 297, 372
HhaI GCGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 80, 129, 349, 511
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 107, 254
HpaII CCGG 4 cut(s) 135, 240, 297, 372
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 51, 177
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 2 cut(s) 51, 177
Hpy99I CGWCG 3 cut(s) 397, 400, 406
HpyAV CCTTC 2 cut(s) 393, 506
HpyCH4III ACNGT 3 cut(s) 19, 194, 367
HpyCH4V TGCA 4 cut(s) 41, 190, 451, 482
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 377
Hsp92II CATG 4 cut(s) 80, 129, 349, 511
HspAI GCGC 1 cut(s) 219
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 157, 351, 357
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 85, 148, 253, 310, 385, 461
Lsp1109I GCAGC 7 cut(s) 53, 80, 174, 218, 406, 428, 466
LweI GCATC 1 cut(s) 140
MaeI CTAG 2 cut(s) 251, 264
MaeIII GTNAC 1 cut(s) 457
MalI GATC 3 cut(s) 159, 353, 359
MboI GATC 3 cut(s) 157, 351, 357
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 97, 190
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 3 cut(s) 147, 171, 514
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 4 cut(s) 135, 240, 297, 372
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 377
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 3 cut(s) 157, 351, 357
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 80, 129, 349, 511
NmuCI GTSAC 1 cut(s) 457
NspI RCATGY 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 401
PctI GAATGC 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 107
Pfl23II CGTACG 1 cut(s) 8
PkrI GCNGC 9 cut(s) 43, 70, 189, 233, 269, 338, 418, 421, 481
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 99
PspLI CGTACG 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 10, 176
RsaNI GTAC 2 cut(s) 9, 175
SaqAI TTAA 3 cut(s) 147, 171, 514
SatI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 417, 420, 480
Sau3AI GATC 3 cut(s) 157, 351, 357
SchI GAGTC 1 cut(s) 248
SetI ASST 8 cut(s) 46, 65, 153, 182, 207, 233, 385, 421
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 411
SfiI GGCCNNNNNGGCC 1 cut(s) 336
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 267, 336
SspMI CTAG 2 cut(s) 251, 264
StyI CCWWGG 4 cut(s) 63, 94, 291, 340
TaaI ACNGT 3 cut(s) 19, 194, 367
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 270, 339
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 147, 171, 514
Tru9I TTAA 3 cut(s) 147, 171, 514
TscAI CASTG 2 cut(s) 199, 338
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 7 cut(s) 41, 68, 187, 231, 416, 419, 479
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 362, 378, 453
TspRI CASTG 2 cut(s) 199, 338
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
XspI CTAG 2 cut(s) 251, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.